Wall clock time and date at job start Mon Mar 30 2020 07:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.33641 * 126.03942 * 90.02170 * 3 2 1 5 5 N 1.31777 * 114.49765 * 180.02562 * 4 3 2 6 6 C 1.29022 * 117.12847 * 359.97438 * 5 4 3 7 7 C 1.50704 * 124.91576 * 180.02562 * 6 5 4 8 8 H 1.09011 * 109.46881 * 164.97638 * 7 6 5 9 9 C 1.52998 * 109.47037 * 284.97532 * 7 6 5 10 10 N 1.46901 * 109.47190 * 44.98057 * 7 6 5 11 11 C 1.46900 * 111.00017 * 154.99878 * 10 7 6 12 12 H 1.09007 * 109.47093 * 34.99649 * 11 10 7 13 13 C 1.52994 * 109.47086 * 274.99799 * 11 10 7 14 14 C 1.50696 * 109.47138 * 154.99559 * 11 10 7 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00204 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99941 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99990 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47424 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47211 * 119.99881 * 18 16 14 21 21 H 1.48502 * 109.47025 * 239.99616 * 18 16 14 22 22 S 1.70982 * 110.16535 * 359.72804 * 6 5 4 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 28 28 H 1.07997 * 122.74954 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.47401 * 299.99851 * 9 7 6 30 30 H 1.08997 * 109.47176 * 60.00296 * 9 7 6 31 31 H 1.09008 * 109.46732 * 180.02562 * 9 7 6 32 32 H 1.00903 * 110.99322 * 278.95177 * 10 7 6 33 33 H 1.09005 * 109.47479 * 180.02562 * 13 11 10 34 34 H 1.08998 * 109.47274 * 300.00028 * 13 11 10 35 35 H 1.09004 * 109.47308 * 59.99774 * 13 11 10 36 36 H 0.96998 * 120.00057 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2948 2.1620 1.0806 5 7 2.7246 3.3795 0.8170 6 6 2.8398 3.7065 -0.4258 7 6 3.3137 5.0473 -0.9246 8 1 3.5693 4.9721 -1.9817 9 6 2.2015 6.0818 -0.7412 10 7 4.4991 5.4623 -0.1626 11 6 5.3250 6.3953 -0.9405 12 1 4.6809 7.0305 -1.5486 13 6 6.2676 5.6051 -1.8504 14 6 6.1343 7.2525 -0.0018 15 1 6.0443 7.1174 1.0659 16 6 6.9895 8.2093 -0.5060 17 7 7.0993 8.3734 -1.8063 18 14 7.9931 9.2713 0.6576 19 1 7.6902 8.8910 2.0607 20 1 9.4397 9.0678 0.3904 21 1 7.6470 10.7000 0.4467 22 16 2.3849 2.3956 -1.4248 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.1653 1.7934 2.0874 29 1 1.3220 5.7739 -1.3067 30 1 1.9459 6.1570 0.3157 31 1 2.5442 7.0515 -1.1025 32 1 4.2359 5.8653 0.7242 33 1 6.8809 6.2974 -2.4274 34 1 6.9117 4.9699 -1.2424 35 1 5.6823 4.9850 -2.5294 36 1 7.7013 9.0463 -2.1610 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125165982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:34 Heat of formation + Delta-G solvation = 28.265095 kcal Electronic energy + Delta-G solvation = -16474.014161 eV Core-core repulsion = 13891.400726 eV Total energy + Delta-G solvation = -2582.613434 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.52641 -36.64381 -34.35096 -33.05104 -30.57286 -28.34636 -26.95557 -25.54302 -25.07378 -23.02591 -21.86228 -19.94494 -18.45173 -17.89948 -16.51903 -15.30110 -14.98246 -14.51803 -14.34493 -14.07083 -13.85543 -13.53924 -13.33553 -12.58393 -12.35997 -12.22052 -11.89519 -11.69758 -11.49522 -11.46499 -10.98606 -10.86794 -10.72604 -10.67674 -10.39454 -10.13303 -9.99113 -9.24221 -8.99649 -8.83925 -8.52749 -8.46421 -7.28776 -6.02958 -4.08690 0.96929 1.55932 1.99993 3.14682 3.29676 3.37657 3.42771 4.41071 4.48413 4.77549 4.87559 5.10827 5.18631 5.29042 5.41987 5.45421 5.54889 5.59939 5.65317 5.70879 5.93318 5.97814 6.08164 6.24314 6.38320 6.58024 6.85468 7.12877 7.20354 7.47302 7.78896 7.88135 8.09988 8.26180 8.39191 8.65444 9.01939 9.57266 11.03535 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.045855 B = 0.004460 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.479517 B = 6277.028190 C = 6399.705513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.239 4.239 4 C 0.041 3.959 5 N -0.463 5.463 6 C 0.093 3.907 7 C 0.156 3.844 8 H 0.090 0.910 9 C -0.170 4.170 10 N -0.671 5.671 11 C 0.212 3.788 12 H 0.005 0.995 13 C -0.126 4.126 14 C -0.515 4.515 15 H 0.061 0.939 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 S 0.094 5.906 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.167 0.833 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.342 0.658 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.003 0.997 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.253 -13.154 0.647 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.360 4.360 4 C -0.111 4.111 5 N -0.176 5.176 6 C -0.186 4.186 7 C 0.042 3.958 8 H 0.108 0.892 9 C -0.230 4.230 10 N -0.303 5.303 11 C 0.104 3.896 12 H 0.023 0.977 13 C -0.184 4.184 14 C -0.554 4.554 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 S 0.350 5.650 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.184 0.816 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.659 -13.341 -0.340 17.721 hybrid contribution 0.027 1.030 1.486 1.808 sum -11.633 -12.311 1.145 16.976 Atomic orbital electron populations 1.21797 0.94578 1.01713 1.02420 1.19904 0.95829 0.89266 1.03075 1.25829 1.12649 1.02322 0.95225 1.21694 1.00603 0.89112 0.99664 1.66182 1.15545 1.17060 1.18811 1.27409 0.99920 1.00544 0.90744 1.20081 0.91507 0.86242 0.98011 0.89194 1.22448 0.98248 0.99881 1.02444 1.60615 1.15953 1.47161 1.06567 1.19169 0.90540 0.87767 0.92088 0.97723 1.21754 0.99632 0.98741 0.98311 1.21276 1.24176 1.16865 0.93091 0.92062 1.24904 0.96791 0.97129 0.95144 1.69901 1.37919 1.34058 1.11052 0.86463 0.79935 0.79972 0.81174 1.19715 1.21004 1.21110 1.83863 1.61411 1.07506 1.12264 0.92190 0.92563 0.92366 0.90080 0.90928 0.81557 0.93058 0.91957 0.90944 0.83899 0.89937 0.94934 0.97844 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.04 -0.38 6.47 -27.88 -0.18 -0.56 16 3 C -0.24 -3.06 5.85 -35.92 -0.21 -3.27 16 4 C 0.04 0.59 11.25 -19.19 -0.22 0.37 16 5 N -0.46 -8.12 10.50 -11.86 -0.12 -8.25 16 6 C 0.09 1.60 6.25 -13.46 -0.08 1.52 16 7 C 0.16 2.89 2.90 -68.86 -0.20 2.69 16 8 H 0.09 1.67 7.11 -51.92 -0.37 1.31 16 9 C -0.17 -2.80 9.13 37.16 0.34 -2.46 16 10 N -0.67 -14.71 6.00 -102.17 -0.61 -15.32 16 11 C 0.21 5.31 2.41 -68.87 -0.17 5.15 16 12 H 0.01 0.14 7.11 -51.93 -0.37 -0.23 16 13 C -0.13 -3.15 9.17 37.15 0.34 -2.80 16 14 C -0.52 -14.14 8.59 -34.44 -0.30 -14.44 16 15 H 0.06 1.68 7.62 -52.48 -0.40 1.28 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 18 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 S 0.09 1.32 23.18 -107.50 -2.49 -1.17 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.07 1.26 7.43 -51.92 -0.39 0.88 16 32 H 0.34 7.60 7.96 -39.29 -0.31 7.28 16 33 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.00 0.06 7.43 -51.93 -0.39 -0.33 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -29.11 311.31 -8.81 -37.92 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.48 Total: 3.42 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.40 Total: -13.00 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.11 Total: -48.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.49 Total: -1.17 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.11 -8.81 -37.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125165982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.183 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds