Wall clock time and date at job start Mon Mar 30 2020 07:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.33641 * 126.03942 * 90.02170 * 3 2 1 5 5 N 1.31777 * 114.49765 * 180.02562 * 4 3 2 6 6 C 1.29022 * 117.12847 * 359.97438 * 5 4 3 7 7 C 1.50704 * 124.91576 * 180.02562 * 6 5 4 8 8 H 1.09011 * 109.46881 * 164.97638 * 7 6 5 9 9 C 1.52998 * 109.47037 * 284.97532 * 7 6 5 10 10 N 1.46901 * 109.47190 * 44.98057 * 7 6 5 11 11 C 1.46900 * 111.00017 * 154.99878 * 10 7 6 12 12 H 1.09007 * 109.47093 * 34.99649 * 11 10 7 13 13 C 1.52994 * 109.47086 * 274.99799 * 11 10 7 14 14 C 1.50696 * 109.47138 * 154.99559 * 11 10 7 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00204 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99941 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99990 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47424 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47211 * 119.99881 * 18 16 14 21 21 H 1.48502 * 109.47025 * 239.99616 * 18 16 14 22 22 S 1.70982 * 110.16535 * 359.72804 * 6 5 4 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 28 28 H 1.07997 * 122.74954 * 0.02562 * 4 3 2 29 29 H 1.09001 * 109.47401 * 299.99851 * 9 7 6 30 30 H 1.08997 * 109.47176 * 60.00296 * 9 7 6 31 31 H 1.09008 * 109.46732 * 180.02562 * 9 7 6 32 32 H 1.00903 * 110.99322 * 278.95177 * 10 7 6 33 33 H 1.09005 * 109.47479 * 180.02562 * 13 11 10 34 34 H 1.08998 * 109.47274 * 300.00028 * 13 11 10 35 35 H 1.09004 * 109.47308 * 59.99774 * 13 11 10 36 36 H 0.96998 * 120.00057 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2948 2.1620 1.0806 5 7 2.7246 3.3795 0.8170 6 6 2.8398 3.7065 -0.4258 7 6 3.3137 5.0473 -0.9246 8 1 3.5693 4.9721 -1.9817 9 6 2.2015 6.0818 -0.7412 10 7 4.4991 5.4623 -0.1626 11 6 5.3250 6.3953 -0.9405 12 1 4.6809 7.0305 -1.5486 13 6 6.2676 5.6051 -1.8504 14 6 6.1343 7.2525 -0.0018 15 1 6.0443 7.1174 1.0659 16 6 6.9895 8.2093 -0.5060 17 7 7.0993 8.3734 -1.8063 18 14 7.9931 9.2713 0.6576 19 1 7.6902 8.8910 2.0607 20 1 9.4397 9.0678 0.3904 21 1 7.6470 10.7000 0.4467 22 16 2.3849 2.3956 -1.4248 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 2.1653 1.7934 2.0874 29 1 1.3220 5.7739 -1.3067 30 1 1.9459 6.1570 0.3157 31 1 2.5442 7.0515 -1.1025 32 1 4.2359 5.8653 0.7242 33 1 6.8809 6.2974 -2.4274 34 1 6.9117 4.9699 -1.2424 35 1 5.6823 4.9850 -2.5294 36 1 7.7013 9.0463 -2.1610 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125165982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:33 Heat of formation + Delta-G solvation = 10.122145 kcal Electronic energy + Delta-G solvation = -16474.800898 eV Core-core repulsion = 13891.400726 eV Total energy + Delta-G solvation = -2583.400172 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71748 -38.27946 -35.55399 -34.65460 -32.35111 -29.45100 -28.69450 -27.30276 -26.55736 -24.03078 -23.12491 -21.75118 -19.78200 -19.12120 -18.36173 -16.93895 -16.47807 -15.81587 -15.73692 -15.37829 -14.99907 -14.75610 -14.66581 -14.29812 -13.83600 -13.39888 -13.28878 -13.08146 -12.85861 -12.58370 -12.57401 -12.46078 -12.33528 -12.24332 -12.18299 -11.85783 -11.69600 -10.92507 -10.58523 -10.42410 -10.12407 -9.64075 -9.04801 -8.13261 -6.26255 -0.17906 0.43693 0.85668 1.41092 1.43306 1.55089 1.97797 2.42279 3.15531 3.29988 3.65496 3.92237 3.97496 4.17335 4.21972 4.34222 4.43576 4.63194 4.70561 4.78814 4.84005 4.85097 5.05236 5.05634 5.13388 5.18892 5.20358 5.33591 5.40780 5.47207 5.67563 5.85071 6.21720 6.45963 6.72827 6.95927 6.98034 7.43699 8.92631 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.045855 B = 0.004460 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.479517 B = 6277.028190 C = 6399.705513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.217 4.217 4 C 0.015 3.985 5 N -0.487 5.487 6 C 0.056 3.944 7 C 0.157 3.843 8 H 0.084 0.916 9 C -0.160 4.160 10 N -0.673 5.673 11 C 0.218 3.782 12 H -0.017 1.017 13 C -0.114 4.114 14 C -0.536 4.536 15 H 0.055 0.945 16 C 0.016 3.984 17 N -0.915 5.915 18 Si 0.961 3.039 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.279 1.279 22 S 0.123 5.877 23 H 0.081 0.919 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.189 0.811 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.337 0.663 33 H 0.061 0.939 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.127 -14.767 1.108 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.339 4.339 4 C -0.135 4.135 5 N -0.201 5.201 6 C -0.223 4.223 7 C 0.043 3.957 8 H 0.102 0.898 9 C -0.220 4.220 10 N -0.305 5.305 11 C 0.110 3.890 12 H 0.001 0.999 13 C -0.173 4.173 14 C -0.574 4.574 15 H 0.073 0.927 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.786 3.214 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.204 1.204 22 S 0.379 5.621 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.206 0.794 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.546 -14.960 0.118 19.525 hybrid contribution 0.218 1.392 1.320 1.931 sum -12.328 -13.568 1.438 18.389 Atomic orbital electron populations 1.21782 0.93393 1.03052 1.01991 1.20123 0.96698 0.86915 1.04530 1.26372 1.09986 1.03438 0.94056 1.22039 1.01691 0.88546 1.01219 1.66139 1.15719 1.18829 1.19403 1.26988 1.02586 1.01031 0.91656 1.20032 0.90713 0.87818 0.97173 0.89786 1.22317 0.98565 0.98582 1.02540 1.60522 1.17814 1.45789 1.06344 1.18941 0.90458 0.87854 0.91740 0.99932 1.21579 0.99340 0.98177 0.98167 1.21560 1.24914 1.17771 0.93161 0.92725 1.25663 0.97738 0.98261 0.96636 1.70009 1.38430 1.34567 1.12451 0.85469 0.78341 0.78368 0.79200 1.19439 1.20602 1.20429 1.83690 1.60439 1.06060 1.11941 0.90021 0.93212 0.92618 0.88199 0.89869 0.79421 0.90579 0.92251 0.92506 0.84442 0.92073 0.95871 0.95926 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 71.98 0.71 -1.13 16 2 C -0.04 -0.64 6.47 29.85 0.19 -0.45 16 3 C -0.22 -5.03 5.85 24.64 0.14 -4.89 16 4 C 0.02 0.41 11.25 83.66 0.94 1.35 16 5 N -0.49 -16.77 10.50 -191.45 -2.01 -18.78 16 6 C 0.06 1.89 6.25 88.52 0.55 2.44 16 7 C 0.16 5.84 2.90 44.17 0.13 5.96 16 8 H 0.08 3.16 7.11 -2.38 -0.02 3.15 16 9 C -0.16 -5.30 9.13 71.98 0.66 -4.65 16 10 N -0.67 -30.13 6.00 -477.15 -2.86 -33.00 16 11 C 0.22 11.24 2.41 44.17 0.11 11.34 16 12 H -0.02 -0.93 7.11 -2.38 -0.02 -0.94 16 13 C -0.11 -5.80 9.17 71.98 0.66 -5.14 16 14 C -0.54 -29.94 8.59 25.60 0.22 -29.72 16 15 H 0.05 3.05 7.62 -2.91 -0.02 3.03 16 16 C 0.02 0.91 5.30 84.65 0.45 1.36 16 17 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 18 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 S 0.12 3.27 23.18 -56.49 -1.31 1.96 16 23 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.19 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 31 H 0.06 2.03 7.43 -2.38 -0.02 2.01 16 32 H 0.34 15.41 7.96 -89.69 -0.71 14.70 16 33 H 0.06 3.36 6.07 -2.38 -0.01 3.35 16 34 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.02 1.01 7.43 -2.39 -0.02 0.99 16 36 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -62.43 311.31 1.20 -61.23 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.35 Total: 18.36 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 4.76 Total: -23.51 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -4.63 Total: -104.10 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.31 Total: 1.96 kcal Total: -62.43 1.20 -61.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125165982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.347 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds