Wall clock time and date at job start Mon Mar 30 2020 07:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47259 * 2 1 4 4 C 1.33641 * 126.03663 * 90.03902 * 3 2 1 5 5 N 1.31783 * 114.50422 * 179.71790 * 4 3 2 6 6 C 1.29033 * 117.11786 * 0.47958 * 5 4 3 7 7 C 1.50698 * 124.91306 * 179.80955 * 6 5 4 8 8 H 1.08999 * 109.47608 * 194.69260 * 7 6 5 9 9 C 1.53003 * 109.47185 * 74.69423 * 7 6 5 10 10 N 1.46907 * 109.47401 * 314.69511 * 7 6 5 11 11 C 1.46892 * 110.99962 * 247.59921 * 10 7 6 12 12 H 1.08995 * 109.47723 * 35.92275 * 11 10 7 13 13 C 1.53002 * 109.47079 * 275.92519 * 11 10 7 14 14 C 1.50700 * 109.47317 * 155.92472 * 11 10 7 15 15 H 1.08000 * 119.99564 * 5.56063 * 14 11 10 16 16 C 1.37874 * 120.00275 * 185.55823 * 14 11 10 17 17 N 1.31518 * 120.00085 * 194.41781 * 16 14 11 18 18 Si 1.86799 * 120.00104 * 14.41777 * 16 14 11 19 19 H 1.48497 * 109.47203 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47101 * 300.00197 * 18 16 14 21 21 H 1.48504 * 109.46801 * 60.00038 * 18 16 14 22 22 S 1.70970 * 110.16862 * 359.54318 * 6 5 4 23 23 H 1.09000 * 109.47226 * 60.00069 * 1 2 3 24 24 H 1.09002 * 109.47188 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47321 * 299.99786 * 1 2 3 26 26 H 1.08997 * 109.47321 * 240.00214 * 2 1 3 27 27 H 1.09000 * 109.47226 * 119.99931 * 2 1 3 28 28 H 1.08002 * 122.75187 * 359.97167 * 4 3 2 29 29 H 1.08999 * 109.47161 * 61.69173 * 9 7 6 30 30 H 1.09000 * 109.47214 * 181.69795 * 9 7 6 31 31 H 1.08998 * 109.47076 * 301.69331 * 9 7 6 32 32 H 1.00904 * 110.99147 * 11.55153 * 10 7 6 33 33 H 1.09008 * 109.47065 * 302.87261 * 13 11 10 34 34 H 1.08997 * 109.47559 * 62.87307 * 13 11 10 35 35 H 1.08999 * 109.47237 * 182.88333 * 13 11 10 36 36 H 0.96992 * 119.99966 * 354.93168 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2951 2.1618 1.0807 5 7 2.7309 3.3772 0.8172 6 6 2.8413 3.7059 -0.4256 7 6 3.3163 5.0463 -0.9244 8 1 3.0704 5.1488 -1.9813 9 6 4.8317 5.1511 -0.7409 10 7 2.6558 6.1146 -0.1622 11 6 1.7328 6.8758 -1.0144 12 1 1.2584 6.2026 -1.7283 13 6 2.5096 7.9556 -1.7703 14 6 0.6765 7.5241 -0.1570 15 1 0.7402 7.4598 0.9192 16 6 -0.3711 8.1994 -0.7465 17 7 -1.1281 8.9973 -0.0253 18 14 -0.7152 7.9813 -2.5695 19 1 -1.8862 8.8092 -2.9548 20 1 0.4725 8.4082 -3.3520 21 1 -1.0058 6.5524 -2.8508 22 16 2.3779 2.3982 -1.4247 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1651 1.7933 2.0875 29 1 5.3233 4.3771 -1.3303 30 1 5.1710 6.1320 -1.0737 31 1 5.0802 5.0187 0.3120 32 1 2.1785 5.7410 0.6445 33 1 3.0256 8.5985 -1.0571 34 1 3.2393 7.4845 -2.4289 35 1 1.8174 8.5533 -2.3634 36 1 -0.9964 9.0545 0.9339 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125166230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:37 Heat of formation + Delta-G solvation = 30.803466 kcal Electronic energy + Delta-G solvation = -16721.274395 eV Core-core repulsion = 14138.771033 eV Total energy + Delta-G solvation = -2582.503362 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71308 -36.71525 -34.39407 -33.04737 -31.06276 -28.42960 -27.72732 -25.44063 -24.59566 -23.05854 -21.72647 -19.95506 -18.62355 -18.03550 -17.38191 -15.69791 -14.89031 -14.73233 -14.40294 -14.22467 -13.69146 -13.51328 -13.35397 -12.78116 -12.60235 -12.21425 -11.90559 -11.81481 -11.73213 -11.66073 -11.20038 -11.11226 -10.93542 -10.65376 -10.41762 -10.01024 -9.61108 -9.43362 -9.11783 -8.82822 -8.64719 -8.28453 -7.59064 -6.45197 -4.07526 0.82744 1.45036 1.87641 2.99662 3.35634 3.39876 3.58093 4.27515 4.47151 4.70187 4.84939 5.03586 5.09820 5.15371 5.28361 5.40492 5.52225 5.61627 5.64765 5.69613 5.89769 6.01076 6.03803 6.20221 6.29839 6.40825 6.54301 6.67638 6.78579 6.92680 7.46516 7.69381 7.92211 8.11373 8.40013 8.46654 8.95348 9.61900 10.94967 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.006508 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.851534 B = 4301.478860 C = 4866.819306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C -0.231 4.231 4 C 0.040 3.960 5 N -0.465 5.465 6 C 0.049 3.951 7 C 0.156 3.844 8 H 0.078 0.922 9 C -0.126 4.126 10 N -0.658 5.658 11 C 0.183 3.817 12 H -0.007 1.007 13 C -0.142 4.142 14 C -0.600 4.600 15 H 0.060 0.940 16 C 0.031 3.969 17 N -0.907 5.907 18 Si 1.045 2.955 19 H -0.285 1.285 20 H -0.269 1.269 21 H -0.286 1.286 22 S 0.101 5.899 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.171 0.829 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.352 0.648 33 H 0.052 0.948 34 H 0.019 0.981 35 H 0.055 0.945 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.433 -17.056 -3.426 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.081 4.081 3 C -0.353 4.353 4 C -0.111 4.111 5 N -0.178 5.178 6 C -0.230 4.230 7 C 0.042 3.958 8 H 0.096 0.904 9 C -0.186 4.186 10 N -0.292 5.292 11 C 0.074 3.926 12 H 0.010 0.990 13 C -0.200 4.200 14 C -0.638 4.638 15 H 0.079 0.921 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.873 3.127 19 H -0.211 1.211 20 H -0.196 1.196 21 H -0.212 1.212 22 S 0.356 5.644 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.188 0.812 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.173 0.827 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.050 -15.801 -5.406 18.128 hybrid contribution 0.052 -1.498 2.164 2.632 sum 7.102 -17.300 -3.242 18.980 Atomic orbital electron populations 1.21812 0.94265 1.01856 1.02809 1.19931 0.96126 0.88988 1.03035 1.25915 1.11680 1.02501 0.95159 1.21681 1.00813 0.88777 0.99844 1.66131 1.16133 1.16925 1.18608 1.28166 1.01768 1.01692 0.91423 1.20520 0.95988 0.82069 0.97238 0.90387 1.21768 0.92942 1.01592 1.02311 1.60815 1.36770 1.21858 1.09725 1.19597 0.89720 0.91162 0.92102 0.98979 1.22226 0.99108 0.99837 0.98865 1.22085 1.08576 1.38891 0.94275 0.92148 1.25711 0.93254 0.91884 1.06589 1.70838 1.42846 1.32150 1.08304 0.84087 0.76602 0.76489 0.75484 1.21068 1.19593 1.21231 1.83909 1.61048 1.07103 1.12315 0.92401 0.92040 0.92152 0.90894 0.89988 0.81220 0.93474 0.91156 0.91945 0.82692 0.92887 0.96187 0.92658 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.15 0.37 -1.02 16 2 C -0.04 -0.39 6.47 -27.89 -0.18 -0.57 16 3 C -0.23 -3.01 5.85 -35.92 -0.21 -3.22 16 4 C 0.04 0.58 11.25 -19.18 -0.22 0.37 16 5 N -0.46 -8.14 9.87 -11.86 -0.12 -8.26 16 6 C 0.05 0.84 6.06 -13.45 -0.08 0.76 16 7 C 0.16 2.79 3.05 -68.86 -0.21 2.58 16 8 H 0.08 1.37 7.28 -51.93 -0.38 0.99 16 9 C -0.13 -1.92 9.50 37.16 0.35 -1.57 16 10 N -0.66 -14.31 6.20 -102.17 -0.63 -14.94 16 11 C 0.18 4.45 1.97 -68.87 -0.14 4.31 16 12 H -0.01 -0.18 6.34 -51.93 -0.33 -0.51 16 13 C -0.14 -3.20 9.06 37.16 0.34 -2.87 16 14 C -0.60 -17.15 8.85 -34.44 -0.30 -17.46 16 15 H 0.06 1.88 7.93 -52.49 -0.42 1.46 16 16 C 0.03 0.90 5.36 -17.82 -0.10 0.80 16 17 N -0.91 -28.17 13.70 55.43 0.76 -27.41 16 18 Si 1.04 25.35 26.27 -169.99 -4.46 20.89 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -5.98 5.49 56.52 0.31 -5.67 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 S 0.10 1.43 23.18 -107.50 -2.49 -1.06 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.35 8.19 7.18 -39.29 -0.28 7.91 16 33 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.02 0.38 8.02 -51.93 -0.42 -0.04 16 35 H 0.05 1.28 4.50 -51.93 -0.23 1.04 16 36 H 0.27 8.32 8.73 -40.82 -0.36 7.97 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -30.88 307.54 -8.22 -39.10 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.53 Total: 4.93 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.38 Total: -17.89 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.01 Total: -50.61 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.46 Total: 20.89 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.49 Total: -1.06 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.88 -8.22 -39.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125166230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.904 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds