Wall clock time and date at job start Mon Mar 30 2020 07:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47259 * 2 1 4 4 C 1.33641 * 126.03663 * 90.03902 * 3 2 1 5 5 N 1.31783 * 114.50422 * 179.71790 * 4 3 2 6 6 C 1.29033 * 117.11786 * 0.47958 * 5 4 3 7 7 C 1.50698 * 124.91306 * 179.80955 * 6 5 4 8 8 H 1.08999 * 109.47608 * 194.69260 * 7 6 5 9 9 C 1.53003 * 109.47185 * 74.69423 * 7 6 5 10 10 N 1.46907 * 109.47401 * 314.69511 * 7 6 5 11 11 C 1.46892 * 110.99962 * 247.59921 * 10 7 6 12 12 H 1.08995 * 109.47723 * 35.92275 * 11 10 7 13 13 C 1.53002 * 109.47079 * 275.92519 * 11 10 7 14 14 C 1.50700 * 109.47317 * 155.92472 * 11 10 7 15 15 H 1.08000 * 119.99564 * 5.56063 * 14 11 10 16 16 C 1.37874 * 120.00275 * 185.55823 * 14 11 10 17 17 N 1.31518 * 120.00085 * 194.41781 * 16 14 11 18 18 Si 1.86799 * 120.00104 * 14.41777 * 16 14 11 19 19 H 1.48497 * 109.47203 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47101 * 300.00197 * 18 16 14 21 21 H 1.48504 * 109.46801 * 60.00038 * 18 16 14 22 22 S 1.70970 * 110.16862 * 359.54318 * 6 5 4 23 23 H 1.09000 * 109.47226 * 60.00069 * 1 2 3 24 24 H 1.09002 * 109.47188 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47321 * 299.99786 * 1 2 3 26 26 H 1.08997 * 109.47321 * 240.00214 * 2 1 3 27 27 H 1.09000 * 109.47226 * 119.99931 * 2 1 3 28 28 H 1.08002 * 122.75187 * 359.97167 * 4 3 2 29 29 H 1.08999 * 109.47161 * 61.69173 * 9 7 6 30 30 H 1.09000 * 109.47214 * 181.69795 * 9 7 6 31 31 H 1.08998 * 109.47076 * 301.69331 * 9 7 6 32 32 H 1.00904 * 110.99147 * 11.55153 * 10 7 6 33 33 H 1.09008 * 109.47065 * 302.87261 * 13 11 10 34 34 H 1.08997 * 109.47559 * 62.87307 * 13 11 10 35 35 H 1.08999 * 109.47237 * 182.88333 * 13 11 10 36 36 H 0.96992 * 119.99966 * 354.93168 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2951 2.1618 1.0807 5 7 2.7309 3.3772 0.8172 6 6 2.8413 3.7059 -0.4256 7 6 3.3163 5.0463 -0.9244 8 1 3.0704 5.1488 -1.9813 9 6 4.8317 5.1511 -0.7409 10 7 2.6558 6.1146 -0.1622 11 6 1.7328 6.8758 -1.0144 12 1 1.2584 6.2026 -1.7283 13 6 2.5096 7.9556 -1.7703 14 6 0.6765 7.5241 -0.1570 15 1 0.7402 7.4598 0.9192 16 6 -0.3711 8.1994 -0.7465 17 7 -1.1281 8.9973 -0.0253 18 14 -0.7152 7.9813 -2.5695 19 1 -1.8862 8.8092 -2.9548 20 1 0.4725 8.4082 -3.3520 21 1 -1.0058 6.5524 -2.8508 22 16 2.3779 2.3982 -1.4247 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1651 1.7933 2.0875 29 1 5.3233 4.3771 -1.3303 30 1 5.1710 6.1320 -1.0737 31 1 5.0802 5.0187 0.3120 32 1 2.1785 5.7410 0.6445 33 1 3.0256 8.5985 -1.0571 34 1 3.2393 7.4845 -2.4289 35 1 1.8174 8.5533 -2.3634 36 1 -0.9964 9.0545 0.9339 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125166230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:36 Heat of formation + Delta-G solvation = 9.505382 kcal Electronic energy + Delta-G solvation = -16722.197950 eV Core-core repulsion = 14138.771033 eV Total energy + Delta-G solvation = -2583.426916 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.90043 -38.29884 -35.63346 -34.70695 -32.86701 -29.50786 -29.32785 -26.71282 -26.55866 -24.03816 -22.94995 -21.78853 -20.07598 -19.48837 -19.05715 -17.03746 -16.48607 -15.97172 -15.74208 -15.37244 -15.01015 -14.94978 -14.66089 -14.32982 -14.12702 -13.74386 -13.50283 -13.16598 -12.80700 -12.69510 -12.68288 -12.46277 -12.29359 -12.12398 -11.93359 -11.78236 -11.47373 -10.96201 -10.65080 -10.48203 -10.23933 -9.76623 -9.28176 -8.76998 -6.41461 -0.31438 0.33999 0.73360 1.42051 1.49708 1.69086 1.83606 2.45781 3.04185 3.05768 3.51418 3.83901 3.87553 4.09845 4.29780 4.35759 4.37241 4.53325 4.55390 4.73146 4.77032 4.84799 4.96458 4.97718 4.98377 5.07278 5.10644 5.19201 5.31107 5.37440 5.59597 5.75540 5.97761 6.23446 6.55649 6.69255 6.79942 7.38203 8.60553 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.006508 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.851534 B = 4301.478860 C = 4866.819306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C -0.213 4.213 4 C 0.013 3.987 5 N -0.492 5.492 6 C 0.012 3.988 7 C 0.153 3.847 8 H 0.085 0.915 9 C -0.118 4.118 10 N -0.666 5.666 11 C 0.187 3.813 12 H -0.004 1.004 13 C -0.136 4.136 14 C -0.604 4.604 15 H 0.015 0.985 16 C -0.021 4.021 17 N -0.938 5.938 18 Si 1.082 2.918 19 H -0.288 1.288 20 H -0.231 1.231 21 H -0.269 1.269 22 S 0.132 5.868 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.189 0.811 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.338 0.662 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.357 -19.467 -5.699 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.081 4.081 3 C -0.335 4.335 4 C -0.137 4.137 5 N -0.207 5.207 6 C -0.266 4.266 7 C 0.040 3.960 8 H 0.103 0.897 9 C -0.177 4.177 10 N -0.298 5.298 11 C 0.077 3.923 12 H 0.013 0.987 13 C -0.194 4.194 14 C -0.642 4.642 15 H 0.034 0.966 16 C -0.218 4.218 17 N -0.574 5.574 18 Si 0.902 3.098 19 H -0.214 1.214 20 H -0.155 1.155 21 H -0.194 1.194 22 S 0.388 5.612 23 H 0.063 0.937 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.123 0.877 28 H 0.206 0.794 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.020 -18.221 -7.671 21.334 hybrid contribution -0.235 -0.894 2.987 3.127 sum 7.785 -19.115 -4.683 21.164 Atomic orbital electron populations 1.21814 0.94035 1.03164 1.01658 1.20138 0.96113 0.86826 1.05005 1.26450 1.09182 1.03711 0.94131 1.22025 1.01964 0.88348 1.01354 1.66093 1.16574 1.18518 1.19475 1.27907 1.03957 1.02619 0.92137 1.20575 0.96920 0.81672 0.96851 0.89725 1.21698 0.91334 1.02683 1.02027 1.60779 1.35629 1.23924 1.09471 1.19475 0.89377 0.91793 0.91658 0.98680 1.22104 0.99449 0.99008 0.98869 1.22307 1.10251 1.38871 0.92775 0.96635 1.27251 0.92788 0.90996 1.10809 1.70977 1.44438 1.34577 1.07443 0.83671 0.77906 0.77470 0.70710 1.21362 1.15483 1.19401 1.83681 1.60046 1.05710 1.11802 0.93665 0.89564 0.93204 0.89182 0.87725 0.79393 0.90730 0.90954 0.93226 0.84317 0.94107 0.92506 0.93070 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.89 71.98 0.71 -1.65 16 2 C -0.04 -0.64 6.47 29.85 0.19 -0.44 16 3 C -0.21 -5.06 5.85 24.64 0.14 -4.91 16 4 C 0.01 0.37 11.25 83.66 0.94 1.31 16 5 N -0.49 -17.13 9.87 -191.45 -1.89 -19.02 16 6 C 0.01 0.40 6.06 88.52 0.54 0.94 16 7 C 0.15 5.28 3.05 44.17 0.13 5.42 16 8 H 0.08 2.76 7.28 -2.39 -0.02 2.75 16 9 C -0.12 -3.40 9.50 71.98 0.68 -2.71 16 10 N -0.67 -29.08 6.20 -477.16 -2.96 -32.04 16 11 C 0.19 8.96 1.97 44.17 0.09 9.04 16 12 H 0.00 -0.20 6.34 -2.39 -0.02 -0.22 16 13 C -0.14 -5.87 9.06 71.98 0.65 -5.22 16 14 C -0.60 -35.51 8.85 25.60 0.23 -35.29 16 15 H 0.02 1.02 7.93 -2.91 -0.02 0.99 16 16 C -0.02 -1.22 5.36 84.65 0.45 -0.77 16 17 N -0.94 -60.19 13.70 21.45 0.29 -59.89 16 18 Si 1.08 49.94 26.27 68.60 1.80 51.74 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.23 -9.21 5.49 99.48 0.55 -8.67 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 S 0.13 3.47 23.18 -56.49 -1.31 2.16 16 23 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.19 4.29 8.06 -2.91 -0.02 4.26 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.34 16.29 7.18 -89.69 -0.64 15.64 16 33 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.06 2.01 8.02 -2.39 -0.02 1.99 16 35 H 0.05 2.22 4.50 -2.39 -0.01 2.21 16 36 H 0.25 16.41 8.73 -92.71 -0.81 15.60 16 Total: -1.00 -69.25 307.54 0.92 -68.33 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.22 Total: 23.00 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 4.76 Total: -34.28 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -4.56 Total: -110.95 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 1.80 Total: 51.74 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.31 Total: 2.16 kcal Total: -69.25 0.92 -68.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125166230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.833 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds