Wall clock time and date at job start Mon Mar 30 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42903 * 109.46923 * 120.00164 * 2 1 3 5 5 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 6 6 C 1.38262 * 119.93588 * 99.99825 * 5 2 1 7 7 C 1.38185 * 120.09049 * 179.97438 * 6 5 2 8 8 C 1.38653 * 119.97035 * 0.02562 * 7 6 5 9 9 O 1.35956 * 120.05989 * 180.02562 * 8 7 6 10 10 C 1.42901 * 117.00193 * 359.97438 * 9 8 7 11 11 C 1.52999 * 109.47257 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47341 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99487 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00517 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99868 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00265 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47154 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47111 * 120.00022 * 16 14 12 19 19 H 1.48497 * 109.47320 * 240.00078 * 16 14 12 20 20 C 1.38907 * 119.87821 * 359.97438 * 8 7 6 21 21 F 1.35101 * 120.04734 * 180.02562 * 20 8 7 22 22 C 1.38262 * 119.93476 * 279.72815 * 5 2 1 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 0.96700 * 114.00234 * 59.99815 * 4 2 1 27 27 H 1.07992 * 119.95439 * 359.96026 * 6 5 2 28 28 H 1.07995 * 120.01040 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.46962 * 300.00040 * 10 9 8 30 30 H 1.09001 * 109.46854 * 59.99958 * 10 9 8 31 31 H 1.08999 * 109.47467 * 300.00472 * 11 10 9 32 32 H 1.09001 * 109.47121 * 60.00246 * 11 10 9 33 33 H 0.96997 * 120.00111 * 180.02562 * 15 14 12 34 34 H 1.07996 * 119.98254 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0324 -0.7104 -1.2304 6 6 2.4586 0.0209 -2.3237 7 6 2.9204 -0.6272 -3.4534 8 6 2.9561 -2.0128 -3.4912 9 8 3.4105 -2.6523 -4.6015 10 6 3.8354 -1.8341 -5.6933 11 6 4.3103 -2.7245 -6.8434 12 6 4.7589 -1.8616 -7.9946 13 1 4.7105 -0.7857 -7.9138 14 6 5.2310 -2.4455 -9.1508 15 7 5.2894 -3.7557 -9.2494 16 14 5.7864 -1.3759 -10.5780 17 1 5.6208 0.0552 -10.2177 18 1 7.2156 -1.6490 -10.8744 19 1 4.9648 -1.6834 -11.7761 20 6 2.5276 -2.7462 -2.3921 21 9 2.5614 -4.0964 -2.4250 22 6 2.0716 -2.0921 -1.2617 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7210 -1.5953 1.2329 27 1 2.4303 1.1000 -2.2948 28 1 3.2525 -0.0548 -4.3068 29 1 3.0023 -1.2175 -6.0308 30 1 4.6545 -1.1922 -5.3691 31 1 5.1434 -3.3409 -6.5056 32 1 3.4914 -3.3666 -7.1677 33 1 5.6220 -4.1665 -10.0627 34 1 1.7418 -2.6609 -0.4050 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127081598.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:53 Heat of formation + Delta-G solvation = -126.538908 kcal Electronic energy + Delta-G solvation = -18024.215451 eV Core-core repulsion = 14836.383284 eV Total energy + Delta-G solvation = -3187.832167 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.59957 -40.02585 -38.42295 -36.36674 -33.44356 -31.77463 -30.73514 -30.32480 -28.55090 -25.34996 -23.72303 -22.96089 -21.48748 -20.57041 -18.38086 -17.41303 -16.79953 -16.15542 -16.14602 -15.90287 -15.02614 -14.85941 -14.72513 -14.60653 -14.38674 -13.71296 -13.31594 -12.79236 -12.62454 -12.41730 -12.29024 -12.15858 -11.60331 -11.52517 -11.14880 -10.91514 -10.86479 -10.63639 -10.38892 -9.94415 -9.73403 -9.33796 -8.93881 -8.49342 -7.94431 -6.13977 -4.19331 1.12411 1.24171 3.24152 3.30800 3.34172 3.51029 3.54697 4.15018 4.29344 4.37503 4.45509 4.64668 4.87603 4.93812 5.02374 5.18836 5.22491 5.41422 5.52065 5.60517 5.79572 5.85872 5.92294 5.96353 6.02187 6.20840 6.36446 6.57318 6.69056 7.32438 7.41581 7.58086 7.69852 7.92284 8.17936 8.86329 9.45369 10.97575 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.041631 B = 0.003873 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.416227 B = 7227.594978 C = 7731.802151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.152 3.848 3 H 0.108 0.892 4 O -0.559 6.559 5 C -0.145 4.145 6 C -0.078 4.078 7 C -0.184 4.184 8 C 0.117 3.883 9 O -0.306 6.306 10 C 0.063 3.937 11 C 0.025 3.975 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.888 5.888 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.061 3.939 21 F -0.132 7.132 22 C -0.111 4.111 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.374 0.626 27 H 0.130 0.870 28 H 0.143 0.857 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 7.336 17.077 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.093 3.907 3 H 0.125 0.875 4 O -0.365 6.365 5 C -0.146 4.146 6 C -0.096 4.096 7 C -0.203 4.203 8 C 0.069 3.931 9 O -0.219 6.219 10 C -0.011 4.011 11 C -0.012 4.012 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.526 5.526 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.042 3.958 21 F -0.111 7.111 22 C -0.130 4.130 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.222 0.778 27 H 0.148 0.852 28 H 0.160 0.840 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.312 7.506 16.998 20.356 hybrid contribution 0.095 -0.104 -1.176 1.184 sum -8.217 7.402 15.822 19.304 Atomic orbital electron populations 1.22510 0.95530 1.02951 1.02897 1.20707 0.92867 0.95820 0.81336 0.87466 1.86613 1.77390 1.29185 1.43291 1.20159 1.03904 0.93064 0.97498 1.20786 0.96904 0.99899 0.91999 1.21285 1.05648 0.92576 1.00773 1.19258 0.94635 0.91386 0.87866 1.86267 1.76216 1.37107 1.22317 1.23448 0.97630 0.95052 0.84931 1.19143 0.97449 0.95184 0.89461 1.20985 1.43818 0.92960 0.98820 0.92254 1.24998 0.95445 0.95076 0.98678 1.69988 1.45832 1.09044 1.27749 0.86415 0.78412 0.80463 0.82001 1.19625 1.20801 1.20804 1.16931 1.07398 0.77176 0.94339 1.91500 1.94661 1.28157 1.96787 1.20535 1.01453 0.94365 0.96620 0.91540 0.91186 0.92090 0.77804 0.85226 0.83971 0.92807 0.92791 0.95278 0.95287 0.92689 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 9.51 37.16 0.35 -0.94 16 2 C 0.15 1.32 3.83 -27.88 -0.11 1.22 16 3 H 0.11 0.86 8.00 -51.93 -0.42 0.44 16 4 O -0.56 -5.32 13.19 -35.23 -0.46 -5.78 16 5 C -0.15 -1.60 4.98 -104.60 -0.52 -2.12 16 6 C -0.08 -0.90 9.66 -39.59 -0.38 -1.28 16 7 C -0.18 -2.64 9.04 -39.45 -0.36 -3.00 16 8 C 0.12 2.02 6.69 -39.18 -0.26 1.76 16 9 O -0.31 -6.38 10.00 -19.60 -0.20 -6.58 16 10 C 0.06 1.33 4.68 37.16 0.17 1.50 16 11 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 12 C -0.53 -14.55 9.11 -34.44 -0.31 -14.87 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 16 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.06 0.98 7.31 -39.30 -0.29 0.69 16 21 F -0.13 -2.30 17.11 2.25 0.04 -2.27 16 22 C -0.11 -1.34 9.29 -39.54 -0.37 -1.71 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.37 2.40 7.49 45.56 0.34 2.74 16 27 H 0.13 1.12 8.03 -52.49 -0.42 0.70 16 28 H 0.14 1.94 6.30 -52.49 -0.33 1.61 16 29 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 30 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.13 1.21 6.77 -52.49 -0.36 0.85 16 LS Contribution 298.02 15.07 4.49 4.49 Total: -1.00 -31.43 298.02 -6.36 -37.79 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -3.63 Total: -1.42 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.32 Total: -16.65 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.66 Total: -12.36 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.43 -6.36 -37.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127081598.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.748 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds