Wall clock time and date at job start Mon Mar 30 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42903 * 109.46923 * 120.00164 * 2 1 3 5 5 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 6 6 C 1.38262 * 119.93588 * 99.99825 * 5 2 1 7 7 C 1.38185 * 120.09049 * 179.97438 * 6 5 2 8 8 C 1.38653 * 119.97035 * 0.02562 * 7 6 5 9 9 O 1.35956 * 120.05989 * 180.02562 * 8 7 6 10 10 C 1.42901 * 117.00193 * 359.97438 * 9 8 7 11 11 C 1.52999 * 109.47257 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47341 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99487 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00517 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99868 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00265 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47154 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47111 * 120.00022 * 16 14 12 19 19 H 1.48497 * 109.47320 * 240.00078 * 16 14 12 20 20 C 1.38907 * 119.87821 * 359.97438 * 8 7 6 21 21 F 1.35101 * 120.04734 * 180.02562 * 20 8 7 22 22 C 1.38262 * 119.93476 * 279.72815 * 5 2 1 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 0.96700 * 114.00234 * 59.99815 * 4 2 1 27 27 H 1.07992 * 119.95439 * 359.96026 * 6 5 2 28 28 H 1.07995 * 120.01040 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.46962 * 300.00040 * 10 9 8 30 30 H 1.09001 * 109.46854 * 59.99958 * 10 9 8 31 31 H 1.08999 * 109.47467 * 300.00472 * 11 10 9 32 32 H 1.09001 * 109.47121 * 60.00246 * 11 10 9 33 33 H 0.96997 * 120.00111 * 180.02562 * 15 14 12 34 34 H 1.07996 * 119.98254 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0324 -0.7104 -1.2304 6 6 2.4586 0.0209 -2.3237 7 6 2.9204 -0.6272 -3.4534 8 6 2.9561 -2.0128 -3.4912 9 8 3.4105 -2.6523 -4.6015 10 6 3.8354 -1.8341 -5.6933 11 6 4.3103 -2.7245 -6.8434 12 6 4.7589 -1.8616 -7.9946 13 1 4.7105 -0.7857 -7.9138 14 6 5.2310 -2.4455 -9.1508 15 7 5.2894 -3.7557 -9.2494 16 14 5.7864 -1.3759 -10.5780 17 1 5.6208 0.0552 -10.2177 18 1 7.2156 -1.6490 -10.8744 19 1 4.9648 -1.6834 -11.7761 20 6 2.5276 -2.7462 -2.3921 21 9 2.5614 -4.0964 -2.4250 22 6 2.0716 -2.0921 -1.2617 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7210 -1.5953 1.2329 27 1 2.4303 1.1000 -2.2948 28 1 3.2525 -0.0548 -4.3068 29 1 3.0023 -1.2175 -6.0308 30 1 4.6545 -1.1922 -5.3691 31 1 5.1434 -3.3409 -6.5056 32 1 3.4914 -3.3666 -7.1677 33 1 5.6220 -4.1665 -10.0627 34 1 1.7418 -2.6609 -0.4050 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127081598.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:53 Heat of formation + Delta-G solvation = -147.667100 kcal Electronic energy + Delta-G solvation = -18025.131638 eV Core-core repulsion = 14836.383284 eV Total energy + Delta-G solvation = -3188.748354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.86594 -41.17987 -39.53522 -37.34587 -35.49107 -32.86268 -32.05158 -31.69525 -29.57175 -27.13695 -24.84766 -24.14025 -22.85806 -21.88301 -19.66624 -18.67484 -18.04180 -17.88340 -17.32672 -17.13064 -16.53419 -16.31698 -15.81676 -15.75084 -15.34799 -14.93441 -14.37733 -14.24426 -13.95293 -13.83848 -13.56122 -13.21455 -12.91654 -12.75887 -12.56648 -12.48817 -12.22678 -11.92744 -11.64416 -11.59634 -11.41770 -11.11308 -10.64962 -9.98825 -9.15004 -8.28301 -6.42717 0.07479 0.15732 1.40936 1.42096 1.55546 2.12936 2.43348 2.46855 3.06452 3.15762 3.55922 3.60022 3.69481 3.95243 4.11886 4.22160 4.26022 4.30061 4.38583 4.50762 4.67774 4.75235 4.93064 4.96413 5.05160 5.17676 5.27887 5.29696 5.41981 5.45448 5.60281 5.72958 6.03197 6.36432 6.72589 6.78517 7.27997 8.85251 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.041631 B = 0.003873 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.416227 B = 7227.594978 C = 7731.802151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.155 3.845 3 H 0.122 0.878 4 O -0.572 6.572 5 C -0.131 4.131 6 C -0.069 4.069 7 C -0.187 4.187 8 C 0.075 3.925 9 O -0.340 6.340 10 C 0.082 3.918 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.075 0.925 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.979 3.021 17 H -0.255 1.255 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.034 3.966 21 F -0.151 7.151 22 C -0.102 4.102 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.386 0.614 27 H 0.168 0.832 28 H 0.147 0.853 29 H 0.068 0.932 30 H 0.067 0.933 31 H -0.004 1.004 32 H -0.004 1.004 33 H 0.267 0.733 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.384 10.290 18.356 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.096 3.904 3 H 0.139 0.861 4 O -0.380 6.380 5 C -0.132 4.132 6 C -0.087 4.087 7 C -0.205 4.205 8 C 0.028 3.972 9 O -0.255 6.255 10 C 0.008 3.992 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.093 0.907 14 C -0.199 4.199 15 N -0.572 5.572 16 Si 0.802 3.198 17 H -0.178 1.178 18 H -0.204 1.204 19 H -0.203 1.203 20 C 0.014 3.986 21 F -0.130 7.130 22 C -0.121 4.121 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.236 0.764 27 H 0.185 0.815 28 H 0.165 0.835 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.014 0.986 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.049 10.466 18.311 22.950 hybrid contribution 0.248 -1.018 -1.388 1.739 sum -8.801 9.449 16.923 21.287 Atomic orbital electron populations 1.22482 0.94094 1.03349 1.03648 1.20824 0.93839 0.95956 0.79744 0.86059 1.86602 1.77759 1.30378 1.43304 1.20615 1.01683 0.92631 0.98268 1.21221 0.94945 1.01794 0.90736 1.21442 1.05721 0.91261 1.02105 1.19632 0.97277 0.92958 0.87300 1.86159 1.77725 1.38090 1.23494 1.22989 0.98514 0.93670 0.84003 1.18984 0.95165 0.95275 0.91662 1.21426 1.43616 0.93851 0.99333 0.90676 1.26088 0.95331 0.96463 1.02001 1.70141 1.46918 1.11304 1.28843 0.85192 0.77791 0.79065 0.77733 1.17806 1.20353 1.20300 1.17393 1.09070 0.76636 0.95472 1.91445 1.95005 1.29547 1.96961 1.20889 0.99915 0.95201 0.96066 0.90469 0.90795 0.91951 0.76359 0.81503 0.83528 0.91348 0.91484 0.98598 0.98525 0.92445 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.51 71.98 0.68 -1.18 16 2 C 0.16 2.08 3.83 29.85 0.11 2.20 16 3 H 0.12 1.35 8.00 -2.39 -0.02 1.33 16 4 O -0.57 -8.83 13.19 -148.98 -1.96 -10.79 16 5 C -0.13 -2.47 4.98 -19.85 -0.10 -2.57 16 6 C -0.07 -1.37 9.66 22.26 0.22 -1.16 16 7 C -0.19 -5.12 9.04 22.36 0.20 -4.92 16 8 C 0.07 2.63 6.69 22.53 0.15 2.79 16 9 O -0.34 -14.92 10.00 -93.05 -0.93 -15.85 16 10 C 0.08 3.56 4.68 71.98 0.34 3.89 16 11 C 0.03 1.45 5.34 29.85 0.16 1.61 16 12 C -0.54 -30.54 9.11 25.60 0.23 -30.30 16 13 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 14 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 15 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 16 Si 0.98 43.20 29.54 68.60 2.03 45.22 16 17 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 20 C 0.03 1.09 7.31 22.45 0.16 1.25 16 21 F -0.15 -5.47 17.11 44.97 0.77 -4.70 16 22 C -0.10 -2.28 9.29 22.30 0.21 -2.07 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 26 H 0.39 3.62 7.49 -74.06 -0.55 3.06 16 27 H 0.17 2.08 8.03 -2.91 -0.02 2.06 16 28 H 0.15 3.80 6.30 -2.91 -0.02 3.79 16 29 H 0.07 2.70 7.66 -2.39 -0.02 2.68 16 30 H 0.07 2.67 7.66 -2.39 -0.02 2.65 16 31 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.16 2.52 6.77 -2.91 -0.02 2.50 16 Total: -1.00 -70.99 298.02 3.58 -67.41 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.56 Total: 5.57 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 2.83 Total: -30.02 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.28 Total: -56.86 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -2.90 Total: -26.64 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.77 Total: -4.70 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -70.99 3.58 -67.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127081598.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.253 kcal (2) G-P(sol) polarization free energy of solvation -70.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds