Wall clock time and date at job start Mon Mar 30 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.46921 * 2 1 4 4 C 1.46898 * 111.00007 * 167.13854 * 3 2 1 5 5 C 1.50695 * 109.47408 * 287.43272 * 4 3 2 6 6 H 1.08002 * 120.00214 * 354.29215 * 5 4 3 7 7 C 1.37877 * 120.00043 * 174.01017 * 5 4 3 8 8 N 1.31508 * 120.00200 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00006 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47106 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47501 * 120.00242 * 9 7 5 12 12 H 1.48506 * 109.47273 * 240.00102 * 9 7 5 13 13 C 1.40021 * 111.00017 * 291.09290 * 3 2 1 14 14 C 1.38701 * 120.08832 * 295.77577 * 13 3 2 15 15 C 1.38259 * 120.01182 * 179.71874 * 14 13 3 16 16 C 1.38260 * 120.20405 * 0.55453 * 15 14 13 17 17 C 1.38355 * 120.17586 * 359.72098 * 16 15 14 18 18 Cl 1.73601 * 120.00556 * 179.97438 * 17 16 15 19 19 C 1.38754 * 119.98109 * 359.97438 * 17 16 15 20 20 N 1.40106 * 120.09937 * 180.02562 * 19 17 16 21 21 H 1.09003 * 109.47307 * 176.56953 * 1 2 3 22 22 H 1.09008 * 109.47429 * 296.56493 * 1 2 3 23 23 H 1.08994 * 109.47279 * 56.57084 * 1 2 3 24 24 H 1.08993 * 109.47236 * 239.99935 * 2 1 3 25 25 H 1.09002 * 109.47196 * 119.99673 * 2 1 3 26 26 H 1.09006 * 109.47170 * 167.43376 * 4 3 2 27 27 H 1.09004 * 109.47127 * 47.43524 * 4 3 2 28 28 H 0.96996 * 120.00691 * 180.02562 * 8 7 5 29 29 H 1.07996 * 119.99452 * 359.97234 * 14 13 3 30 30 H 1.08000 * 119.89407 * 180.24991 * 15 14 13 31 31 H 1.08001 * 119.90867 * 179.74501 * 16 15 14 32 32 H 0.97001 * 119.99957 * 179.97438 * 20 19 17 33 33 H 0.97003 * 120.00053 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4556 1.4357 0.3053 5 6 3.6700 1.1294 1.7651 6 1 2.8212 1.0092 2.4220 7 6 4.9497 0.9969 2.2610 8 7 5.9832 1.1383 1.4602 9 14 5.2154 0.6165 4.0704 10 1 3.9003 0.5071 4.7516 11 1 5.9508 -0.6668 4.2038 12 1 6.0064 1.7074 4.6947 13 6 1.7433 2.0149 -1.2196 14 6 2.3309 1.5547 -2.3887 15 6 2.0524 2.1743 -3.5930 16 6 1.1977 3.2602 -3.6352 17 6 0.6115 3.7295 -2.4732 18 17 -0.4605 5.0937 -2.5313 19 6 0.8808 3.1095 -1.2614 20 7 0.2882 3.5824 -0.0832 21 1 -0.3634 -1.0258 -0.0615 22 1 -0.3634 0.4596 0.9192 23 1 -0.3633 0.5661 -0.8576 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8394 2.4314 0.0828 27 1 3.9823 0.6993 -0.3017 28 1 6.8834 1.0447 1.8089 29 1 3.0028 0.7098 -2.3589 30 1 2.5079 1.8118 -4.5027 31 1 0.9867 3.7430 -4.5780 32 1 0.4771 3.1476 0.7630 33 1 -0.3111 4.3446 -0.1138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132675863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:07 Heat of formation + Delta-G solvation = 18.267458 kcal Electronic energy + Delta-G solvation = -16786.383990 eV Core-core repulsion = 14065.460224 eV Total energy + Delta-G solvation = -2720.923765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.59689 -36.73867 -35.63853 -34.05014 -32.68489 -30.49358 -29.14377 -28.13553 -25.96506 -22.93479 -22.40524 -21.58490 -19.90339 -17.09791 -16.77242 -16.10364 -15.66231 -14.98111 -14.23720 -14.20670 -13.90943 -13.84252 -13.20668 -13.04711 -12.49395 -12.20826 -11.78140 -11.44904 -11.28908 -11.14104 -11.02748 -10.79000 -10.67768 -10.48684 -10.37940 -10.25799 -10.00322 -9.33935 -8.48963 -8.22190 -7.50483 -7.07102 -6.06878 -4.09262 1.57421 1.90702 2.43445 3.27773 3.35704 3.39714 4.07937 4.29159 4.37739 4.76507 5.28267 5.29622 5.41030 5.63921 5.71290 5.79162 5.93321 5.99524 6.15024 6.31049 6.39578 6.56822 6.68644 6.74044 6.88705 7.00293 7.28439 7.29673 7.72068 7.84230 8.04475 8.14598 8.24662 8.56935 8.98891 9.55358 11.03360 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.027497 B = 0.005841 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.058669 B = 4792.397095 C = 4833.492865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 N -0.501 5.501 4 C 0.200 3.800 5 C -0.508 4.508 6 H 0.065 0.935 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.049 3.951 14 C -0.098 4.098 15 C -0.164 4.164 16 C -0.079 4.079 17 C -0.120 4.120 18 Cl -0.089 7.089 19 C 0.248 3.752 20 N -0.859 5.859 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.046 0.954 24 H 0.024 0.976 25 H 0.086 0.914 26 H 0.026 0.974 27 H 0.001 0.999 28 H 0.261 0.739 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.413 0.587 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.000 2.495 -7.549 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 N -0.224 5.224 4 C 0.076 3.924 5 C -0.547 4.547 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.050 4.050 14 C -0.120 4.120 15 C -0.186 4.186 16 C -0.098 4.098 17 C -0.152 4.152 18 Cl -0.061 7.061 19 C 0.139 3.861 20 N -0.398 5.398 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.105 0.895 26 H 0.044 0.956 27 H 0.019 0.981 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.245 0.755 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.127 2.839 -7.138 13.521 hybrid contribution 0.597 -0.316 0.583 0.893 sum -10.530 2.523 -6.554 12.657 Atomic orbital electron populations 1.21770 0.96420 1.00292 1.01651 1.22021 0.94184 0.88998 1.01154 1.59713 1.21473 1.15636 1.25554 1.19794 0.79115 0.96845 0.96615 1.21167 0.92062 1.47730 0.93701 0.91709 1.24990 0.96011 0.95528 0.98028 1.69964 0.98395 1.50184 1.35053 0.86451 0.78213 0.77822 0.84973 1.19656 1.21102 1.21054 1.18425 0.99144 0.96638 0.90760 1.21646 0.98122 0.99575 0.92609 1.20653 1.01923 0.98175 0.97810 1.20650 0.96567 0.96492 0.96075 1.20134 1.04724 0.96128 0.94217 1.98294 1.64821 1.44440 1.98507 1.17345 0.91542 0.91542 0.85700 1.42571 1.52442 1.37053 1.07697 0.93283 0.92525 0.93474 0.95769 0.89539 0.95557 0.98071 0.92917 0.85915 0.86139 0.85848 0.75515 0.77998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.98 37.16 0.37 -1.85 16 2 C 0.06 1.17 5.43 -3.83 -0.02 1.15 16 3 N -0.50 -10.24 3.58 -172.27 -0.62 -10.86 16 4 C 0.20 5.02 4.23 -4.98 -0.02 5.00 16 5 C -0.51 -13.71 8.37 -34.44 -0.29 -14.00 16 6 H 0.06 1.73 7.79 -52.49 -0.41 1.32 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.05 0.92 3.62 -83.51 -0.30 0.62 16 14 C -0.10 -1.72 8.58 -39.40 -0.34 -2.06 16 15 C -0.16 -2.46 10.04 -39.57 -0.40 -2.85 16 16 C -0.08 -1.13 9.82 -39.53 -0.39 -1.52 16 17 C -0.12 -1.85 6.33 -39.35 -0.25 -2.10 16 18 Cl -0.09 -1.19 27.59 -51.86 -1.43 -2.62 16 19 C 0.25 4.22 6.71 -83.44 -0.56 3.66 16 20 N -0.86 -13.14 9.04 32.57 0.29 -12.85 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 23 H 0.05 0.74 7.33 -51.93 -0.38 0.36 16 24 H 0.02 0.44 7.12 -51.93 -0.37 0.07 16 25 H 0.09 1.74 7.23 -51.93 -0.38 1.36 16 26 H 0.03 0.73 7.97 -51.93 -0.41 0.32 16 27 H 0.00 0.04 7.65 -51.93 -0.40 -0.36 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.12 2.18 7.28 -52.49 -0.38 1.80 16 30 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.41 6.66 8.11 -40.82 -0.33 6.33 16 33 H 0.39 5.18 7.51 -40.82 -0.31 4.87 16 LS Contribution 291.61 15.07 4.39 4.39 Total: -1.00 -28.29 291.61 -8.12 -36.41 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.19 Total: 7.29 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.29 Total: -12.50 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.41 Total: -49.12 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.43 Total: -2.62 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.29 -8.12 -36.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132675863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.680 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds