Wall clock time and date at job start Mon Mar 30 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.46921 * 2 1 4 4 C 1.46898 * 111.00007 * 167.13854 * 3 2 1 5 5 C 1.50695 * 109.47408 * 287.43272 * 4 3 2 6 6 H 1.08002 * 120.00214 * 354.29215 * 5 4 3 7 7 C 1.37877 * 120.00043 * 174.01017 * 5 4 3 8 8 N 1.31508 * 120.00200 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00006 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47106 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47501 * 120.00242 * 9 7 5 12 12 H 1.48506 * 109.47273 * 240.00102 * 9 7 5 13 13 C 1.40021 * 111.00017 * 291.09290 * 3 2 1 14 14 C 1.38701 * 120.08832 * 295.77577 * 13 3 2 15 15 C 1.38259 * 120.01182 * 179.71874 * 14 13 3 16 16 C 1.38260 * 120.20405 * 0.55453 * 15 14 13 17 17 C 1.38355 * 120.17586 * 359.72098 * 16 15 14 18 18 Cl 1.73601 * 120.00556 * 179.97438 * 17 16 15 19 19 C 1.38754 * 119.98109 * 359.97438 * 17 16 15 20 20 N 1.40106 * 120.09937 * 180.02562 * 19 17 16 21 21 H 1.09003 * 109.47307 * 176.56953 * 1 2 3 22 22 H 1.09008 * 109.47429 * 296.56493 * 1 2 3 23 23 H 1.08994 * 109.47279 * 56.57084 * 1 2 3 24 24 H 1.08993 * 109.47236 * 239.99935 * 2 1 3 25 25 H 1.09002 * 109.47196 * 119.99673 * 2 1 3 26 26 H 1.09006 * 109.47170 * 167.43376 * 4 3 2 27 27 H 1.09004 * 109.47127 * 47.43524 * 4 3 2 28 28 H 0.96996 * 120.00691 * 180.02562 * 8 7 5 29 29 H 1.07996 * 119.99452 * 359.97234 * 14 13 3 30 30 H 1.08000 * 119.89407 * 180.24991 * 15 14 13 31 31 H 1.08001 * 119.90867 * 179.74501 * 16 15 14 32 32 H 0.97001 * 119.99957 * 179.97438 * 20 19 17 33 33 H 0.97003 * 120.00053 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4556 1.4357 0.3053 5 6 3.6700 1.1294 1.7651 6 1 2.8212 1.0092 2.4220 7 6 4.9497 0.9969 2.2610 8 7 5.9832 1.1383 1.4602 9 14 5.2154 0.6165 4.0704 10 1 3.9003 0.5071 4.7516 11 1 5.9508 -0.6668 4.2038 12 1 6.0064 1.7074 4.6947 13 6 1.7433 2.0149 -1.2196 14 6 2.3309 1.5547 -2.3887 15 6 2.0524 2.1743 -3.5930 16 6 1.1977 3.2602 -3.6352 17 6 0.6115 3.7295 -2.4732 18 17 -0.4605 5.0937 -2.5313 19 6 0.8808 3.1095 -1.2614 20 7 0.2882 3.5824 -0.0832 21 1 -0.3634 -1.0258 -0.0615 22 1 -0.3634 0.4596 0.9192 23 1 -0.3633 0.5661 -0.8576 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8394 2.4314 0.0828 27 1 3.9823 0.6993 -0.3017 28 1 6.8834 1.0447 1.8089 29 1 3.0028 0.7098 -2.3589 30 1 2.5079 1.8118 -4.5027 31 1 0.9867 3.7430 -4.5780 32 1 0.4771 3.1476 0.7630 33 1 -0.3111 4.3446 -0.1138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132675863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:07 Heat of formation + Delta-G solvation = 1.211949 kcal Electronic energy + Delta-G solvation = -16787.123572 eV Core-core repulsion = 14065.460224 eV Total energy + Delta-G solvation = -2721.663347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95722 -38.10162 -36.93914 -35.30485 -34.73510 -31.90109 -30.69169 -29.52709 -27.71947 -24.44925 -24.14293 -22.88743 -21.37040 -18.72013 -18.17459 -17.72522 -17.08113 -16.75191 -15.88486 -15.59107 -15.32836 -15.09161 -14.61382 -14.37352 -14.25689 -13.98663 -13.13898 -12.94384 -12.76048 -12.71740 -12.44491 -12.32749 -12.25849 -11.96489 -11.89079 -11.72950 -11.52944 -11.33635 -10.61906 -9.52117 -9.18971 -8.34717 -8.18018 -6.29810 0.27907 0.64560 1.24362 1.41529 1.42574 1.55648 2.40473 2.79343 3.05340 3.13369 3.23084 4.09900 4.13639 4.25345 4.42275 4.48861 4.62625 4.73211 4.80039 4.99267 5.07376 5.13000 5.19620 5.26797 5.37657 5.46179 5.62394 5.68847 5.83089 6.09736 6.26245 6.48004 6.86643 6.89174 7.04581 7.40133 8.91393 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.027497 B = 0.005841 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.058669 B = 4792.397095 C = 4833.492865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.062 3.938 3 N -0.495 5.495 4 C 0.221 3.779 5 C -0.518 4.518 6 H 0.066 0.934 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.016 3.984 14 C -0.113 4.113 15 C -0.160 4.160 16 C -0.069 4.069 17 C -0.125 4.125 18 Cl -0.067 7.067 19 C 0.239 3.761 20 N -0.854 5.854 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.021 0.979 25 H 0.066 0.934 26 H -0.009 1.009 27 H -0.029 1.029 28 H 0.263 0.737 29 H 0.108 0.892 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.409 0.591 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.506 2.931 -7.865 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 N -0.217 5.217 4 C 0.096 3.904 5 C -0.556 4.556 6 H 0.085 0.915 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.208 1.208 13 C -0.083 4.083 14 C -0.134 4.134 15 C -0.181 4.181 16 C -0.088 4.088 17 C -0.157 4.157 18 Cl -0.039 7.039 19 C 0.129 3.871 20 N -0.393 5.393 21 H 0.091 0.909 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.009 0.991 27 H -0.011 1.011 28 H 0.072 0.928 29 H 0.126 0.874 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.239 0.761 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -12.674 3.288 -7.464 15.072 hybrid contribution 1.016 -0.389 0.566 1.226 sum -11.658 2.898 -6.898 13.853 Atomic orbital electron populations 1.21631 0.93465 1.01821 1.01652 1.22048 0.96492 0.87917 0.99985 1.59569 1.18027 1.16746 1.27345 1.19339 0.81964 0.93660 0.95460 1.21468 0.92280 1.47304 0.94589 0.91542 1.25897 0.95717 0.95261 1.02723 1.70096 0.98895 1.51301 1.37252 0.85343 0.78440 0.77601 0.79262 1.18502 1.20549 1.20759 1.18512 1.01405 0.98146 0.90243 1.21668 0.98337 0.99781 0.93620 1.20935 1.01609 0.97884 0.97702 1.21044 0.95044 0.95670 0.97001 1.20306 1.04865 0.96580 0.93943 1.98303 1.63987 1.43130 1.98447 1.17415 0.91612 0.91229 0.86809 1.42523 1.52417 1.37278 1.07089 0.90924 0.92336 0.93539 0.96060 0.91549 0.99050 1.01072 0.92770 0.87398 0.83342 0.82637 0.76066 0.76825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.98 71.98 0.72 -3.11 16 2 C 0.06 2.36 5.43 86.30 0.47 2.83 16 3 N -0.50 -20.84 3.58 -698.94 -2.50 -23.35 16 4 C 0.22 11.65 4.23 85.56 0.36 12.01 16 5 C -0.52 -28.71 8.37 25.60 0.21 -28.50 16 6 H 0.07 3.59 7.79 -2.91 -0.02 3.56 16 7 C 0.00 0.11 5.46 84.66 0.46 0.57 16 8 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 9 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 C 0.02 0.60 3.62 38.23 0.14 0.74 16 14 C -0.11 -4.01 8.58 22.39 0.19 -3.81 16 15 C -0.16 -4.52 10.04 22.28 0.22 -4.29 16 16 C -0.07 -1.79 9.82 22.30 0.22 -1.57 16 17 C -0.12 -3.61 6.33 22.42 0.14 -3.46 16 18 Cl -0.07 -1.62 27.59 -2.72 -0.08 -1.69 16 19 C 0.24 7.96 6.71 38.23 0.26 8.22 16 20 N -0.85 -25.53 9.04 -50.88 -0.46 -25.99 16 21 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.05 1.40 7.33 -2.39 -0.02 1.38 16 24 H 0.02 0.80 7.12 -2.39 -0.02 0.79 16 25 H 0.07 2.75 7.23 -2.39 -0.02 2.73 16 26 H -0.01 -0.51 7.97 -2.38 -0.02 -0.53 16 27 H -0.03 -1.64 7.65 -2.38 -0.02 -1.66 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.11 4.04 7.28 -2.91 -0.02 4.02 16 30 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.41 13.10 8.11 -92.71 -0.75 12.34 16 33 H 0.40 10.09 7.51 -92.71 -0.70 9.39 16 Total: -1.00 -61.82 291.61 2.35 -59.46 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.32 Total: 21.92 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 3.40 Total: -20.38 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -2.68 Total: -105.09 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.69 kcal Total: -61.82 2.35 -59.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132675863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.676 kcal (2) G-P(sol) polarization free energy of solvation -61.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds