Wall clock time and date at job start Mon Mar 30 2020 06:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.47016 * 2 1 4 4 C 1.35739 * 116.99787 * 180.02562 * 3 2 1 5 5 C 1.39044 * 119.82232 * 359.97421 * 4 3 2 6 6 C 1.37733 * 120.20274 * 179.71648 * 5 4 3 7 7 F 1.35107 * 120.07682 * 180.27827 * 6 5 4 8 8 C 1.41135 * 119.84231 * 0.56367 * 6 5 4 9 9 C 1.41113 * 120.17344 * 179.74134 * 8 6 5 10 10 H 1.07997 * 120.00316 * 335.28289 * 9 8 6 11 11 C 1.39862 * 119.99566 * 155.00650 * 9 8 6 12 12 N 1.30917 * 120.00046 * 342.13017 * 11 9 8 13 13 Si 1.86801 * 119.99781 * 162.12981 * 11 9 8 14 14 H 1.48498 * 109.46985 * 89.99987 * 13 11 9 15 15 H 1.48495 * 109.47051 * 209.99763 * 13 11 9 16 16 H 1.48493 * 109.47202 * 329.99928 * 13 11 9 17 17 C 1.40781 * 119.64598 * 359.46114 * 8 6 5 18 18 C 1.37713 * 119.79311 * 0.26014 * 17 8 6 19 19 O 1.35998 * 119.92424 * 179.97438 * 18 17 8 20 20 C 1.42902 * 116.99664 * 359.97438 * 19 18 17 21 21 C 1.53001 * 109.46899 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.46883 * 299.99513 * 1 2 3 23 23 H 1.08996 * 109.47324 * 60.00355 * 1 2 3 24 24 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47208 * 239.99814 * 2 1 3 26 26 H 1.09003 * 109.47570 * 119.99964 * 2 1 3 27 27 H 1.08005 * 119.89578 * 359.97438 * 5 4 3 28 28 H 0.96994 * 119.99789 * 180.02562 * 12 11 9 29 29 H 1.08000 * 120.10805 * 180.23126 * 17 8 6 30 30 H 1.08998 * 109.47510 * 300.00491 * 20 19 18 31 31 H 1.09002 * 109.47100 * 60.00593 * 20 19 18 32 32 H 1.08996 * 109.47396 * 180.02562 * 21 20 19 33 33 H 1.09005 * 109.46946 * 300.00003 * 21 20 19 34 34 H 1.08996 * 109.47102 * 59.99490 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5252 -0.0005 5 6 4.1955 0.4198 -0.0005 6 6 5.5622 0.5912 -0.0070 7 9 6.3794 -0.4846 -0.0126 8 6 6.1067 1.8933 -0.0015 9 6 7.5059 2.0769 -0.0026 10 1 8.1524 1.3030 0.3840 11 6 8.0556 3.2588 -0.5095 12 7 7.3411 4.0320 -1.2877 13 14 9.8094 3.7341 -0.0762 14 1 10.7401 3.1625 -1.0823 15 1 9.9342 5.2138 -0.0709 16 1 10.1480 3.2039 1.2688 17 6 5.2467 3.0078 -0.0011 18 6 3.8825 2.8194 -0.0005 19 8 3.0492 3.8942 0.0004 20 6 3.6580 5.1870 0.0014 21 6 2.5702 6.2629 0.0030 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.7778 -0.5761 0.0003 28 1 7.7225 4.8514 -1.6396 29 1 5.6554 4.0075 -0.0008 30 1 4.2778 5.2962 0.8913 31 1 4.2774 5.2975 -0.8887 32 1 3.0344 7.2491 0.0032 33 1 1.9500 6.1539 -0.8868 34 1 1.9510 6.1522 0.8931 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149429787.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:44 Heat of formation + Delta-G solvation = -116.333947 kcal Electronic energy + Delta-G solvation = -18925.081589 eV Core-core repulsion = 15737.691943 eV Total energy + Delta-G solvation = -3187.389646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.27061 -39.22804 -37.65710 -35.83487 -33.48473 -31.38161 -30.91436 -29.22370 -27.95392 -25.17644 -23.48756 -22.55016 -20.90312 -20.28165 -17.93616 -17.30948 -16.26339 -15.68757 -15.55531 -15.17193 -15.09713 -14.49215 -14.01611 -13.55429 -13.22638 -13.12130 -12.74615 -12.45283 -12.30308 -12.15131 -12.11955 -11.69954 -11.55874 -11.30553 -10.86089 -10.80001 -10.56977 -10.51922 -10.26317 -10.01991 -9.75235 -9.60652 -9.02754 -7.51062 -6.99334 -6.64679 -4.42200 2.59988 2.63194 3.01414 3.04491 3.12076 3.85056 4.11441 4.12533 4.42528 5.28750 5.36053 5.41991 5.47439 5.55706 5.63801 5.76062 5.80979 5.88250 5.97304 6.08776 6.12382 6.25605 6.29378 6.34804 6.58318 6.72388 6.80406 7.05344 7.12253 7.50734 7.76003 7.86149 8.13582 8.31344 8.54716 8.66107 8.85942 10.04450 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.018905 B = 0.007914 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.702634 B = 3537.325083 C = 4912.501064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 O -0.314 6.314 4 C -0.002 4.002 5 C -0.171 4.171 6 C -0.025 4.025 7 F -0.160 7.160 8 C 0.093 3.907 9 C -0.451 4.451 10 H 0.084 0.916 11 C 0.077 3.923 12 N -0.792 5.792 13 Si 0.912 3.088 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.259 1.259 17 C -0.205 4.205 18 C 0.115 3.885 19 O -0.318 6.318 20 C 0.058 3.942 21 C -0.147 4.147 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.115 0.885 28 H 0.283 0.717 29 H 0.144 0.856 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.217 0.944 1.649 6.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.230 6.230 4 C -0.046 4.046 5 C -0.191 4.191 6 C -0.045 4.045 7 F -0.139 7.139 8 C 0.090 3.910 9 C -0.480 4.480 10 H 0.102 0.898 11 C -0.142 4.142 12 N -0.417 5.417 13 Si 0.736 3.264 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.183 1.183 17 C -0.225 4.225 18 C 0.070 3.930 19 O -0.233 6.233 20 C -0.018 4.018 21 C -0.204 4.204 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.161 0.839 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.524 1.275 1.502 6.815 hybrid contribution 1.307 -0.154 0.028 1.316 sum -5.217 1.121 1.531 5.551 Atomic orbital electron populations 1.21718 0.93965 1.01763 1.03005 1.22480 0.94726 0.84204 1.00378 1.85960 1.19436 1.26340 1.91222 1.17384 0.81391 0.90326 1.15474 1.20343 0.92494 0.96838 1.09420 1.17444 0.86335 0.83395 1.17339 1.91273 1.73083 1.54300 1.95288 1.17330 0.94225 0.88539 0.90918 1.19409 0.91625 1.01725 1.35222 0.89778 1.25911 1.00544 0.95364 0.92336 1.69841 1.38517 1.11563 1.21772 0.86239 0.81512 0.78231 0.80432 1.19293 1.19940 1.18278 1.21116 0.88948 1.00654 1.11767 1.18121 0.89058 0.83849 1.01942 1.85993 1.34731 1.12738 1.89865 1.22568 0.95839 0.81836 1.01580 1.21733 0.99026 0.96904 1.02736 0.91966 0.91949 0.91319 0.93221 0.93246 0.86704 0.90636 0.83883 0.92929 0.91835 0.91218 0.92048 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 37.16 0.38 -1.51 16 2 C 0.06 0.96 5.45 37.16 0.20 1.16 16 3 O -0.31 -6.77 9.90 -33.56 -0.33 -7.10 16 4 C 0.00 -0.04 6.73 -38.67 -0.26 -0.30 16 5 C -0.17 -4.01 8.98 -39.47 -0.35 -4.37 16 6 C -0.02 -0.64 7.30 -38.67 -0.28 -0.92 16 7 F -0.16 -4.06 16.70 2.25 0.04 -4.03 16 8 C 0.09 2.51 5.58 -106.75 -0.60 1.92 16 9 C -0.45 -11.99 8.76 -37.88 -0.33 -12.32 16 10 H 0.08 2.21 7.73 -52.49 -0.41 1.80 16 11 C 0.08 1.88 5.13 -17.33 -0.09 1.79 16 12 N -0.79 -19.65 10.97 55.54 0.61 -19.04 16 13 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 14 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 15 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 16 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 17 C -0.20 -5.24 7.66 -38.81 -0.30 -5.54 16 18 C 0.11 2.83 6.70 -39.16 -0.26 2.57 16 19 O -0.32 -7.17 9.91 -34.37 -0.34 -7.51 16 20 C 0.06 1.07 5.46 37.16 0.20 1.27 16 21 C -0.15 -2.09 10.28 37.16 0.38 -1.71 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.80 7.65 -51.93 -0.40 0.40 16 26 H 0.05 0.78 7.65 -51.93 -0.40 0.38 16 27 H 0.12 2.35 6.26 -52.48 -0.33 2.03 16 28 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 29 H 0.14 3.61 4.37 -52.49 -0.23 3.38 16 30 H 0.05 0.96 7.65 -51.93 -0.40 0.56 16 31 H 0.06 1.23 7.65 -51.93 -0.40 0.83 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 292.81 15.07 4.41 4.41 Total: -1.00 -28.81 292.81 -6.17 -34.99 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.22 Total: 3.00 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.30 Total: -17.94 kcal Atomic # 7 Polarization: -19.65 SS G_CDS: 0.61 Total: -19.04 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.67 Total: -14.61 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.03 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.81 -6.17 -34.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149429787.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.348 kcal (2) G-P(sol) polarization free energy of solvation -28.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds