Wall clock time and date at job start Mon Mar 30 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47069 * 2 1 4 4 C 1.50700 * 109.47014 * 119.99615 * 2 1 3 5 5 H 1.08001 * 119.99750 * 119.99921 * 4 2 1 6 6 C 1.37883 * 120.00395 * 300.00381 * 4 2 1 7 7 N 1.31511 * 120.00240 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99533 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47129 * 90.00133 * 8 6 4 10 10 H 1.48496 * 109.47016 * 209.99921 * 8 6 4 11 11 H 1.48496 * 109.47436 * 330.00265 * 8 6 4 12 12 N 1.46896 * 109.47335 * 239.99727 * 2 1 3 13 13 C 1.46897 * 111.00156 * 183.95588 * 12 2 1 14 14 C 1.40026 * 111.00054 * 59.99862 * 12 2 1 15 15 C 1.38693 * 120.08716 * 59.99973 * 14 12 2 16 16 C 1.38255 * 120.01963 * 179.97438 * 15 14 12 17 17 C 1.38260 * 120.19432 * 0.02562 * 16 15 14 18 18 C 1.38357 * 120.18504 * 359.97413 * 17 16 15 19 19 Cl 1.73599 * 120.01134 * 180.02562 * 18 17 16 20 20 C 1.38754 * 119.97521 * 0.30484 * 18 17 16 21 21 N 1.40104 * 120.10002 * 179.72062 * 20 18 17 22 22 H 1.08996 * 109.46830 * 60.00463 * 1 2 3 23 23 H 1.09009 * 109.46444 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47025 * 299.99992 * 1 2 3 25 25 H 0.96991 * 119.99874 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.46628 * 296.04587 * 13 12 2 27 27 H 1.08996 * 109.47603 * 56.04356 * 13 12 2 28 28 H 1.09000 * 109.47114 * 176.05050 * 13 12 2 29 29 H 1.08005 * 119.99308 * 359.97438 * 15 14 12 30 30 H 1.07996 * 119.90241 * 179.97438 * 16 15 14 31 31 H 1.08007 * 119.91075 * 180.02562 * 17 16 15 32 32 H 0.96998 * 119.99857 * 359.97438 * 21 20 18 33 33 H 0.96995 * 120.00326 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0198 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1869 14 6 1.5708 -0.0577 -2.3639 15 6 1.9083 1.2651 -2.6089 16 6 1.4647 1.8904 -3.7594 17 6 0.6837 1.2010 -4.6686 18 6 0.3421 -0.1187 -4.4324 19 17 -0.6381 -0.9802 -5.5773 20 6 0.7785 -0.7517 -3.2773 21 7 0.4293 -2.0863 -3.0327 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.9031 -0.5279 4.4375 26 1 3.9192 0.2043 -1.2299 27 1 3.8071 -1.2915 -0.2718 28 1 3.8165 -1.3722 -2.0499 29 1 2.5178 1.8068 -1.9008 30 1 1.7283 2.9205 -3.9481 31 1 0.3400 1.6939 -5.5661 32 1 -0.1187 -2.5691 -3.6711 33 1 0.7354 -2.5276 -2.2250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163080838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:37 Heat of formation + Delta-G solvation = 34.894860 kcal Electronic energy + Delta-G solvation = -17066.014032 eV Core-core repulsion = 14345.811285 eV Total energy + Delta-G solvation = -2720.202747 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75229 -36.92703 -35.82411 -34.16154 -32.74953 -30.39845 -29.28872 -28.17960 -25.32486 -24.36306 -22.44122 -21.55255 -19.61915 -17.27240 -16.93032 -16.33351 -15.71958 -15.24913 -14.28508 -14.16253 -13.96433 -13.70891 -13.32057 -13.11881 -12.59980 -12.20485 -11.92167 -11.78831 -11.50772 -11.20749 -10.95158 -10.81347 -10.63178 -10.55372 -10.42356 -10.18100 -9.56396 -9.16048 -8.63071 -8.33800 -7.64043 -7.17754 -6.13321 -4.12783 1.45712 1.79490 2.34344 3.23461 3.33918 3.35250 3.96650 4.19111 4.34535 4.59912 5.17705 5.21337 5.29529 5.54578 5.75126 5.86389 6.10607 6.15511 6.27691 6.34450 6.42091 6.50134 6.57271 6.73029 6.79022 6.84087 6.95860 7.20381 7.50228 7.66439 7.85275 8.11469 8.15491 8.59748 8.91492 9.48196 10.98981 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.006498 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.653006 B = 4307.682377 C = 4390.347435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.189 3.811 3 H 0.003 0.997 4 C -0.510 4.510 5 H 0.085 0.915 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.493 5.493 13 C 0.042 3.958 14 C 0.045 3.955 15 C -0.100 4.100 16 C -0.165 4.165 17 C -0.077 4.077 18 C -0.120 4.120 19 Cl -0.087 7.087 20 C 0.249 3.751 21 N -0.858 5.858 22 H 0.028 0.972 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.265 0.735 26 H 0.018 0.982 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.393 0.607 33 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 2.230 -15.252 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.083 3.917 3 H 0.020 0.980 4 C -0.548 4.548 5 H 0.103 0.897 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.215 5.215 13 C -0.105 4.105 14 C -0.054 4.054 15 C -0.122 4.122 16 C -0.186 4.186 17 C -0.096 4.096 18 C -0.152 4.152 19 Cl -0.058 7.058 20 C 0.140 3.860 21 N -0.397 5.397 22 H 0.047 0.953 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.221 0.779 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.899 1.651 -15.095 15.459 hybrid contribution -0.578 1.256 0.234 1.402 sum -3.477 2.907 -14.860 15.536 Atomic orbital electron populations 1.22115 0.98353 1.01164 0.98366 1.19767 0.91552 0.92662 0.87734 0.97951 1.20958 1.32224 1.13784 0.87814 0.89743 1.24891 0.95697 0.96553 0.95790 1.69866 1.45513 1.40178 0.97918 0.86911 0.80835 0.83867 0.76918 1.20537 1.22433 1.19358 1.59529 1.10569 1.51561 0.99792 1.22305 0.86239 0.99563 1.02418 1.18411 1.01193 0.91692 0.94114 1.21642 0.98674 0.94913 0.96922 1.20657 1.02460 1.00036 0.95433 1.20674 0.97703 0.91732 0.99482 1.20147 1.06837 0.94478 0.93729 1.98300 1.70130 1.77443 1.59942 1.17334 0.92175 0.85768 0.90748 1.42593 1.59248 1.09996 1.27905 0.95264 0.92322 0.93996 0.92534 0.96299 0.89269 0.93395 0.85873 0.86063 0.85743 0.77874 0.75429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.55 37.16 0.32 -2.83 16 2 C 0.19 4.32 1.43 -68.86 -0.10 4.22 16 3 H 0.00 0.07 6.19 -51.93 -0.32 -0.25 16 4 C -0.51 -13.61 8.46 -34.44 -0.29 -13.91 16 5 H 0.08 2.42 6.65 -52.49 -0.35 2.07 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -26.60 13.96 55.43 0.77 -25.82 16 8 Si 0.88 21.64 24.37 -169.99 -4.14 17.49 16 9 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 10 H -0.30 -7.28 7.11 56.52 0.40 -6.87 16 11 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 12 N -0.49 -9.70 3.78 -172.47 -0.65 -10.35 16 13 C 0.04 0.77 9.11 60.06 0.55 1.32 16 14 C 0.04 0.80 3.34 -83.50 -0.28 0.52 16 15 C -0.10 -1.66 8.58 -39.41 -0.34 -2.00 16 16 C -0.16 -2.31 10.04 -39.57 -0.40 -2.71 16 17 C -0.08 -1.04 9.82 -39.53 -0.39 -1.43 16 18 C -0.12 -1.75 6.33 -39.35 -0.25 -2.00 16 19 Cl -0.09 -1.10 27.59 -51.86 -1.43 -2.53 16 20 C 0.25 4.03 6.78 -83.44 -0.57 3.46 16 21 N -0.86 -12.49 9.04 32.57 0.29 -12.19 16 22 H 0.03 0.59 7.22 -51.93 -0.37 0.22 16 23 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 24 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.33 7.35 -51.93 -0.38 -0.05 16 27 H 0.09 1.81 6.10 -51.93 -0.32 1.49 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.12 2.05 7.02 -52.48 -0.37 1.68 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.39 4.92 7.51 -40.82 -0.31 4.61 16 33 H 0.41 6.36 8.11 -40.82 -0.33 6.03 16 LS Contribution 277.26 15.07 4.18 4.18 Total: -1.00 -28.38 277.26 -6.61 -34.99 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -3.79 Total: 7.66 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -1.84 Total: -13.42 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.42 Total: -48.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.49 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.43 Total: -2.53 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.38 -6.61 -34.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163080838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.885 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds