Wall clock time and date at job start Mon Mar 30 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47069 * 2 1 4 4 C 1.50700 * 109.47014 * 119.99615 * 2 1 3 5 5 H 1.08001 * 119.99750 * 119.99921 * 4 2 1 6 6 C 1.37883 * 120.00395 * 300.00381 * 4 2 1 7 7 N 1.31511 * 120.00240 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99533 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47129 * 90.00133 * 8 6 4 10 10 H 1.48496 * 109.47016 * 209.99921 * 8 6 4 11 11 H 1.48496 * 109.47436 * 330.00265 * 8 6 4 12 12 N 1.46896 * 109.47335 * 239.99727 * 2 1 3 13 13 C 1.46897 * 111.00156 * 183.95588 * 12 2 1 14 14 C 1.40026 * 111.00054 * 59.99862 * 12 2 1 15 15 C 1.38693 * 120.08716 * 59.99973 * 14 12 2 16 16 C 1.38255 * 120.01963 * 179.97438 * 15 14 12 17 17 C 1.38260 * 120.19432 * 0.02562 * 16 15 14 18 18 C 1.38357 * 120.18504 * 359.97413 * 17 16 15 19 19 Cl 1.73599 * 120.01134 * 180.02562 * 18 17 16 20 20 C 1.38754 * 119.97521 * 0.30484 * 18 17 16 21 21 N 1.40104 * 120.10002 * 179.72062 * 20 18 17 22 22 H 1.08996 * 109.46830 * 60.00463 * 1 2 3 23 23 H 1.09009 * 109.46444 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47025 * 299.99992 * 1 2 3 25 25 H 0.96991 * 119.99874 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.46628 * 296.04587 * 13 12 2 27 27 H 1.08996 * 109.47603 * 56.04356 * 13 12 2 28 28 H 1.09000 * 109.47114 * 176.05050 * 13 12 2 29 29 H 1.08005 * 119.99308 * 359.97438 * 15 14 12 30 30 H 1.07996 * 119.90241 * 179.97438 * 16 15 14 31 31 H 1.08007 * 119.91075 * 180.02562 * 17 16 15 32 32 H 0.96998 * 119.99857 * 359.97438 * 21 20 18 33 33 H 0.96995 * 120.00326 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9954 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0198 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1869 14 6 1.5708 -0.0577 -2.3639 15 6 1.9083 1.2651 -2.6089 16 6 1.4647 1.8904 -3.7594 17 6 0.6837 1.2010 -4.6686 18 6 0.3421 -0.1187 -4.4324 19 17 -0.6381 -0.9802 -5.5773 20 6 0.7785 -0.7517 -3.2773 21 7 0.4293 -2.0863 -3.0327 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.9031 -0.5279 4.4375 26 1 3.9192 0.2043 -1.2299 27 1 3.8071 -1.2915 -0.2718 28 1 3.8165 -1.3722 -2.0499 29 1 2.5178 1.8068 -1.9008 30 1 1.7283 2.9205 -3.9481 31 1 0.3400 1.6939 -5.5661 32 1 -0.1187 -2.5691 -3.6711 33 1 0.7354 -2.5276 -2.2250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163080838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:37 Heat of formation + Delta-G solvation = 16.164947 kcal Electronic energy + Delta-G solvation = -17066.826222 eV Core-core repulsion = 14345.811285 eV Total energy + Delta-G solvation = -2721.014937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03994 -38.27487 -37.03465 -35.31578 -34.70740 -32.20858 -30.56591 -29.39814 -27.16819 -25.96239 -23.84464 -22.82325 -21.20827 -18.96651 -18.19553 -17.75068 -17.16955 -16.93596 -15.84824 -15.47869 -15.21013 -15.07846 -14.93941 -14.55811 -14.21664 -13.96192 -13.54848 -13.09876 -12.89945 -12.65991 -12.42333 -12.32700 -12.20869 -12.05261 -11.81828 -11.55346 -11.45636 -11.13866 -10.74414 -9.53017 -9.20538 -8.34927 -8.28176 -6.31146 0.26953 0.64239 1.25097 1.29306 1.34169 1.43305 2.30439 2.78786 3.02938 3.05415 3.16496 4.09714 4.14554 4.33114 4.46874 4.52858 4.62540 4.66382 4.74179 4.77104 4.85194 4.96384 5.17082 5.20510 5.35381 5.43331 5.56375 5.67185 5.79357 6.05013 6.29216 6.49992 6.75283 6.88774 7.02720 7.33450 8.87077 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.006498 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.653006 B = 4307.682377 C = 4390.347435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.195 3.805 3 H -0.005 1.005 4 C -0.504 4.504 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.943 5.943 8 Si 0.940 3.060 9 H -0.270 1.270 10 H -0.298 1.298 11 H -0.254 1.254 12 N -0.493 5.493 13 C 0.047 3.953 14 C 0.015 3.985 15 C -0.111 4.111 16 C -0.159 4.159 17 C -0.067 4.067 18 C -0.125 4.125 19 Cl -0.069 7.069 20 C 0.240 3.760 21 N -0.855 5.855 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.034 0.966 25 H 0.266 0.734 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.401 0.599 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 3.756 -17.718 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.089 3.911 3 H 0.012 0.988 4 C -0.543 4.543 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.584 5.584 8 Si 0.768 3.232 9 H -0.196 1.196 10 H -0.226 1.226 11 H -0.178 1.178 12 N -0.214 5.214 13 C -0.100 4.100 14 C -0.084 4.084 15 C -0.132 4.132 16 C -0.180 4.180 17 C -0.086 4.086 18 C -0.158 4.158 19 Cl -0.040 7.040 20 C 0.130 3.870 21 N -0.394 5.394 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.133 0.867 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.232 0.768 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.193 3.171 -17.605 18.374 hybrid contribution -0.141 0.717 0.855 1.125 sum -4.334 3.889 -16.751 17.734 Atomic orbital electron populations 1.21975 0.97332 1.01066 0.98731 1.19527 0.92177 0.91746 0.87678 0.98794 1.21196 1.30901 1.12594 0.89589 0.93049 1.25641 0.97210 0.99496 0.95534 1.70003 1.47625 1.42262 0.98503 0.85990 0.79426 0.80647 0.77153 1.19592 1.22564 1.17795 1.59352 1.10826 1.51567 0.99703 1.22225 0.86154 0.99738 1.01901 1.18422 1.03400 0.92659 0.93945 1.21692 0.99023 0.94548 0.97934 1.20945 1.01577 1.01253 0.94241 1.21059 0.96304 0.91175 1.00055 1.20320 1.06770 0.95087 0.93574 1.98310 1.69521 1.77183 1.59018 1.17425 0.92194 0.86182 0.91162 1.42569 1.59259 1.09731 1.27883 0.93467 0.92710 0.94797 0.92537 0.95967 0.92003 0.91283 0.86686 0.83222 0.82779 0.76820 0.76050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.55 71.98 0.62 -5.11 16 2 C 0.20 8.90 1.43 44.17 0.06 8.97 16 3 H -0.01 -0.25 6.19 -2.39 -0.01 -0.27 16 4 C -0.50 -27.62 8.46 25.60 0.22 -27.41 16 5 H 0.05 3.10 6.65 -2.91 -0.02 3.08 16 6 C 0.02 1.08 5.45 84.66 0.46 1.54 16 7 N -0.94 -57.60 13.96 21.45 0.30 -57.30 16 8 Si 0.94 44.50 24.37 68.60 1.67 46.17 16 9 H -0.27 -12.31 6.87 99.48 0.68 -11.63 16 10 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.25 -11.30 6.53 99.48 0.65 -10.65 16 12 N -0.49 -19.30 3.78 -699.57 -2.64 -21.94 16 13 C 0.05 1.75 9.11 127.69 1.16 2.91 16 14 C 0.01 0.49 3.34 38.23 0.13 0.62 16 15 C -0.11 -3.43 8.58 22.38 0.19 -3.24 16 16 C -0.16 -3.89 10.04 22.28 0.22 -3.66 16 17 C -0.07 -1.54 9.82 22.30 0.22 -1.32 16 18 C -0.13 -3.28 6.33 22.42 0.14 -3.14 16 19 Cl -0.07 -1.53 27.59 -2.72 -0.08 -1.61 16 20 C 0.24 7.26 6.78 38.23 0.26 7.52 16 21 N -0.86 -23.67 9.04 -50.88 -0.46 -24.14 16 22 H 0.05 1.83 7.22 -2.39 -0.02 1.82 16 23 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 24 H 0.03 1.49 3.27 -2.39 -0.01 1.48 16 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.02 0.79 7.35 -2.39 -0.02 0.77 16 27 H 0.06 2.62 6.10 -2.39 -0.01 2.61 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.12 3.68 7.02 -2.91 -0.02 3.66 16 30 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.40 9.36 7.51 -92.71 -0.70 8.66 16 33 H 0.41 12.31 8.11 -92.71 -0.75 11.56 16 Total: -1.00 -61.06 277.26 2.10 -58.96 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.38 Total: 22.17 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 3.68 Total: -22.32 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -2.80 Total: -103.37 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.67 Total: 46.17 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -61.06 2.10 -58.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163080838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.125 kcal (2) G-P(sol) polarization free energy of solvation -61.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds