Wall clock time and date at job start Mon Mar 30 2020 07:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31776 * 122.74838 * 2 1 4 4 C 1.29027 * 117.12568 * 180.02562 * 3 2 1 5 5 S 1.70977 * 110.16578 * 359.97438 * 4 3 2 6 6 C 1.33635 * 122.74873 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.03862 * 0.03642 * 6 2 1 8 8 H 1.08994 * 109.47134 * 344.98577 * 7 6 2 9 9 C 1.53002 * 109.46980 * 104.98486 * 7 6 2 10 10 N 1.46906 * 109.47254 * 224.98026 * 7 6 2 11 11 C 1.46896 * 110.99870 * 155.00299 * 10 7 6 12 12 C 1.52995 * 109.46836 * 180.02562 * 11 10 7 13 13 C 1.53009 * 109.47026 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47006 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00008 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99872 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00291 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47507 * 90.00045 * 18 16 14 20 20 H 1.48500 * 109.47517 * 209.99994 * 18 16 14 21 21 H 1.48502 * 109.47141 * 330.00078 * 18 16 14 22 22 H 1.09001 * 109.47671 * 270.00063 * 1 2 3 23 23 H 1.09003 * 109.47133 * 30.00257 * 1 2 3 24 24 H 1.08999 * 109.47079 * 150.00052 * 1 2 3 25 25 H 1.07998 * 124.92077 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.46977 * 300.00102 * 9 7 6 27 27 H 1.08997 * 109.47575 * 59.99855 * 9 7 6 28 28 H 1.09001 * 109.47244 * 179.97438 * 9 7 6 29 29 H 1.00903 * 110.99748 * 278.95886 * 10 7 6 30 30 H 1.09002 * 109.46670 * 299.99972 * 11 10 7 31 31 H 1.08995 * 109.47298 * 60.00202 * 11 10 7 32 32 H 1.08998 * 109.47534 * 299.99408 * 12 11 10 33 33 H 1.09003 * 109.47614 * 60.00052 * 12 11 10 34 34 H 1.09002 * 109.46730 * 299.99657 * 13 12 11 35 35 H 1.08995 * 109.47048 * 59.99771 * 13 12 11 36 36 H 0.96996 * 120.00082 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 16 3.9332 -0.6731 -0.0004 6 6 2.2299 -1.1239 0.0005 7 6 1.6846 -2.5288 0.0004 8 1 0.6277 -2.5084 0.2660 9 6 1.8485 -3.1393 -1.3930 10 7 2.4202 -3.3398 0.9799 11 6 1.6046 -4.4685 1.4474 12 6 2.4023 -5.2874 2.4641 13 6 1.5526 -6.4628 2.9516 14 6 2.3386 -7.2697 3.9526 15 1 3.3437 -6.9742 4.2146 16 6 1.7745 -8.3854 4.5341 17 7 0.5502 -8.7450 4.2154 18 14 2.7489 -9.3861 5.7743 19 1 2.5038 -8.8565 7.1398 20 1 2.3208 -10.8066 5.7102 21 1 4.1969 -9.2908 5.4590 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 4.2059 1.8026 -0.0002 26 1 1.3028 -2.5377 -2.1198 27 1 2.9054 -3.1598 -1.6587 28 1 1.4546 -4.1557 -1.3930 29 1 3.2971 -3.6610 0.5977 30 1 0.6969 -4.0905 1.9178 31 1 1.3387 -5.1003 0.5999 32 1 3.3103 -5.6654 1.9942 33 1 2.6679 -4.6554 3.3116 34 1 0.6449 -6.0844 3.4218 35 1 1.2867 -7.0948 2.1044 36 1 0.1534 -9.5301 4.6241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167253680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:04 Heat of formation + Delta-G solvation = 21.556398 kcal Electronic energy + Delta-G solvation = -16058.854305 eV Core-core repulsion = 13475.949960 eV Total energy + Delta-G solvation = -2582.904345 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.99130 -37.29373 -34.13965 -32.49027 -31.26092 -29.30616 -27.38256 -25.91931 -24.90145 -22.83749 -21.72773 -20.30175 -18.90088 -17.94535 -16.44920 -15.93310 -15.26705 -15.00044 -14.61427 -14.33143 -13.94082 -13.60347 -13.28354 -13.06810 -12.62338 -12.56423 -12.26168 -12.19666 -11.72205 -11.52779 -11.38266 -11.07271 -10.85287 -10.60565 -10.52611 -9.74831 -9.70765 -9.41321 -9.23496 -9.05824 -8.76041 -8.34416 -8.27703 -5.99615 -4.01659 0.67960 1.34753 1.75265 2.71830 3.32643 3.38708 3.42225 4.11740 4.28748 4.48023 4.71156 4.91411 5.02667 5.13353 5.20419 5.36332 5.48904 5.55941 5.59183 5.66889 5.77863 5.81618 5.84085 5.98933 6.17790 6.27962 6.68312 6.71593 7.11208 7.22684 7.49488 7.65717 7.68078 7.82567 8.00617 8.43862 9.05489 9.62411 11.11845 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.037424 B = 0.003625 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.001525 B = 7723.226602 C = 7985.518137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.049 3.951 3 N -0.468 5.468 4 C 0.001 3.999 5 S 0.138 5.862 6 C -0.187 4.187 7 C 0.155 3.845 8 H 0.099 0.901 9 C -0.179 4.179 10 N -0.684 5.684 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.195 0.805 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.339 0.661 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.539 16.708 -12.088 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 N -0.182 5.182 4 C -0.297 4.297 5 S 0.392 5.608 6 C -0.309 4.309 7 C 0.042 3.958 8 H 0.117 0.883 9 C -0.238 4.238 10 N -0.314 5.314 11 C -0.068 4.068 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.212 0.788 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.002 17.011 -11.509 20.925 hybrid contribution -0.264 -1.057 -0.013 1.090 sum 3.738 15.954 -11.522 20.032 Atomic orbital electron populations 1.20345 0.87310 1.02973 1.03063 1.20155 0.98165 0.86138 1.03841 1.66148 1.05135 1.31594 1.15283 1.28212 0.95285 1.00392 1.05793 1.83984 1.07269 1.02665 1.66881 1.25793 0.95083 1.00044 1.09986 1.19915 0.98371 0.86394 0.91088 0.88306 1.22535 1.02457 1.01660 0.97193 1.60683 1.07000 1.24727 1.39013 1.22180 0.96894 0.90016 0.97731 1.21629 0.98513 0.97475 0.96890 1.19064 0.94985 0.91533 0.95945 1.21252 1.00536 1.10149 1.23796 0.92674 1.25028 0.94982 0.97551 0.96948 1.69966 1.13924 1.26114 1.43616 0.86594 0.80340 0.79343 0.81730 1.20650 1.21258 1.19876 0.90593 0.90842 0.90840 0.78796 0.91861 0.92256 0.91362 0.84283 0.91266 0.95348 0.93607 0.92510 0.96559 0.96787 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.81 36.00 0.35 -0.43 16 2 C 0.05 0.61 6.74 -84.23 -0.57 0.04 16 3 N -0.47 -6.00 10.53 -11.90 -0.13 -6.13 16 4 C 0.00 0.01 12.23 51.58 0.63 0.64 16 5 S 0.14 1.47 23.11 -107.50 -2.48 -1.02 16 6 C -0.19 -2.27 5.47 -35.92 -0.20 -2.47 16 7 C 0.16 1.86 2.75 -68.86 -0.19 1.67 16 8 H 0.10 1.18 6.43 -51.93 -0.33 0.84 16 9 C -0.18 -1.85 9.14 37.16 0.34 -1.51 16 10 N -0.68 -9.66 6.14 -107.95 -0.66 -10.32 16 11 C 0.06 0.99 5.48 -3.83 -0.02 0.97 16 12 C -0.11 -2.19 5.41 -26.73 -0.14 -2.33 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.64 7.03 -51.93 -0.37 0.27 16 25 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.07 0.72 7.45 -51.93 -0.39 0.34 16 29 H 0.34 4.54 8.47 -39.29 -0.33 4.20 16 30 H 0.07 1.17 8.06 -51.93 -0.42 0.76 16 31 H 0.03 0.46 7.43 -51.93 -0.39 0.07 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -31.37 314.62 -8.73 -40.10 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.57 Total: -1.25 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -0.35 Total: -16.56 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.05 Total: -42.75 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.48 Total: -1.02 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.37 -8.73 -40.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167253680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.657 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds