Wall clock time and date at job start Mon Mar 30 2020 07:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31776 * 122.74838 * 2 1 4 4 C 1.29027 * 117.12568 * 180.02562 * 3 2 1 5 5 S 1.70977 * 110.16578 * 359.97438 * 4 3 2 6 6 C 1.33635 * 122.74873 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.03862 * 0.03642 * 6 2 1 8 8 H 1.08994 * 109.47134 * 344.98577 * 7 6 2 9 9 C 1.53002 * 109.46980 * 104.98486 * 7 6 2 10 10 N 1.46906 * 109.47254 * 224.98026 * 7 6 2 11 11 C 1.46896 * 110.99870 * 155.00299 * 10 7 6 12 12 C 1.52995 * 109.46836 * 180.02562 * 11 10 7 13 13 C 1.53009 * 109.47026 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47006 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00008 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99872 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00291 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47507 * 90.00045 * 18 16 14 20 20 H 1.48500 * 109.47517 * 209.99994 * 18 16 14 21 21 H 1.48502 * 109.47141 * 330.00078 * 18 16 14 22 22 H 1.09001 * 109.47671 * 270.00063 * 1 2 3 23 23 H 1.09003 * 109.47133 * 30.00257 * 1 2 3 24 24 H 1.08999 * 109.47079 * 150.00052 * 1 2 3 25 25 H 1.07998 * 124.92077 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.46977 * 300.00102 * 9 7 6 27 27 H 1.08997 * 109.47575 * 59.99855 * 9 7 6 28 28 H 1.09001 * 109.47244 * 179.97438 * 9 7 6 29 29 H 1.00903 * 110.99748 * 278.95886 * 10 7 6 30 30 H 1.09002 * 109.46670 * 299.99972 * 11 10 7 31 31 H 1.08995 * 109.47298 * 60.00202 * 11 10 7 32 32 H 1.08998 * 109.47534 * 299.99408 * 12 11 10 33 33 H 1.09003 * 109.47614 * 60.00052 * 12 11 10 34 34 H 1.09002 * 109.46730 * 299.99657 * 13 12 11 35 35 H 1.08995 * 109.47048 * 59.99771 * 13 12 11 36 36 H 0.96996 * 120.00082 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 16 3.9332 -0.6731 -0.0004 6 6 2.2299 -1.1239 0.0005 7 6 1.6846 -2.5288 0.0004 8 1 0.6277 -2.5084 0.2660 9 6 1.8485 -3.1393 -1.3930 10 7 2.4202 -3.3398 0.9799 11 6 1.6046 -4.4685 1.4474 12 6 2.4023 -5.2874 2.4641 13 6 1.5526 -6.4628 2.9516 14 6 2.3386 -7.2697 3.9526 15 1 3.3437 -6.9742 4.2146 16 6 1.7745 -8.3854 4.5341 17 7 0.5502 -8.7450 4.2154 18 14 2.7489 -9.3861 5.7743 19 1 2.5038 -8.8565 7.1398 20 1 2.3208 -10.8066 5.7102 21 1 4.1969 -9.2908 5.4590 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 4.2059 1.8026 -0.0002 26 1 1.3028 -2.5377 -2.1198 27 1 2.9054 -3.1598 -1.6587 28 1 1.4546 -4.1557 -1.3930 29 1 3.2971 -3.6610 0.5977 30 1 0.6969 -4.0905 1.9178 31 1 1.3387 -5.1003 0.5999 32 1 3.3103 -5.6654 1.9942 33 1 2.6679 -4.6554 3.3116 34 1 0.6449 -6.0844 3.4218 35 1 1.2867 -7.0948 2.1044 36 1 0.1534 -9.5301 4.6241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167253680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:03 Heat of formation + Delta-G solvation = 1.288942 kcal Electronic energy + Delta-G solvation = -16059.733168 eV Core-core repulsion = 13475.949960 eV Total energy + Delta-G solvation = -2583.783208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86279 -38.43936 -35.90440 -34.11015 -32.48378 -30.64420 -28.21308 -27.67463 -25.74919 -24.49888 -22.78177 -22.01814 -19.83406 -18.82314 -18.47647 -17.04525 -16.56106 -16.40687 -16.02345 -15.47984 -15.20673 -14.50773 -14.41721 -14.33165 -13.90472 -13.66826 -13.41619 -13.31937 -13.24438 -12.92840 -12.68673 -12.47821 -12.36813 -12.24655 -11.95282 -11.54169 -11.38527 -11.13370 -10.57378 -10.54448 -10.13919 -9.65111 -9.38323 -8.19641 -6.30326 -0.17057 0.52076 0.90523 1.40698 1.41863 1.52990 1.84084 2.41551 3.12724 3.13717 3.41536 3.79668 4.01519 4.19357 4.28163 4.33430 4.36183 4.44757 4.69387 4.70839 4.76659 4.80839 4.85660 4.99930 5.02563 5.12609 5.15133 5.25409 5.36665 5.52987 5.76368 5.86985 5.98429 6.27588 6.38297 6.80830 6.86711 7.38901 8.92197 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.037424 B = 0.003625 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.001525 B = 7723.226602 C = 7985.518137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.038 3.962 3 N -0.497 5.497 4 C 0.007 3.993 5 S 0.154 5.846 6 C -0.208 4.208 7 C 0.158 3.842 8 H 0.098 0.902 9 C -0.173 4.173 10 N -0.686 5.686 11 C 0.075 3.925 12 C -0.093 4.093 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.058 0.942 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.227 0.773 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.344 0.656 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.049 0.951 34 H -0.009 1.009 35 H -0.006 1.006 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 17.258 -12.305 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 N -0.212 5.212 4 C -0.290 4.290 5 S 0.408 5.592 6 C -0.330 4.330 7 C 0.046 3.954 8 H 0.116 0.884 9 C -0.232 4.232 10 N -0.318 5.318 11 C -0.054 4.054 12 C -0.131 4.131 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.789 3.211 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.187 1.187 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.243 0.757 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.163 0.837 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.010 0.990 35 H 0.012 0.988 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.285 17.576 -11.738 21.786 hybrid contribution -0.640 -1.165 0.034 1.329 sum 4.645 16.411 -11.705 20.686 Atomic orbital electron populations 1.20406 0.86323 1.03835 1.03189 1.20495 0.99161 0.86235 1.03530 1.66212 1.06147 1.31992 1.16841 1.28814 0.95188 1.01313 1.03733 1.83895 1.06144 1.02661 1.66462 1.25808 0.96111 0.99850 1.11217 1.19897 0.98010 0.86167 0.91353 0.88439 1.22464 1.02942 1.01436 0.96360 1.60564 1.07116 1.23620 1.40456 1.21849 0.96226 0.90449 0.96854 1.21371 0.98168 0.95862 0.97658 1.18967 0.94669 0.92923 0.94667 1.21706 1.01001 1.10874 1.24551 0.92341 1.25970 0.96025 0.98816 0.99011 1.70093 1.15606 1.26769 1.44897 0.85462 0.79131 0.77571 0.78982 1.19874 1.20671 1.18735 0.90769 0.90329 0.89664 0.75696 0.90678 0.91808 0.91715 0.83681 0.91813 0.94887 0.93016 0.93189 0.99028 0.98811 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.81 71.24 0.70 -0.81 16 2 C 0.04 0.90 6.74 41.52 0.28 1.18 16 3 N -0.50 -12.07 10.53 -191.56 -2.02 -14.09 16 4 C 0.01 0.13 12.23 130.65 1.60 1.72 16 5 S 0.15 3.00 23.11 -56.49 -1.31 1.69 16 6 C -0.21 -4.77 5.47 24.64 0.13 -4.64 16 7 C 0.16 3.59 2.75 44.17 0.12 3.71 16 8 H 0.10 2.23 6.43 -2.39 -0.02 2.21 16 9 C -0.17 -3.28 9.14 71.98 0.66 -2.62 16 10 N -0.69 -18.62 6.14 -495.46 -3.04 -21.66 16 11 C 0.08 2.45 5.48 86.30 0.47 2.93 16 12 C -0.09 -3.78 5.41 30.60 0.17 -3.61 16 13 C 0.03 1.34 4.97 29.85 0.15 1.49 16 14 C -0.54 -31.18 9.11 25.60 0.23 -30.94 16 15 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 16 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 17 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 18 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 1.38 7.03 -2.39 -0.02 1.37 16 25 H 0.23 2.51 8.06 -2.91 -0.02 2.49 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.06 1.28 7.45 -2.39 -0.02 1.26 16 29 H 0.34 8.70 8.47 -89.69 -0.76 7.94 16 30 H 0.06 2.16 8.06 -2.39 -0.02 2.14 16 31 H 0.03 1.05 7.43 -2.39 -0.02 1.03 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -66.68 314.62 1.22 -65.46 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.30 Total: 9.97 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 4.97 Total: -31.17 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -4.77 Total: -92.40 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.31 Total: 1.69 kcal Total: -66.68 1.22 -65.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167253680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.746 kcal (2) G-P(sol) polarization free energy of solvation -66.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds