Wall clock time and date at job start Mon Mar 30 2020 07:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47511 * 2 1 4 4 N 1.29023 * 124.91672 * 89.99596 * 3 2 1 5 5 C 1.31789 * 117.12630 * 180.02562 * 4 3 2 6 6 C 1.50692 * 122.75100 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47230 * 145.02553 * 6 5 4 8 8 C 1.53004 * 109.46850 * 265.02237 * 6 5 4 9 9 N 1.46894 * 109.47400 * 25.01959 * 6 5 4 10 10 C 1.46898 * 111.00223 * 154.88400 * 9 6 5 11 11 H 1.08995 * 109.46974 * 34.21767 * 10 9 6 12 12 C 1.52998 * 109.47389 * 154.22667 * 10 9 6 13 13 C 1.50703 * 109.47132 * 274.22293 * 10 9 6 14 14 H 1.08000 * 120.00011 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00157 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00249 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00180 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47298 * 89.99621 * 17 15 13 19 19 H 1.48502 * 109.47173 * 210.00083 * 17 15 13 20 20 H 1.48503 * 109.46682 * 329.99995 * 17 15 13 21 21 C 1.33642 * 114.49910 * 0.23319 * 5 4 3 22 22 S 1.70979 * 124.91615 * 270.00334 * 3 2 1 23 23 H 1.09001 * 109.47204 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47361 * 300.00392 * 1 2 3 25 25 H 1.09004 * 109.46644 * 60.00062 * 1 2 3 26 26 H 1.09005 * 109.46947 * 240.00010 * 2 1 3 27 27 H 1.09000 * 109.47218 * 120.00384 * 2 1 3 28 28 H 1.09000 * 109.46996 * 295.44148 * 8 6 5 29 29 H 1.09000 * 109.47439 * 55.44942 * 8 6 5 30 30 H 1.09002 * 109.46979 * 175.44715 * 8 6 5 31 31 H 1.00906 * 110.99711 * 30.93236 * 9 6 5 32 32 H 1.08999 * 109.46898 * 185.70447 * 12 10 9 33 33 H 1.08999 * 109.46567 * 305.69625 * 12 10 9 34 34 H 1.08998 * 109.47277 * 65.69726 * 12 10 9 35 35 H 0.96996 * 120.00144 * 179.97438 * 16 15 13 36 36 H 1.07997 * 126.04221 * 179.76902 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2786 2.1170 1.0580 5 6 2.7134 3.3482 0.8793 6 6 3.0393 4.2719 2.0245 7 1 3.8866 4.9018 1.7534 8 6 1.8262 5.1527 2.3303 9 7 3.3797 3.4778 3.2125 10 6 4.2445 4.2387 4.1242 11 1 3.9726 5.2935 4.0873 12 6 4.0669 3.7157 5.5510 13 6 5.6829 4.0759 3.7051 14 1 5.9300 3.4677 2.8475 15 6 6.6835 4.7034 4.4164 16 7 6.3828 5.4436 5.4611 17 14 8.4664 4.5022 3.8965 18 1 8.8239 5.5714 2.9301 19 1 9.3443 4.6001 5.0902 20 1 8.6483 3.1749 3.2558 21 6 2.8365 3.7122 -0.4007 22 16 2.3586 2.3434 -1.4020 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6231 5.8003 1.4773 29 1 0.9583 4.5219 2.5224 30 1 2.0330 5.7635 3.2091 31 1 3.8100 2.6032 2.9517 32 1 4.6299 4.3441 6.2410 33 1 3.0103 3.7394 5.8176 34 1 4.4338 2.6910 5.6107 35 1 7.0868 5.8847 5.9617 36 1 3.1717 4.6746 -0.7582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171818379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:16 Heat of formation + Delta-G solvation = 30.939424 kcal Electronic energy + Delta-G solvation = -16747.379256 eV Core-core repulsion = 14164.881789 eV Total energy + Delta-G solvation = -2582.497467 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.81077 -36.19297 -34.11654 -32.68226 -30.63029 -28.72993 -27.07578 -25.40622 -24.98606 -23.22262 -20.84915 -19.80464 -19.38439 -17.26658 -16.49382 -15.46702 -14.76356 -14.67974 -14.49364 -14.22440 -13.76738 -13.17973 -12.95781 -12.50678 -12.18289 -11.98151 -11.74842 -11.67968 -11.46855 -11.20472 -11.15741 -10.91422 -10.77210 -10.63020 -10.21668 -9.94397 -9.80385 -9.32201 -9.19376 -9.02889 -8.46629 -8.37489 -7.18526 -5.97256 -4.09218 0.91888 1.54787 1.90809 3.10000 3.27636 3.34885 3.38429 4.18431 4.41622 4.90526 5.09265 5.14312 5.23413 5.31772 5.41391 5.55554 5.68907 5.80172 5.90530 5.94271 6.06072 6.07672 6.26293 6.51201 6.58418 6.82490 6.96956 7.22104 7.37160 7.56577 7.78364 8.04364 8.13433 8.23158 8.39643 8.74490 9.05255 9.58470 11.03888 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025413 B = 0.005536 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.522403 B = 5056.874247 C = 5318.128009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.050 3.950 4 N -0.443 5.443 5 C 0.088 3.912 6 C 0.159 3.841 7 H 0.063 0.937 8 C -0.129 4.129 9 N -0.674 5.674 10 C 0.205 3.795 11 H 0.033 0.967 12 C -0.121 4.121 13 C -0.544 4.544 14 H 0.051 0.949 15 C 0.068 3.932 16 N -0.886 5.886 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.285 1.285 20 H -0.276 1.276 21 C -0.260 4.260 22 S 0.078 5.922 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.336 0.664 32 H 0.077 0.923 33 H 0.014 0.986 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 -6.437 -12.666 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.229 4.229 4 N -0.156 5.156 5 C -0.044 4.044 6 C 0.046 3.954 7 H 0.081 0.919 8 C -0.187 4.187 9 N -0.305 5.305 10 C 0.097 3.903 11 H 0.051 0.949 12 C -0.179 4.179 13 C -0.583 4.583 14 H 0.069 0.931 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.399 4.399 22 S 0.332 5.668 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.154 0.846 32 H 0.095 0.905 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.469 -6.579 -12.738 17.752 hybrid contribution 2.276 0.588 -0.129 2.355 sum -8.193 -5.991 -12.867 16.388 Atomic orbital electron populations 1.21753 0.93714 1.02235 1.02661 1.20182 0.96557 0.87828 1.04066 1.27115 1.03444 1.01728 0.90595 1.66067 1.13281 1.05691 1.30596 1.20694 0.98129 0.91184 0.94391 1.20027 0.97068 0.91675 0.86650 0.91936 1.21749 0.97595 0.98513 1.00869 1.60912 1.49434 1.06732 1.13430 1.19218 0.88775 0.92982 0.89282 0.94908 1.21639 0.97088 0.99800 0.99389 1.21860 0.92723 1.30531 1.13205 0.93076 1.24918 0.98768 0.94925 0.94824 1.69897 1.32633 1.31647 1.18256 0.86673 0.85249 0.78419 0.78116 1.20774 1.21116 1.20067 1.26742 1.13531 1.03978 0.95654 1.83699 1.62286 1.06760 1.14042 0.91646 0.91761 0.92637 0.90046 0.88674 0.93717 0.92688 0.91661 0.84617 0.90461 0.96694 0.95642 0.92943 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.90 37.16 0.37 -0.96 16 2 C -0.05 -0.48 6.52 -27.88 -0.18 -0.66 16 3 C 0.05 0.71 6.64 -13.46 -0.09 0.62 16 4 N -0.44 -7.76 9.76 -8.06 -0.08 -7.84 16 5 C 0.09 1.56 5.59 -84.23 -0.47 1.09 16 6 C 0.16 3.15 2.76 -68.87 -0.19 2.96 16 7 H 0.06 1.34 7.66 -51.93 -0.40 0.94 16 8 C -0.13 -2.28 9.40 37.16 0.35 -1.93 16 9 N -0.67 -15.21 5.88 -102.18 -0.60 -15.81 16 10 C 0.21 5.27 2.38 -68.87 -0.16 5.10 16 11 H 0.03 0.91 7.11 -51.93 -0.37 0.54 16 12 C -0.12 -3.06 9.21 37.16 0.34 -2.72 16 13 C -0.54 -15.05 8.30 -34.44 -0.29 -15.34 16 14 H 0.05 1.43 7.73 -52.49 -0.41 1.02 16 15 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 16 N -0.89 -25.40 11.38 55.43 0.63 -24.77 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.26 -3.92 11.14 29.12 0.32 -3.59 16 22 S 0.08 0.98 23.18 -107.50 -2.49 -1.51 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.21 7.40 -51.93 -0.38 0.83 16 31 H 0.34 7.89 7.62 -39.29 -0.30 7.59 16 32 H 0.08 2.10 6.24 -51.93 -0.32 1.78 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -29.48 311.60 -8.50 -37.98 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.54 Total: 4.39 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.09 Total: -13.61 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.05 Total: -48.42 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.48 -8.50 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171818379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.918 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds