Wall clock time and date at job start Mon Mar 30 2020 07:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47059 * 2 1 4 4 N 1.29024 * 124.91848 * 90.00601 * 3 2 1 5 5 C 1.31777 * 117.13032 * 180.02562 * 4 3 2 6 6 C 1.50701 * 122.75299 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46998 * 214.99618 * 6 5 4 8 8 C 1.53001 * 109.47153 * 94.99572 * 6 5 4 9 9 N 1.46890 * 109.46941 * 334.99529 * 6 5 4 10 10 C 1.46902 * 110.99944 * 204.99974 * 9 6 5 11 11 H 1.08995 * 109.47134 * 325.00031 * 10 9 6 12 12 C 1.53006 * 109.47244 * 84.99958 * 10 9 6 13 13 C 1.50699 * 109.47480 * 204.99959 * 10 9 6 14 14 H 1.08005 * 119.99634 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00602 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99304 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 120.00497 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47202 * 59.99699 * 17 15 13 19 19 H 1.48499 * 109.47375 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46955 * 299.99946 * 17 15 13 21 21 C 1.33647 * 114.49749 * 359.97438 * 5 4 3 22 22 S 1.70986 * 124.91681 * 270.31075 * 3 2 1 23 23 H 1.08997 * 109.47131 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46665 * 300.00176 * 1 2 3 25 25 H 1.09006 * 109.47050 * 60.00210 * 1 2 3 26 26 H 1.09002 * 109.47283 * 240.00184 * 2 1 3 27 27 H 1.09000 * 109.47103 * 120.00206 * 2 1 3 28 28 H 1.08994 * 109.47094 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47206 * 299.99918 * 8 6 5 30 30 H 1.09003 * 109.47029 * 60.00123 * 8 6 5 31 31 H 1.00903 * 111.00447 * 81.04847 * 9 6 5 32 32 H 1.09003 * 109.46679 * 60.00069 * 12 10 9 33 33 H 1.09000 * 109.47303 * 180.02562 * 12 10 9 34 34 H 1.08998 * 109.47138 * 300.00328 * 12 10 9 35 35 H 0.97003 * 119.99753 * 179.97438 * 16 15 13 36 36 H 1.08002 * 126.03488 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1171 1.0580 5 6 2.7133 3.3482 0.8794 6 6 3.0393 4.2719 2.0246 7 1 2.7752 5.2941 1.7535 8 6 4.5365 4.1961 2.3307 9 7 2.2757 3.8675 3.2124 10 6 2.0823 5.0020 4.1254 11 1 2.9630 5.6436 4.0992 12 6 0.8542 5.8038 3.6896 13 6 1.8758 4.4893 5.5273 14 1 1.8876 3.4267 5.7209 15 6 1.6720 5.3763 6.5629 16 7 1.6583 6.6701 6.3273 17 14 1.4168 4.7407 8.3008 18 1 2.6094 3.9635 8.7237 19 1 1.2200 5.8875 9.2235 20 1 0.2175 3.8658 8.3367 21 6 2.8413 3.7105 -0.4007 22 16 2.3514 2.3461 -1.4020 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 4.7722 4.8638 3.1593 29 1 4.8007 3.1739 2.6018 30 1 5.1032 4.4962 1.4492 31 1 2.7227 3.0958 3.6844 32 1 -0.0266 5.1622 3.7158 33 1 0.7110 6.6459 4.3668 34 1 1.0035 6.1747 2.6756 35 1 1.5145 7.2943 7.0558 36 1 3.1803 4.6716 -0.7581 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171818381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:19 Heat of formation + Delta-G solvation = 31.801727 kcal Electronic energy + Delta-G solvation = -16690.329696 eV Core-core repulsion = 14107.869622 eV Total energy + Delta-G solvation = -2582.460074 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74606 -36.35033 -34.08150 -32.77995 -30.52404 -28.77081 -26.82602 -25.40581 -25.10855 -23.37329 -21.06487 -19.65893 -19.40776 -17.29029 -16.37054 -15.34733 -14.91710 -14.64281 -14.40067 -13.94103 -13.68942 -13.38047 -13.01577 -12.57459 -12.40629 -12.10863 -11.87683 -11.69263 -11.41215 -11.15898 -11.14027 -10.91470 -10.67822 -10.58592 -10.32617 -10.08451 -9.84972 -9.27153 -9.14967 -8.80353 -8.45873 -8.41122 -7.15024 -5.99044 -4.04575 0.95543 1.58470 1.94113 3.16269 3.34026 3.38000 3.41537 4.24201 4.43702 4.95635 5.15139 5.19879 5.22209 5.33045 5.43874 5.57361 5.68399 5.73646 5.77135 5.82407 5.94922 6.14389 6.19042 6.34527 6.42786 6.65077 6.91994 7.18977 7.27401 7.54592 7.82504 7.94189 8.14055 8.32036 8.49026 8.74874 9.07155 9.61041 11.07402 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.028420 B = 0.005170 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.975225 B = 5414.110593 C = 5909.549535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.050 3.950 4 N -0.436 5.436 5 C 0.106 3.894 6 C 0.153 3.847 7 H 0.087 0.913 8 C -0.171 4.171 9 N -0.669 5.669 10 C 0.211 3.789 11 H 0.002 0.998 12 C -0.124 4.124 13 C -0.515 4.515 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.269 4.269 22 S 0.071 5.929 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.338 0.662 32 H 0.030 0.970 33 H 0.080 0.920 34 H 0.002 0.998 35 H 0.261 0.739 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 -8.907 -14.862 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.229 4.229 4 N -0.149 5.149 5 C -0.027 4.027 6 C 0.038 3.962 7 H 0.105 0.895 8 C -0.231 4.231 9 N -0.300 5.300 10 C 0.104 3.896 11 H 0.020 0.980 12 C -0.182 4.182 13 C -0.553 4.553 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.724 3.276 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.407 4.407 22 S 0.325 5.675 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.291 -9.059 -15.613 18.096 hybrid contribution 0.922 0.543 1.925 2.203 sum 2.213 -8.515 -13.687 16.271 Atomic orbital electron populations 1.21764 0.93623 1.02198 1.02937 1.20167 0.96698 0.87842 1.03781 1.27140 1.03617 1.01633 0.90519 1.66052 1.12690 1.05826 1.30360 1.20557 0.97142 0.91066 0.93885 1.20066 0.91450 0.95035 0.89599 0.89517 1.22461 0.96683 1.02270 1.01677 1.60607 1.50347 1.10881 1.08163 1.19128 0.93652 0.87319 0.89502 0.98024 1.21731 0.98822 1.00961 0.96722 1.21219 1.49338 0.93161 0.91629 0.92273 1.24904 0.95206 0.94829 0.99042 1.69890 1.50020 1.01098 1.32032 0.86588 0.78734 0.78199 0.84031 1.20358 1.21359 1.20234 1.26671 1.14337 1.04072 0.95657 1.83673 1.62366 1.07186 1.14229 0.91714 0.91470 0.92639 0.90188 0.88854 0.91357 0.92649 0.93170 0.84373 0.95042 0.90126 0.97939 0.92950 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.90 37.16 0.37 -1.12 16 2 C -0.04 -0.47 6.52 -27.88 -0.18 -0.65 16 3 C 0.05 0.71 6.64 -13.46 -0.09 0.62 16 4 N -0.44 -7.66 10.14 -8.05 -0.08 -7.74 16 5 C 0.11 1.83 5.80 -84.22 -0.49 1.34 16 6 C 0.15 2.88 2.74 -68.87 -0.19 2.69 16 7 H 0.09 1.67 7.11 -51.93 -0.37 1.30 16 8 C -0.17 -2.88 9.13 37.16 0.34 -2.54 16 9 N -0.67 -14.95 5.74 -102.17 -0.59 -15.54 16 10 C 0.21 5.42 2.41 -68.86 -0.17 5.25 16 11 H 0.00 0.06 7.11 -51.93 -0.37 -0.31 16 12 C -0.12 -3.17 9.17 37.16 0.34 -2.83 16 13 C -0.51 -14.34 8.59 -34.44 -0.30 -14.64 16 14 H 0.06 1.64 7.62 -52.48 -0.40 1.24 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 17 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.27 -3.90 11.14 29.12 0.32 -3.58 16 22 S 0.07 0.89 23.18 -107.50 -2.49 -1.60 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.23 7.43 -51.93 -0.39 0.84 16 29 H 0.05 0.93 8.13 -51.93 -0.42 0.50 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.34 7.65 7.96 -39.29 -0.31 7.34 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 34 H 0.00 0.04 7.43 -51.93 -0.39 -0.35 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -29.81 310.80 -8.48 -38.29 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.48 Total: 4.19 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -0.13 Total: -13.82 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.04 Total: -48.30 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.49 Total: -1.60 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.81 -8.48 -38.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171818381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.096 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds