Wall clock time and date at job start Mon Mar 30 2020 07:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47059 * 2 1 4 4 N 1.29024 * 124.91848 * 90.00601 * 3 2 1 5 5 C 1.31777 * 117.13032 * 180.02562 * 4 3 2 6 6 C 1.50701 * 122.75299 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46998 * 214.99618 * 6 5 4 8 8 C 1.53001 * 109.47153 * 94.99572 * 6 5 4 9 9 N 1.46890 * 109.46941 * 334.99529 * 6 5 4 10 10 C 1.46902 * 110.99944 * 204.99974 * 9 6 5 11 11 H 1.08995 * 109.47134 * 325.00031 * 10 9 6 12 12 C 1.53006 * 109.47244 * 84.99958 * 10 9 6 13 13 C 1.50699 * 109.47480 * 204.99959 * 10 9 6 14 14 H 1.08005 * 119.99634 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00602 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99304 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 120.00497 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47202 * 59.99699 * 17 15 13 19 19 H 1.48499 * 109.47375 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46955 * 299.99946 * 17 15 13 21 21 C 1.33647 * 114.49749 * 359.97438 * 5 4 3 22 22 S 1.70986 * 124.91681 * 270.31075 * 3 2 1 23 23 H 1.08997 * 109.47131 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46665 * 300.00176 * 1 2 3 25 25 H 1.09006 * 109.47050 * 60.00210 * 1 2 3 26 26 H 1.09002 * 109.47283 * 240.00184 * 2 1 3 27 27 H 1.09000 * 109.47103 * 120.00206 * 2 1 3 28 28 H 1.08994 * 109.47094 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47206 * 299.99918 * 8 6 5 30 30 H 1.09003 * 109.47029 * 60.00123 * 8 6 5 31 31 H 1.00903 * 111.00447 * 81.04847 * 9 6 5 32 32 H 1.09003 * 109.46679 * 60.00069 * 12 10 9 33 33 H 1.09000 * 109.47303 * 180.02562 * 12 10 9 34 34 H 1.08998 * 109.47138 * 300.00328 * 12 10 9 35 35 H 0.97003 * 119.99753 * 179.97438 * 16 15 13 36 36 H 1.08002 * 126.03488 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1171 1.0580 5 6 2.7133 3.3482 0.8794 6 6 3.0393 4.2719 2.0246 7 1 2.7752 5.2941 1.7535 8 6 4.5365 4.1961 2.3307 9 7 2.2757 3.8675 3.2124 10 6 2.0823 5.0020 4.1254 11 1 2.9630 5.6436 4.0992 12 6 0.8542 5.8038 3.6896 13 6 1.8758 4.4893 5.5273 14 1 1.8876 3.4267 5.7209 15 6 1.6720 5.3763 6.5629 16 7 1.6583 6.6701 6.3273 17 14 1.4168 4.7407 8.3008 18 1 2.6094 3.9635 8.7237 19 1 1.2200 5.8875 9.2235 20 1 0.2175 3.8658 8.3367 21 6 2.8413 3.7105 -0.4007 22 16 2.3514 2.3461 -1.4020 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 4.7722 4.8638 3.1593 29 1 4.8007 3.1739 2.6018 30 1 5.1032 4.4962 1.4492 31 1 2.7227 3.0958 3.6844 32 1 -0.0266 5.1622 3.7158 33 1 0.7110 6.6459 4.3668 34 1 1.0035 6.1747 2.6756 35 1 1.5145 7.2943 7.0558 36 1 3.1803 4.6716 -0.7581 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171818381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:19 Heat of formation + Delta-G solvation = 12.722407 kcal Electronic energy + Delta-G solvation = -16691.157037 eV Core-core repulsion = 14107.869622 eV Total energy + Delta-G solvation = -2583.287416 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94730 -38.03040 -35.43896 -34.36585 -32.23525 -30.09390 -28.51926 -27.29052 -26.41571 -24.64696 -22.32504 -21.53591 -20.56276 -18.83247 -18.01894 -17.01154 -16.32730 -16.04515 -15.64962 -15.38260 -15.10568 -14.75500 -14.32989 -14.18392 -13.83012 -13.46773 -13.35816 -12.97789 -12.84188 -12.68509 -12.53924 -12.50662 -12.25289 -12.19932 -12.16891 -11.94377 -11.65371 -10.91484 -10.56717 -10.37267 -10.23839 -9.54483 -8.94473 -8.12753 -6.25964 -0.13949 0.54585 0.83554 1.41649 1.43818 1.51428 1.96129 2.42010 3.15337 3.21741 3.66121 3.93888 4.16155 4.26985 4.30502 4.38328 4.38759 4.58868 4.72922 4.80324 4.83223 4.89140 5.00897 5.05411 5.11408 5.14106 5.22267 5.31586 5.40514 5.48552 5.68181 5.86384 6.22357 6.51098 6.76930 7.00621 7.07701 7.44027 8.92863 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.028420 B = 0.005170 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.975225 B = 5414.110593 C = 5909.549535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 C 0.036 3.964 4 N -0.481 5.481 5 C 0.078 3.922 6 C 0.152 3.848 7 H 0.078 0.922 8 C -0.160 4.160 9 N -0.671 5.671 10 C 0.218 3.782 11 H -0.022 1.022 12 C -0.111 4.111 13 C -0.536 4.536 14 H 0.054 0.946 15 C 0.015 3.985 16 N -0.917 5.917 17 Si 0.961 3.039 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.274 1.274 21 C -0.273 4.273 22 S 0.145 5.855 23 H 0.089 0.911 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.333 0.667 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.019 0.981 35 H 0.263 0.737 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 -10.159 -16.415 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.243 4.243 4 N -0.195 5.195 5 C -0.055 4.055 6 C 0.039 3.961 7 H 0.096 0.904 8 C -0.219 4.219 9 N -0.301 5.301 10 C 0.110 3.890 11 H -0.005 1.005 12 C -0.170 4.170 13 C -0.575 4.575 14 H 0.072 0.928 15 C -0.184 4.184 16 N -0.556 5.556 17 Si 0.787 3.213 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.200 1.200 21 C -0.412 4.412 22 S 0.400 5.600 23 H 0.107 0.893 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.151 0.849 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.397 -10.324 -17.195 20.105 hybrid contribution 0.891 0.905 2.260 2.593 sum 2.288 -9.419 -14.935 17.804 Atomic orbital electron populations 1.21740 0.93230 1.03457 1.01692 1.20358 0.96917 0.86208 1.05125 1.27712 1.02731 1.02863 0.90949 1.66012 1.14515 1.06402 1.32568 1.20270 0.99695 0.91393 0.94110 1.20048 0.92111 0.95190 0.88795 0.90436 1.22318 0.95858 1.01652 1.02109 1.60515 1.51764 1.09483 1.08315 1.18905 0.92502 0.87923 0.89676 1.00456 1.21549 0.98353 0.99898 0.97157 1.21515 1.49781 0.93056 0.93110 0.92822 1.25688 0.94771 0.95014 1.02920 1.70008 1.50346 1.02054 1.33175 0.85567 0.78746 0.77763 0.79263 1.19610 1.20688 1.19952 1.26993 1.12972 1.05822 0.95455 1.83371 1.60370 1.04620 1.11603 0.89253 0.94470 0.92032 0.86999 0.89342 0.93293 0.92871 0.90379 0.84927 0.96080 0.92225 0.96208 0.92816 0.79088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.90 71.98 0.71 -1.93 16 2 C -0.05 -0.88 6.52 29.85 0.19 -0.68 16 3 C 0.04 0.96 6.64 88.52 0.59 1.54 16 4 N -0.48 -16.67 10.14 -179.40 -1.82 -18.49 16 5 C 0.08 2.64 5.80 41.52 0.24 2.88 16 6 C 0.15 5.79 2.74 44.17 0.12 5.91 16 7 H 0.08 3.03 7.11 -2.39 -0.02 3.01 16 8 C -0.16 -5.40 9.13 71.98 0.66 -4.74 16 9 N -0.67 -30.80 5.74 -477.17 -2.74 -33.54 16 10 C 0.22 11.54 2.41 44.17 0.11 11.65 16 11 H -0.02 -1.25 7.11 -2.39 -0.02 -1.27 16 12 C -0.11 -5.82 9.17 71.98 0.66 -5.16 16 13 C -0.54 -30.55 8.59 25.60 0.22 -30.33 16 14 H 0.05 3.04 7.62 -2.91 -0.02 3.02 16 15 C 0.02 0.86 5.30 84.65 0.45 1.31 16 16 N -0.92 -53.56 11.32 21.45 0.24 -53.31 16 17 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 21 C -0.27 -7.39 11.14 66.78 0.74 -6.65 16 22 S 0.15 3.18 23.18 -56.49 -1.31 1.87 16 23 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.81 7.43 -2.39 -0.02 1.79 16 29 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.33 15.61 7.96 -89.69 -0.71 14.90 16 32 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 34 H 0.02 0.91 7.43 -2.39 -0.02 0.89 16 35 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -64.87 310.80 1.45 -63.42 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.35 Total: 19.68 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 4.69 Total: -26.20 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.31 Total: -105.34 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.31 Total: 1.87 kcal Total: -64.87 1.45 -63.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171818381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.146 kcal (2) G-P(sol) polarization free energy of solvation -64.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds