Wall clock time and date at job start Mon Mar 30 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46866 * 2 1 4 4 N 1.46500 * 109.46874 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00116 * 272.36329 * 4 3 2 6 6 H 1.07998 * 120.00048 * 177.29985 * 5 4 3 7 7 C 1.38810 * 119.99938 * 357.30563 * 5 4 3 8 8 N 1.31616 * 120.00117 * 29.29230 * 7 5 4 9 9 Si 1.86801 * 119.99795 * 209.29798 * 7 5 4 10 10 H 1.48500 * 109.47463 * 84.99180 * 9 7 5 11 11 H 1.48505 * 109.47248 * 204.98852 * 9 7 5 12 12 H 1.48503 * 109.47243 * 324.98701 * 9 7 5 13 13 C 1.46505 * 119.99981 * 92.36139 * 4 3 2 14 14 C 1.50701 * 109.47437 * 270.00357 * 13 4 3 15 15 C 1.38714 * 120.77858 * 269.97998 * 14 13 4 16 16 C 1.38140 * 119.19523 * 180.02562 * 15 14 13 17 17 N 1.31913 * 120.77986 * 0.02562 * 16 15 14 18 18 C 1.31950 * 121.70674 * 359.67902 * 17 16 15 19 19 Cl 1.73595 * 119.63424 * 180.29243 * 18 17 16 20 20 C 1.38397 * 120.72829 * 0.58499 * 18 17 16 21 21 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46974 * 300.00250 * 1 2 3 23 23 H 1.08996 * 109.46992 * 59.99861 * 1 2 3 24 24 H 1.08997 * 109.47274 * 239.99934 * 2 1 3 25 25 H 1.08998 * 109.47106 * 119.99613 * 2 1 3 26 26 H 1.08997 * 109.47228 * 59.99906 * 3 2 1 27 27 H 1.08998 * 109.46942 * 299.99713 * 3 2 1 28 28 H 0.96999 * 120.00028 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47135 * 149.99862 * 13 4 3 30 30 H 1.09005 * 109.47012 * 30.00159 * 13 4 3 31 31 H 1.08006 * 120.40234 * 359.97438 * 15 14 13 32 32 H 1.08002 * 119.61229 * 179.97438 * 16 15 14 33 33 H 1.07995 * 120.42203 * 179.72993 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3938 1.1858 6 1 5.2683 1.3498 1.1849 7 6 3.4958 1.4009 2.3883 8 7 2.2841 0.8910 2.4523 9 14 4.2823 2.1345 3.9156 10 1 4.0499 3.6010 3.9364 11 1 3.6798 1.5206 5.1262 12 1 5.7426 1.8649 3.8985 13 6 4.2380 1.4947 -1.2668 14 6 4.4894 0.0929 -1.7598 15 6 5.6398 -0.5917 -1.3965 16 6 5.8373 -1.8751 -1.8678 17 7 4.9479 -2.4497 -2.6545 18 6 3.8397 -1.8314 -3.0160 19 17 2.7023 -2.6414 -4.0474 20 6 3.5771 -0.5421 -2.5870 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.7997 0.8956 3.2926 29 1 5.1903 2.0027 -1.1151 30 1 3.6492 2.0393 -2.0049 31 1 6.3726 -0.1266 -0.7537 32 1 6.7308 -2.4142 -1.5895 33 1 2.6706 -0.0391 -2.8895 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195410562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:58 Heat of formation + Delta-G solvation = 48.776851 kcal Electronic energy + Delta-G solvation = -16957.834578 eV Core-core repulsion = 14238.233800 eV Total energy + Delta-G solvation = -2719.600779 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.80280 -36.58375 -36.19803 -33.13072 -31.95159 -30.67264 -30.50403 -26.34735 -25.60394 -23.11529 -22.63130 -20.95674 -20.00089 -16.97195 -16.46801 -16.07071 -15.43571 -15.09429 -14.09811 -13.89194 -13.67746 -13.44066 -13.10063 -12.92832 -12.10744 -11.78075 -11.55958 -11.41425 -11.21488 -11.04955 -10.95294 -10.74149 -10.44818 -10.17742 -10.02774 -9.93014 -9.41606 -9.27341 -9.00218 -8.56272 -8.30100 -7.10913 -5.91671 -3.15335 1.37944 1.62589 2.13798 3.33127 3.41559 3.42711 4.05225 4.42906 4.82704 5.12009 5.29306 5.37451 5.44873 5.54293 5.65329 5.92883 6.12714 6.20868 6.21929 6.31684 6.43201 6.54768 6.60580 6.84433 6.91603 6.96374 7.16562 7.24328 7.58879 7.74005 8.06538 8.09300 8.20383 9.09617 9.70890 10.14321 11.10409 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.007201 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.238489 B = 3887.217309 C = 4553.084103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.166 3.834 4 N -0.584 5.584 5 C -0.259 4.259 6 H 0.078 0.922 7 C 0.006 3.994 8 N -0.881 5.881 9 Si 0.894 3.106 10 H -0.287 1.287 11 H -0.293 1.293 12 H -0.281 1.281 13 C 0.180 3.820 14 C -0.030 4.030 15 C -0.156 4.156 16 C 0.108 3.892 17 N -0.498 5.498 18 C 0.169 3.831 19 Cl -0.054 7.054 20 C -0.144 4.144 21 H 0.032 0.968 22 H 0.051 0.949 23 H 0.030 0.970 24 H 0.023 0.977 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.006 0.994 28 H 0.254 0.746 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.136 0.864 32 H 0.156 0.844 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -1.290 -8.528 8.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.042 3.958 4 N -0.302 5.302 5 C -0.387 4.387 6 H 0.096 0.904 7 C -0.192 4.192 8 N -0.525 5.525 9 Si 0.723 3.277 10 H -0.214 1.214 11 H -0.220 1.220 12 H -0.207 1.207 13 C 0.052 3.948 14 C -0.042 4.042 15 C -0.177 4.177 16 C -0.048 4.048 17 N -0.210 5.210 18 C 0.006 3.994 19 Cl -0.025 7.025 20 C -0.166 4.166 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.173 0.827 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.850 -2.167 -8.727 9.180 hybrid contribution 0.016 0.673 1.137 1.321 sum 1.865 -1.494 -7.590 7.957 Atomic orbital electron populations 1.21618 0.98588 0.99281 0.99969 1.22167 0.92890 1.00352 1.01422 1.21178 0.81262 0.94801 0.98579 1.44581 1.02068 1.83562 1.00034 1.19257 0.91008 1.45362 0.83111 0.90405 1.24742 0.96601 1.00408 0.97484 1.70250 1.13448 1.43391 1.25411 0.86427 0.78737 0.79859 0.82648 1.21434 1.21987 1.20695 1.19976 0.97427 0.88721 0.88666 1.21819 0.91169 1.01456 0.89797 1.22060 0.98892 0.95891 1.00836 1.22485 0.96761 0.92632 0.92937 1.66858 1.02354 1.37662 1.14169 1.21502 0.91586 0.90347 0.95997 1.98361 1.57586 1.80865 1.65723 1.21617 1.01227 0.93778 0.99933 0.94901 0.92990 0.95099 0.95873 0.88630 0.89003 0.97527 0.93559 0.91694 0.92594 0.84613 0.82700 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.91 37.16 0.37 -2.25 16 2 C -0.13 -2.84 5.71 -26.73 -0.15 -3.00 16 3 C 0.17 3.73 4.99 -4.04 -0.02 3.71 16 4 N -0.58 -13.17 2.52 -174.61 -0.44 -13.61 16 5 C -0.26 -6.44 9.69 -15.06 -0.15 -6.59 16 6 H 0.08 1.89 7.98 -52.49 -0.42 1.47 16 7 C 0.01 0.16 4.98 -17.43 -0.09 0.07 16 8 N -0.88 -23.15 8.35 55.49 0.46 -22.69 16 9 Si 0.89 20.45 29.64 -169.99 -5.04 15.41 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.18 3.31 5.88 -5.19 -0.03 3.28 16 14 C -0.03 -0.53 5.44 -104.33 -0.57 -1.10 16 15 C -0.16 -2.59 9.82 -39.44 -0.39 -2.98 16 16 C 0.11 1.72 11.18 -17.55 -0.20 1.53 16 17 N -0.50 -8.85 10.34 -10.36 -0.11 -8.95 16 18 C 0.17 2.96 7.27 -17.44 -0.13 2.84 16 19 Cl -0.05 -0.83 29.11 -51.86 -1.51 -2.34 16 20 C -0.14 -2.49 7.57 -39.40 -0.30 -2.79 16 21 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.02 0.49 5.65 -51.93 -0.29 0.20 16 25 H 0.10 2.48 6.30 -51.93 -0.33 2.16 16 26 H 0.09 2.32 5.81 -51.93 -0.30 2.01 16 27 H 0.01 0.13 7.87 -51.93 -0.41 -0.28 16 28 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.06 1.12 8.00 -51.93 -0.42 0.71 16 30 H 0.06 0.93 7.84 -51.93 -0.41 0.53 16 31 H 0.14 2.08 8.06 -52.48 -0.42 1.65 16 32 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.14 2.21 7.87 -52.49 -0.41 1.79 16 LS Contribution 289.88 15.07 4.37 4.37 Total: -1.00 -26.73 289.88 -8.14 -34.88 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.23 Total: 0.22 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.64 Total: -7.27 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.08 Total: -45.26 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.04 Total: 15.41 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.51 Total: -2.34 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.73 -8.14 -34.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195410562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.652 kcal (2) G-P(sol) polarization free energy of solvation -26.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds