Wall clock time and date at job start Mon Mar 30 2020 07:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35318 * 126.12570 * 2 1 4 4 C 1.50698 * 126.03860 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47434 * 204.99835 * 4 3 2 6 6 Si 1.63099 * 114.00081 * 149.99878 * 5 4 3 7 7 C 1.86305 * 109.47024 * 60.00839 * 6 5 4 8 8 C 1.86304 * 109.47440 * 180.02562 * 6 5 4 9 9 C 1.86301 * 109.47524 * 300.00513 * 6 5 4 10 10 C 1.50708 * 109.46954 * 85.00334 * 4 3 2 11 11 N 1.27947 * 119.99709 * 235.00048 * 10 4 3 12 12 Si 1.86800 * 119.99941 * 55.00156 * 10 4 3 13 13 H 1.48503 * 109.46819 * 239.99875 * 12 10 4 14 14 H 1.48494 * 109.47291 * 359.97438 * 12 10 4 15 15 H 1.48492 * 109.47256 * 120.00028 * 12 10 4 16 16 C 1.39863 * 107.92022 * 180.28262 * 3 2 1 17 17 N 1.30829 * 108.20358 * 359.55362 * 16 3 2 18 18 N 1.34947 * 126.13111 * 180.02562 * 2 1 3 19 19 C 1.46505 * 126.03492 * 359.95655 * 18 2 1 20 20 H 1.09001 * 109.46825 * 90.00494 * 1 2 3 21 21 H 1.08999 * 109.46628 * 210.00044 * 1 2 3 22 22 H 1.08994 * 109.47093 * 330.00505 * 1 2 3 23 23 H 1.08999 * 109.47643 * 325.00376 * 4 3 2 24 24 H 1.08992 * 109.47309 * 59.99683 * 7 6 5 25 25 H 1.08997 * 109.47206 * 180.02562 * 7 6 5 26 26 H 1.09002 * 109.46773 * 299.99332 * 7 6 5 27 27 H 1.09008 * 109.47001 * 59.99792 * 8 6 5 28 28 H 1.08990 * 109.47557 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.46887 * 300.00542 * 8 6 5 30 30 H 1.08999 * 109.46906 * 59.99784 * 9 6 5 31 31 H 1.08997 * 109.47485 * 179.97438 * 9 6 5 32 32 H 1.08998 * 109.46809 * 300.00219 * 9 6 5 33 33 H 0.97001 * 119.99976 * 359.97438 * 11 10 4 34 34 H 1.08009 * 125.90015 * 179.73427 * 16 3 2 35 35 H 1.09003 * 109.46658 * 89.99978 * 19 18 2 36 36 H 1.08992 * 109.46979 * 209.99919 * 19 18 2 37 37 H 1.08999 * 109.47279 * 330.00392 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8432 2.5276 0.0005 5 8 2.8595 3.3552 -0.5689 6 14 2.2876 4.6818 -1.3261 7 6 1.3413 5.7306 -0.1115 8 6 3.7113 5.6640 -2.0183 9 6 1.1570 4.1658 -2.7140 10 6 1.5721 2.9675 1.4163 11 7 0.4301 3.4534 1.7275 12 14 2.9032 2.8033 2.7165 13 1 2.4224 1.9187 3.8081 14 1 4.1226 2.2163 2.1052 15 1 3.2226 4.1437 3.2700 16 6 3.6334 0.6560 -0.0066 17 7 3.6334 -0.6522 -0.0007 18 7 2.3027 -1.0899 -0.0005 19 6 1.8540 -2.4846 -0.0002 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 0.9304 2.6158 -0.5885 24 1 2.0028 6.0325 0.7005 25 1 0.9588 6.6169 -0.6176 26 1 0.5082 5.1558 0.2931 27 1 4.2647 5.0502 -2.7290 28 1 3.3292 6.5508 -2.5239 29 1 4.3731 5.9659 -1.2065 30 1 0.3240 3.5910 -2.3094 31 1 0.7745 5.0524 -3.2197 32 1 1.7107 3.5522 -3.4246 33 1 -0.2609 3.5389 1.0522 34 1 4.5084 1.2893 -0.0123 35 1 1.7422 -2.8304 -1.0279 36 1 2.5903 -3.1030 0.5131 37 1 0.8958 -2.5579 0.5141 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211400161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:23 Heat of formation + Delta-G solvation = 16.841137 kcal Electronic energy + Delta-G solvation = -17915.330777 eV Core-core repulsion = 15239.019800 eV Total energy + Delta-G solvation = -2676.310977 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.36893 -39.04963 -35.77128 -34.38448 -33.28721 -29.67123 -29.40089 -28.49119 -28.43796 -27.69070 -26.03657 -22.49671 -21.59046 -20.51542 -18.01498 -17.64094 -17.43843 -16.45904 -15.88540 -15.75442 -15.07543 -14.49541 -14.39657 -14.26711 -14.22559 -13.88986 -13.69451 -13.63531 -13.46151 -13.39208 -13.31334 -13.15561 -13.15207 -12.81306 -12.76364 -12.61958 -11.88968 -11.84182 -11.49915 -11.27271 -10.75767 -10.71444 -10.16037 -10.14362 -9.22048 0.63459 0.92257 1.31718 1.40144 1.60044 1.78478 1.81965 1.83993 1.97333 1.99704 2.07688 2.41510 3.52399 3.60389 3.73592 3.93632 4.03957 4.12850 4.18402 4.34804 4.38355 4.45859 4.54919 4.60929 4.66228 4.67889 4.71317 4.71698 4.74669 4.78081 4.84714 5.04797 5.33807 5.43830 5.53301 5.58430 5.73723 6.01951 6.78472 6.81318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.098 3.902 3 C -0.250 4.250 4 C 0.185 3.815 5 O -0.606 6.606 6 Si 1.251 2.749 7 C -0.513 4.513 8 C -0.464 4.464 9 C -0.509 4.509 10 C -0.042 4.042 11 N -0.614 5.614 12 Si 1.060 2.940 13 H -0.253 1.253 14 H -0.236 1.236 15 H -0.248 1.248 16 C 0.086 3.914 17 N -0.298 5.298 18 N -0.371 5.371 19 C 0.099 3.901 20 H 0.085 0.915 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.322 0.678 34 H 0.192 0.808 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 -1.380 -1.147 2.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.031 4.031 3 C -0.262 4.262 4 C 0.124 3.876 5 O -0.563 6.563 6 Si 1.388 2.612 7 C -0.615 4.615 8 C -0.571 4.571 9 C -0.610 4.610 10 C -0.288 4.288 11 N -0.229 5.229 12 Si 0.874 3.126 13 H -0.177 1.177 14 H -0.158 1.158 15 H -0.172 1.172 16 C -0.101 4.101 17 N -0.118 5.118 18 N -0.153 5.153 19 C -0.043 4.043 20 H 0.103 0.897 21 H 0.096 0.904 22 H 0.100 0.900 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.209 0.791 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.242 -2.488 0.404 2.810 hybrid contribution -1.567 0.892 -1.894 2.615 sum -2.809 -1.596 -1.491 3.558 Atomic orbital electron populations 1.20546 0.87376 1.04147 1.03699 1.20727 0.94358 0.87138 1.00868 1.19369 0.93514 0.93092 1.20257 1.19824 0.88953 0.86980 0.91852 1.85370 1.46154 1.50399 1.74423 0.77308 0.63806 0.57182 0.62925 1.27198 1.09647 1.11535 1.13096 1.26261 1.14426 1.09089 1.07292 1.26976 1.11794 1.06004 1.16255 1.32392 1.02226 0.91723 1.02470 1.69536 1.02738 1.09226 1.41358 0.83568 0.74103 0.81176 0.73765 1.17702 1.15836 1.17198 1.23782 0.97715 0.91407 0.97167 1.77498 0.96043 1.12994 1.25217 1.48474 1.04044 1.05951 1.56835 1.21896 1.01194 0.77550 1.03619 0.89665 0.90428 0.90048 0.91608 0.90624 0.90786 0.91627 0.90643 0.90529 0.90548 0.91771 0.90736 0.90810 0.85945 0.79109 0.90496 0.88921 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.24 9.80 36.01 0.35 0.59 16 2 C 0.10 0.07 6.93 -82.26 -0.57 -0.50 16 3 C -0.25 -0.38 4.30 -105.06 -0.45 -0.83 16 4 C 0.18 0.05 1.83 -29.03 -0.05 -0.01 16 5 O -0.61 -0.09 7.50 -35.23 -0.26 -0.36 16 6 Si 1.25 -1.77 12.68 -169.99 -2.16 -3.93 16 7 C -0.51 0.24 8.04 101.05 0.81 1.05 16 8 C -0.46 0.45 8.65 101.05 0.87 1.32 16 9 C -0.51 0.48 8.56 101.05 0.87 1.34 16 10 C -0.04 -0.03 3.96 -13.89 -0.05 -0.09 16 11 N -0.61 -0.54 12.06 56.23 0.68 0.14 16 12 Si 1.06 1.42 28.26 -169.99 -4.80 -3.38 16 13 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 14 H -0.24 -0.19 6.27 56.52 0.35 0.16 16 15 H -0.25 -0.39 7.11 56.52 0.40 0.02 16 16 C 0.09 0.23 10.12 -17.37 -0.18 0.05 16 17 N -0.30 -1.15 12.57 30.62 0.39 -0.77 16 18 N -0.37 -0.60 4.01 -63.88 -0.26 -0.85 16 19 C 0.10 -0.21 11.27 59.85 0.67 0.47 16 20 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 21 H 0.08 -0.29 7.08 -51.93 -0.37 -0.65 16 22 H 0.08 -0.22 7.88 -51.93 -0.41 -0.63 16 23 H 0.07 -0.10 5.72 -51.93 -0.30 -0.39 16 24 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 25 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 26 H 0.06 -0.02 5.17 -51.93 -0.27 -0.29 16 27 H 0.07 -0.06 7.96 -51.92 -0.41 -0.47 16 28 H 0.08 -0.11 7.96 -51.93 -0.41 -0.53 16 29 H 0.08 -0.07 7.96 -51.93 -0.41 -0.48 16 30 H 0.06 -0.08 7.10 -51.93 -0.37 -0.45 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 33 H 0.32 -0.29 7.58 -40.82 -0.31 -0.60 16 34 H 0.19 0.20 7.96 -52.48 -0.42 -0.22 16 35 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 36 H 0.09 -0.21 8.14 -51.93 -0.42 -0.64 16 37 H 0.09 -0.38 7.05 -51.93 -0.37 -0.74 16 LS Contribution 306.75 15.07 4.62 4.62 Total: 0.00 -5.06 306.75 -5.33 -10.39 By element: Atomic # 1 Polarization: -3.44 SS G_CDS: -5.81 Total: -9.26 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 2.27 Total: 3.40 kcal Atomic # 7 Polarization: -2.29 SS G_CDS: 0.81 Total: -1.48 kcal Atomic # 8 Polarization: -0.09 SS G_CDS: -0.26 Total: -0.36 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: -6.96 Total: -7.31 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -5.06 -5.33 -10.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211400161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.227 kcal (2) G-P(sol) polarization free energy of solvation -5.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds