Wall clock time and date at job start Mon Mar 30 2020 07:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.90268 * 2 1 4 4 N 1.40080 * 108.20506 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03473 * 179.97438 * 4 3 2 6 6 C 1.34950 * 107.92792 * 359.75752 * 4 3 2 7 7 C 1.35313 * 107.74609 * 0.38916 * 6 4 3 8 8 C 1.50698 * 126.04269 * 179.87452 * 7 6 4 9 9 O 1.42898 * 109.46839 * 24.68978 * 8 7 6 10 10 Si 1.63099 * 114.00054 * 97.52597 * 9 8 7 11 11 C 1.86296 * 109.47179 * 65.33770 * 10 9 8 12 12 C 1.86307 * 109.47186 * 185.33716 * 10 9 8 13 13 C 1.86299 * 109.46909 * 305.33427 * 10 9 8 14 14 C 1.50698 * 109.47198 * 264.69218 * 8 7 6 15 15 N 1.27946 * 119.99988 * 15.30862 * 14 8 7 16 16 Si 1.86799 * 120.00329 * 195.31093 * 14 8 7 17 17 H 1.48502 * 109.47016 * 265.46049 * 16 14 8 18 18 H 1.48498 * 109.46837 * 25.45695 * 16 14 8 19 19 H 1.48498 * 109.47576 * 145.45806 * 16 14 8 20 20 H 1.08997 * 109.47106 * 269.97804 * 1 2 3 21 21 H 1.09005 * 109.46841 * 29.97377 * 1 2 3 22 22 H 1.08996 * 109.47168 * 149.97523 * 1 2 3 23 23 H 1.08996 * 109.46796 * 89.97383 * 5 4 3 24 24 H 1.09000 * 109.46996 * 209.97566 * 5 4 3 25 25 H 1.09003 * 109.46981 * 329.97401 * 5 4 3 26 26 H 1.07994 * 126.12341 * 180.23969 * 6 4 3 27 27 H 1.08990 * 109.47422 * 144.69050 * 8 7 6 28 28 H 1.08992 * 109.47202 * 61.62190 * 11 10 9 29 29 H 1.09000 * 109.47381 * 181.62416 * 11 10 9 30 30 H 1.09005 * 109.46839 * 301.61923 * 11 10 9 31 31 H 1.09000 * 109.46678 * 59.99608 * 12 10 9 32 32 H 1.08994 * 109.46788 * 179.97438 * 12 10 9 33 33 H 1.09001 * 109.46801 * 299.99996 * 12 10 9 34 34 H 1.09002 * 109.47164 * 60.00413 * 13 10 9 35 35 H 1.08999 * 109.47002 * 179.97438 * 13 10 9 36 36 H 1.08992 * 109.47590 * 300.00024 * 13 10 9 37 37 H 0.96998 * 120.00044 * 180.02562 * 15 14 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7900 1.5007 -0.0013 6 6 3.6142 -0.7155 0.0045 7 6 2.3272 -1.1331 -0.0006 8 6 1.8598 -2.5658 -0.0003 9 8 2.8734 -3.3972 0.5684 10 14 2.6382 -3.7463 2.1441 11 6 1.0992 -4.7799 2.3283 12 6 4.1041 -4.6937 2.7959 13 6 2.4429 -2.1642 3.1082 14 6 1.5854 -3.0050 -1.4155 15 7 2.0287 -2.3142 -2.3970 16 14 0.5981 -4.5578 -1.7368 17 1 1.5243 -5.7029 -1.9268 18 1 -0.2912 -4.8274 -0.5785 19 1 -0.2238 -4.3776 -2.9605 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8903 -0.5135 22 1 -0.3633 -0.8897 -0.5142 23 1 5.0831 1.7161 1.0261 24 1 5.6093 0.9978 -0.5151 25 1 4.5563 2.4329 -0.5156 26 1 4.4891 -1.3486 0.0091 27 1 0.9473 -2.6502 0.5897 28 1 1.2249 -5.7181 1.7879 29 1 0.9261 -4.9890 3.3839 30 1 0.2462 -4.2372 1.9208 31 1 5.0046 -4.0889 2.6880 32 1 3.9471 -4.9265 3.8490 33 1 4.2184 -5.6193 2.2318 34 1 1.5852 -1.6099 2.7269 35 1 2.2853 -2.3975 4.1612 36 1 3.3433 -1.5595 3.0005 37 1 1.8518 -2.5967 -3.3079 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215845413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:33 Heat of formation + Delta-G solvation = 16.875351 kcal Electronic energy + Delta-G solvation = -17966.438405 eV Core-core repulsion = 15290.128911 eV Total energy + Delta-G solvation = -2676.309493 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.08946 -38.68859 -35.80616 -34.66321 -31.38958 -30.43285 -29.54431 -28.68109 -28.35552 -27.77950 -25.68039 -22.12489 -21.07930 -20.14846 -18.19467 -17.77339 -17.03344 -16.40959 -15.82629 -15.31056 -14.86268 -14.49588 -14.38853 -14.21328 -14.11384 -13.93174 -13.75046 -13.55423 -13.31983 -13.22936 -13.12000 -13.07410 -13.00240 -12.89033 -12.80365 -12.45282 -12.06640 -11.75437 -11.50516 -11.25546 -10.71360 -10.41396 -9.91338 -9.77492 -9.06081 0.70146 1.05121 1.21608 1.38612 1.45082 1.76044 1.82209 1.87565 1.89836 2.03168 2.05201 2.52260 3.61884 3.67688 4.07950 4.13771 4.25104 4.31774 4.42302 4.51573 4.57521 4.69962 4.71308 4.72741 4.74889 4.78406 4.80552 4.83637 4.89288 4.99729 5.05770 5.29343 5.43611 5.53311 5.61249 5.66568 5.91522 6.28519 6.95202 7.00931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.087 3.913 3 N -0.297 5.297 4 N -0.378 5.378 5 C 0.103 3.897 6 C 0.094 3.906 7 C -0.239 4.239 8 C 0.232 3.768 9 O -0.613 6.613 10 Si 1.253 2.747 11 C -0.513 4.513 12 C -0.466 4.466 13 C -0.501 4.501 14 C -0.004 4.004 15 N -0.593 5.593 16 Si 0.913 3.087 17 H -0.233 1.233 18 H -0.227 1.227 19 H -0.244 1.244 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.173 0.827 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -1.907 0.930 2.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 N -0.120 5.120 4 N -0.159 5.159 5 C -0.039 4.039 6 C -0.052 4.052 7 C -0.251 4.251 8 C 0.173 3.827 9 O -0.570 6.570 10 Si 1.390 2.610 11 C -0.615 4.615 12 C -0.573 4.573 13 C -0.603 4.603 14 C -0.254 4.254 15 N -0.207 5.207 16 Si 0.728 3.272 17 H -0.156 1.156 18 H -0.148 1.148 19 H -0.167 1.167 20 H 0.096 0.904 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.191 0.809 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.587 -0.415 0.471 0.859 hybrid contribution -0.209 -1.219 0.063 1.239 sum 0.377 -1.634 0.534 1.760 Atomic orbital electron populations 1.20226 0.87128 1.03405 1.02992 1.22031 0.96508 0.90062 0.99369 1.77305 0.86440 1.22548 1.25732 1.48310 1.05441 1.04828 1.57307 1.21843 0.83681 0.95079 1.03265 1.22105 0.99315 0.84214 0.99587 1.19734 0.92569 0.94521 1.18273 1.18668 0.88692 0.84885 0.90481 1.85362 1.53218 1.67338 1.51086 0.77285 0.65592 0.65351 0.52793 1.27035 1.18284 1.11037 1.05161 1.26304 1.15137 1.09249 1.06562 1.26950 1.04899 1.18647 1.09801 1.30308 0.97359 1.01552 0.96220 1.68174 1.16599 1.31877 1.04083 0.85996 0.80505 0.77815 0.82921 1.15551 1.14832 1.16728 0.90359 0.90673 0.90746 0.90856 0.89483 0.89342 0.80946 0.90229 0.90889 0.90557 0.91184 0.90854 0.90535 0.90766 0.91198 0.91207 0.91327 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.03 10.22 36.01 0.37 0.34 16 2 C 0.09 0.28 7.22 -82.40 -0.59 -0.32 16 3 N -0.30 -1.46 12.58 33.67 0.42 -1.03 16 4 N -0.38 -1.07 4.01 -68.16 -0.27 -1.34 16 5 C 0.10 -0.09 11.47 59.85 0.69 0.60 16 6 C 0.09 0.20 10.91 -17.22 -0.19 0.01 16 7 C -0.24 -0.52 3.60 -105.05 -0.38 -0.90 16 8 C 0.23 0.13 1.62 -29.04 -0.05 0.08 16 9 O -0.61 -0.05 7.68 -35.23 -0.27 -0.32 16 10 Si 1.25 -2.00 12.59 -169.99 -2.14 -4.14 16 11 C -0.51 0.72 8.65 101.05 0.87 1.59 16 12 C -0.47 0.56 8.65 101.05 0.87 1.43 16 13 C -0.50 0.21 8.18 101.05 0.83 1.04 16 14 C 0.00 0.00 5.28 -13.90 -0.07 -0.08 16 15 N -0.59 -0.99 12.76 56.23 0.72 -0.27 16 16 Si 0.91 -0.60 29.56 -169.99 -5.02 -5.62 16 17 H -0.23 -0.04 7.11 56.52 0.40 0.36 16 18 H -0.23 0.29 7.11 56.52 0.40 0.69 16 19 H -0.24 0.08 7.11 56.52 0.40 0.48 16 20 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 21 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 22 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 23 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 24 H 0.09 -0.25 8.14 -51.93 -0.42 -0.68 16 25 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.17 0.03 8.03 -52.49 -0.42 -0.39 16 27 H 0.08 -0.14 6.18 -51.93 -0.32 -0.46 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.08 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.12 7.39 -51.93 -0.38 -0.51 16 31 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 32 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 34 H 0.07 0.01 7.83 -51.93 -0.41 -0.40 16 35 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 36 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 37 H 0.34 -0.04 8.23 -40.82 -0.34 -0.38 16 LS Contribution 318.40 15.07 4.80 4.80 Total: 0.00 -5.81 318.40 -5.51 -11.32 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -6.09 Total: -7.18 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 2.35 Total: 3.80 kcal Atomic # 7 Polarization: -3.51 SS G_CDS: 0.87 Total: -2.65 kcal Atomic # 8 Polarization: -0.05 SS G_CDS: -0.27 Total: -0.32 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: -7.16 Total: -9.76 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -5.81 -5.51 -11.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215845413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.190 kcal (2) G-P(sol) polarization free energy of solvation -5.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds