Wall clock time and date at job start Mon Mar 30 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35966 * 117.00305 * 2 1 4 4 C 1.37822 * 120.01670 * 0.02562 * 3 2 1 5 5 C 1.40792 * 119.64323 * 179.97438 * 4 3 2 6 6 C 1.41201 * 120.15867 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99982 * 334.52360 * 6 5 4 8 8 C 1.39874 * 120.00028 * 154.51794 * 6 5 4 9 9 N 1.30892 * 120.00103 * 343.08593 * 8 6 5 10 10 Si 1.86797 * 120.00068 * 163.08951 * 8 6 5 11 11 H 1.48502 * 109.47027 * 59.99784 * 10 8 6 12 12 H 1.48500 * 109.47243 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46950 * 299.99997 * 10 8 6 14 14 C 1.40846 * 119.68700 * 0.02562 * 5 4 3 15 15 C 1.36460 * 120.02618 * 0.02562 * 14 5 4 16 16 C 1.50706 * 119.82033 * 179.97438 * 15 14 5 17 17 H 1.08998 * 109.47071 * 215.00081 * 16 15 14 18 18 C 1.52999 * 109.47054 * 94.99731 * 16 15 14 19 19 F 1.39905 * 109.46834 * 335.00077 * 16 15 14 20 20 C 1.39153 * 120.36487 * 359.67891 * 15 14 5 21 21 O 1.35740 * 119.84338 * 180.29876 * 20 15 14 22 22 C 1.42895 * 117.00261 * 270.29888 * 21 20 15 23 23 H 1.09006 * 109.46945 * 299.99718 * 1 2 3 24 24 H 1.08994 * 109.47048 * 59.99846 * 1 2 3 25 25 H 1.08998 * 109.46976 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.17554 * 0.02812 * 4 3 2 27 27 H 0.96992 * 120.00157 * 180.02562 * 9 8 6 28 28 H 1.07993 * 119.98906 * 179.97438 * 14 5 4 29 29 H 1.08993 * 109.46993 * 60.00343 * 18 16 15 30 30 H 1.09001 * 109.46943 * 180.02562 * 18 16 15 31 31 H 1.08998 * 109.47468 * 300.00107 * 18 16 15 32 32 H 1.09001 * 109.46829 * 60.00086 * 22 21 20 33 33 H 1.09002 * 109.47455 * 180.02562 * 22 21 20 34 34 H 1.08997 * 109.47275 * 300.00214 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2961 2.3676 0.0005 5 6 1.9435 3.6178 0.0011 6 6 1.1856 4.8091 0.0011 7 1 0.1834 4.8116 -0.4016 8 6 1.7326 5.9861 0.5227 9 7 2.7858 5.9308 1.2980 10 14 0.9600 7.6367 0.1131 11 1 -0.4477 7.6552 0.5855 12 1 1.7215 8.7201 0.7852 13 1 0.9918 7.8470 -1.3566 14 6 3.3508 3.6746 0.0005 15 6 4.0808 2.5216 -0.0011 16 6 5.5864 2.5878 -0.0022 17 1 5.9858 1.7633 -0.5927 18 6 6.1025 2.4834 1.4343 19 9 5.9993 3.8031 -0.5590 20 6 3.4426 1.2851 0.0046 21 8 4.1791 0.1448 0.0091 22 6 4.5360 -0.4020 -1.2619 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.2174 2.3147 0.0014 27 1 3.1649 6.7469 1.6600 28 1 3.8525 4.6309 0.0005 29 1 5.7809 1.5366 1.8680 30 1 7.1915 2.5317 1.4334 31 1 5.7031 3.3079 2.0247 32 1 5.1268 0.3261 -1.8177 33 1 5.1214 -1.3098 -1.1156 34 1 3.6317 -0.6397 -1.8221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216241911.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:19 Heat of formation + Delta-G solvation = -116.285205 kcal Electronic energy + Delta-G solvation = -19355.306239 eV Core-core repulsion = 16167.918706 eV Total energy + Delta-G solvation = -3187.387533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.91618 -39.23684 -37.24359 -36.11032 -33.56324 -31.91294 -29.24627 -28.22542 -26.75561 -26.56691 -24.49417 -22.82024 -21.00458 -19.77948 -17.79848 -16.76438 -16.27585 -15.61657 -15.30153 -15.09045 -14.63073 -14.46989 -14.30093 -14.08994 -13.76944 -13.20467 -12.50894 -12.42625 -12.11273 -11.84305 -11.58885 -11.36251 -11.30028 -11.08532 -10.90809 -10.72334 -10.65214 -10.46407 -10.26316 -9.80118 -9.61956 -9.17099 -8.85215 -7.52592 -6.97858 -6.90346 -4.51310 2.47397 2.85919 3.00166 3.01440 3.07353 3.82080 4.11333 4.33102 4.88342 5.35764 5.38904 5.44216 5.66051 5.67541 5.72404 5.83909 5.90707 5.92282 5.99918 6.12717 6.23085 6.49280 6.56934 6.65753 6.69369 6.87899 7.01069 7.07551 7.36955 7.73763 7.76479 8.03508 8.16631 8.35012 8.57165 8.70870 8.94782 10.02191 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.009019 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.960883 B = 3103.877577 C = 4343.341882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.323 6.323 3 C 0.140 3.860 4 C -0.305 4.305 5 C 0.137 3.863 6 C -0.451 4.451 7 H 0.081 0.919 8 C 0.075 3.925 9 N -0.778 5.778 10 Si 0.913 3.087 11 H -0.264 1.264 12 H -0.276 1.276 13 H -0.262 1.262 14 C -0.156 4.156 15 C -0.089 4.089 16 C 0.144 3.856 17 H 0.076 0.924 18 C -0.165 4.165 19 F -0.216 7.216 20 C -0.066 4.066 21 O -0.320 6.320 22 C 0.028 3.972 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.286 0.714 28 H 0.131 0.869 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 -4.672 -1.916 5.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.237 6.237 3 C 0.095 3.905 4 C -0.325 4.325 5 C 0.134 3.866 6 C -0.480 4.480 7 H 0.099 0.901 8 C -0.145 4.145 9 N -0.401 5.401 10 Si 0.736 3.264 11 H -0.189 1.189 12 H -0.201 1.201 13 H -0.186 1.186 14 C -0.176 4.176 15 C -0.090 4.090 16 C 0.108 3.892 17 H 0.094 0.906 18 C -0.223 4.223 19 F -0.196 7.196 20 C -0.110 4.110 21 O -0.236 6.236 22 C -0.067 4.067 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.097 0.903 28 H 0.149 0.851 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.333 -4.771 -1.611 5.209 hybrid contribution -0.707 1.056 -0.398 1.332 sum 0.627 -3.715 -2.010 4.270 Atomic orbital electron populations 1.22821 0.80325 1.01945 1.01065 1.85998 1.19793 1.28393 1.89527 1.19018 0.90995 0.83479 0.96979 1.20939 0.97927 0.91818 1.21827 1.17391 0.91731 0.91519 0.85959 1.19552 1.01274 0.92733 1.34395 0.90085 1.25987 0.94369 1.01573 0.92571 1.69823 1.18439 1.31204 1.20658 0.86289 0.79952 0.80031 0.80088 1.18881 1.20078 1.18615 1.20863 0.93821 0.96779 1.06088 1.19519 0.93410 0.93114 1.02974 1.20062 0.92396 0.82110 0.94652 0.90599 1.22251 1.00178 1.04130 0.95699 1.92766 1.91427 1.48298 1.87156 1.16982 0.85588 0.84479 1.24000 1.86089 1.71135 1.39687 1.26697 1.22891 0.98775 0.97383 0.87660 0.93232 0.93450 0.89768 0.87630 0.90329 0.85089 0.90483 0.92595 0.91171 0.95112 0.90770 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.55 16 2 O -0.32 -6.87 10.28 -34.17 -0.35 -7.22 16 3 C 0.14 3.32 6.70 -39.14 -0.26 3.06 16 4 C -0.30 -7.43 8.78 -38.77 -0.34 -7.77 16 5 C 0.14 3.60 5.56 -106.82 -0.59 3.00 16 6 C -0.45 -11.58 9.04 -37.85 -0.34 -11.92 16 7 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 8 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 9 N -0.78 -19.57 10.96 55.54 0.61 -18.96 16 10 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 11 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 12 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 13 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 14 C -0.16 -4.06 7.98 -39.24 -0.31 -4.37 16 15 C -0.09 -2.11 5.06 -104.92 -0.53 -2.65 16 16 C 0.14 2.95 3.89 -27.88 -0.11 2.85 16 17 H 0.08 1.43 6.35 -51.93 -0.33 1.10 16 18 C -0.17 -3.01 9.63 37.16 0.36 -2.65 16 19 F -0.22 -4.70 16.05 2.25 0.04 -4.66 16 20 C -0.07 -1.55 5.73 -38.65 -0.22 -1.77 16 21 O -0.32 -6.86 9.45 -33.46 -0.32 -7.18 16 22 C 0.03 0.49 10.78 101.05 1.09 1.58 16 23 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 24 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.11 2.38 6.29 -52.48 -0.33 2.05 16 27 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 28 H 0.13 3.55 5.55 -52.49 -0.29 3.26 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.03 0.51 7.12 -51.93 -0.37 0.14 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 291.43 15.07 4.39 4.39 Total: -1.00 -28.30 291.43 -5.23 -33.53 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.20 Total: 4.41 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -0.36 Total: -17.36 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.67 Total: -14.40 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.04 Total: -4.66 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.30 -5.23 -33.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216241911.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.756 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds