Wall clock time and date at job start Mon Mar 30 2020 06:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35966 * 117.00305 * 2 1 4 4 C 1.37822 * 120.01670 * 0.02562 * 3 2 1 5 5 C 1.40792 * 119.64323 * 179.97438 * 4 3 2 6 6 C 1.41201 * 120.15867 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99982 * 334.52360 * 6 5 4 8 8 C 1.39874 * 120.00028 * 154.51794 * 6 5 4 9 9 N 1.30892 * 120.00103 * 343.08593 * 8 6 5 10 10 Si 1.86797 * 120.00068 * 163.08951 * 8 6 5 11 11 H 1.48502 * 109.47027 * 59.99784 * 10 8 6 12 12 H 1.48500 * 109.47243 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46950 * 299.99997 * 10 8 6 14 14 C 1.40846 * 119.68700 * 0.02562 * 5 4 3 15 15 C 1.36460 * 120.02618 * 0.02562 * 14 5 4 16 16 C 1.50706 * 119.82033 * 179.97438 * 15 14 5 17 17 H 1.08998 * 109.47071 * 215.00081 * 16 15 14 18 18 C 1.52999 * 109.47054 * 94.99731 * 16 15 14 19 19 F 1.39905 * 109.46834 * 335.00077 * 16 15 14 20 20 C 1.39153 * 120.36487 * 359.67891 * 15 14 5 21 21 O 1.35740 * 119.84338 * 180.29876 * 20 15 14 22 22 C 1.42895 * 117.00261 * 270.29888 * 21 20 15 23 23 H 1.09006 * 109.46945 * 299.99718 * 1 2 3 24 24 H 1.08994 * 109.47048 * 59.99846 * 1 2 3 25 25 H 1.08998 * 109.46976 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.17554 * 0.02812 * 4 3 2 27 27 H 0.96992 * 120.00157 * 180.02562 * 9 8 6 28 28 H 1.07993 * 119.98906 * 179.97438 * 14 5 4 29 29 H 1.08993 * 109.46993 * 60.00343 * 18 16 15 30 30 H 1.09001 * 109.46943 * 180.02562 * 18 16 15 31 31 H 1.08998 * 109.47468 * 300.00107 * 18 16 15 32 32 H 1.09001 * 109.46829 * 60.00086 * 22 21 20 33 33 H 1.09002 * 109.47455 * 180.02562 * 22 21 20 34 34 H 1.08997 * 109.47275 * 300.00214 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2961 2.3676 0.0005 5 6 1.9435 3.6178 0.0011 6 6 1.1856 4.8091 0.0011 7 1 0.1834 4.8116 -0.4016 8 6 1.7326 5.9861 0.5227 9 7 2.7858 5.9308 1.2980 10 14 0.9600 7.6367 0.1131 11 1 -0.4477 7.6552 0.5855 12 1 1.7215 8.7201 0.7852 13 1 0.9918 7.8470 -1.3566 14 6 3.3508 3.6746 0.0005 15 6 4.0808 2.5216 -0.0011 16 6 5.5864 2.5878 -0.0022 17 1 5.9858 1.7633 -0.5927 18 6 6.1025 2.4834 1.4343 19 9 5.9993 3.8031 -0.5590 20 6 3.4426 1.2851 0.0046 21 8 4.1791 0.1448 0.0091 22 6 4.5360 -0.4020 -1.2619 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.2174 2.3147 0.0014 27 1 3.1649 6.7469 1.6600 28 1 3.8525 4.6309 0.0005 29 1 5.7809 1.5366 1.8680 30 1 7.1915 2.5317 1.4334 31 1 5.7031 3.3079 2.0247 32 1 5.1268 0.3261 -1.8177 33 1 5.1214 -1.3098 -1.1156 34 1 3.6317 -0.6397 -1.8221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216241911.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:18 Heat of formation + Delta-G solvation = -131.925144 kcal Electronic energy + Delta-G solvation = -19355.984438 eV Core-core repulsion = 16167.918706 eV Total energy + Delta-G solvation = -3188.065731 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.60729 -40.97047 -38.88114 -37.88371 -35.35646 -33.60935 -30.99166 -29.94211 -28.35225 -28.02256 -26.23675 -24.46234 -22.82253 -21.51134 -19.58892 -18.49564 -17.96772 -17.33614 -17.02807 -16.68110 -16.29163 -16.11159 -15.87771 -15.71827 -15.28341 -14.93371 -14.22581 -14.02534 -13.62645 -13.51397 -13.09484 -12.94900 -12.89383 -12.67310 -12.60741 -12.36762 -12.19719 -12.11729 -11.92485 -11.52981 -11.33894 -10.93687 -10.53943 -9.37830 -8.80541 -8.72096 -6.43465 0.66601 0.99081 1.37129 1.46960 1.50700 2.16567 2.50989 2.57539 3.20524 3.54977 3.76205 3.82652 4.06602 4.25263 4.41050 4.42776 4.51229 4.60339 4.67304 4.72622 4.80768 4.84739 4.89105 4.92880 4.99823 5.17969 5.20474 5.27884 5.54304 5.87208 5.91168 6.12327 6.39895 6.51869 6.72641 6.81985 7.17090 8.23542 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.009019 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.960883 B = 3103.877577 C = 4343.341882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.332 6.332 3 C 0.133 3.867 4 C -0.315 4.315 5 C 0.109 3.891 6 C -0.485 4.485 7 H 0.084 0.916 8 C 0.035 3.965 9 N -0.810 5.810 10 Si 0.985 3.015 11 H -0.256 1.256 12 H -0.267 1.267 13 H -0.260 1.260 14 C -0.184 4.184 15 C -0.093 4.093 16 C 0.140 3.860 17 H 0.100 0.900 18 C -0.157 4.157 19 F -0.225 7.225 20 C -0.066 4.066 21 O -0.330 6.330 22 C 0.025 3.975 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.292 0.708 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.112 0.888 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.153 -5.524 -2.232 6.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.246 6.246 3 C 0.088 3.912 4 C -0.335 4.335 5 C 0.106 3.894 6 C -0.513 4.513 7 H 0.102 0.898 8 C -0.182 4.182 9 N -0.434 5.434 10 Si 0.805 3.195 11 H -0.180 1.180 12 H -0.191 1.191 13 H -0.185 1.185 14 C -0.203 4.203 15 C -0.094 4.094 16 C 0.104 3.896 17 H 0.117 0.883 18 C -0.214 4.214 19 F -0.206 7.206 20 C -0.111 4.111 21 O -0.247 6.247 22 C -0.070 4.070 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.142 0.858 26 H 0.135 0.865 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.471 -5.651 -1.928 6.149 hybrid contribution -0.737 1.106 -0.317 1.366 sum 0.734 -4.545 -2.245 5.122 Atomic orbital electron populations 1.23162 0.77729 1.04698 1.01269 1.85976 1.22430 1.27032 1.89177 1.19165 0.91462 0.84140 0.96428 1.21094 0.98644 0.91693 1.22073 1.17751 0.92322 0.92609 0.86746 1.19824 1.01794 0.93778 1.35890 0.89829 1.26852 0.94689 1.04885 0.91753 1.69886 1.19685 1.32458 1.21369 0.85204 0.79319 0.75259 0.79723 1.17954 1.19082 1.18452 1.20753 0.94060 0.96785 1.08732 1.19856 0.95317 0.92647 1.01557 1.20292 0.90524 0.82295 0.96467 0.88261 1.22188 1.02198 1.03383 0.93647 1.92746 1.91305 1.49130 1.87427 1.17125 0.86014 0.85131 1.22871 1.86013 1.70756 1.38727 1.29163 1.23114 0.99201 0.98792 0.85881 0.93314 0.92946 0.85758 0.86537 0.89725 0.87038 0.90162 0.89206 0.93187 0.94435 0.86999 0.95048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.81 113.37 1.11 1.91 16 2 O -0.33 -13.70 10.28 -79.27 -0.81 -14.52 16 3 C 0.13 6.31 6.70 22.55 0.15 6.46 16 4 C -0.31 -15.62 8.78 22.80 0.20 -15.42 16 5 C 0.11 5.89 5.56 -21.29 -0.12 5.77 16 6 C -0.48 -25.64 9.04 23.39 0.21 -25.43 16 7 H 0.08 4.19 7.90 -2.91 -0.02 4.16 16 8 C 0.04 1.75 5.14 85.23 0.44 2.19 16 9 N -0.81 -41.96 10.96 21.82 0.24 -41.72 16 10 Si 0.98 37.31 29.59 68.60 2.03 39.34 16 11 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 12 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 13 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 14 C -0.18 -9.87 7.98 22.49 0.18 -9.69 16 15 C -0.09 -4.44 5.06 -20.06 -0.10 -4.54 16 16 C 0.14 5.64 3.89 29.85 0.12 5.76 16 17 H 0.10 3.52 6.35 -2.39 -0.02 3.50 16 18 C -0.16 -5.52 9.63 71.98 0.69 -4.82 16 19 F -0.23 -9.81 16.05 44.97 0.72 -9.09 16 20 C -0.07 -3.11 5.73 22.87 0.13 -2.98 16 21 O -0.33 -13.55 9.45 -76.75 -0.73 -14.28 16 22 C 0.02 0.79 10.78 113.37 1.22 2.01 16 23 H 0.05 1.51 7.66 -2.38 -0.02 1.49 16 24 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 25 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 26 H 0.12 5.32 6.29 -2.91 -0.02 5.30 16 27 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 28 H 0.11 6.34 5.55 -2.91 -0.02 6.32 16 29 H 0.08 2.75 8.14 -2.39 -0.02 2.74 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.14 7.12 -2.39 -0.02 1.12 16 33 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -62.23 291.43 6.79 -55.44 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 1.11 Total: 23.61 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 4.24 Total: -38.78 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.24 Total: -41.72 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.54 Total: -28.80 kcal Atomic # 9 Polarization: -9.81 SS G_CDS: 0.72 Total: -9.09 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -62.23 6.79 -55.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216241911.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.488 kcal (2) G-P(sol) polarization free energy of solvation -62.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds