Wall clock time and date at job start Mon Mar 30 2020 06:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35968 * 117.00042 * 2 1 4 4 C 1.37823 * 120.01437 * 359.72814 * 3 2 1 5 5 C 1.40806 * 119.63869 * 179.75375 * 4 3 2 6 6 C 1.41198 * 120.15170 * 180.22543 * 5 4 3 7 7 H 1.07998 * 119.99309 * 204.74106 * 6 5 4 8 8 C 1.39870 * 120.00618 * 24.75073 * 6 5 4 9 9 N 1.30892 * 119.99843 * 17.78311 * 8 6 5 10 10 Si 1.86795 * 120.00329 * 197.78651 * 8 6 5 11 11 H 1.48507 * 109.47118 * 89.99563 * 10 8 6 12 12 H 1.48494 * 109.47152 * 209.99718 * 10 8 6 13 13 H 1.48502 * 109.46897 * 329.99852 * 10 8 6 14 14 C 1.40847 * 119.68152 * 0.51872 * 5 4 3 15 15 C 1.36451 * 120.03467 * 359.73081 * 14 5 4 16 16 C 1.50704 * 119.82381 * 180.02562 * 15 14 5 17 17 H 1.09003 * 109.46801 * 335.02511 * 16 15 14 18 18 C 1.52999 * 109.46982 * 95.01824 * 16 15 14 19 19 F 1.39891 * 109.47260 * 215.02296 * 16 15 14 20 20 C 1.39159 * 120.36063 * 0.02562 * 15 14 5 21 21 O 1.35742 * 119.83984 * 179.97438 * 20 15 14 22 22 C 1.42900 * 116.99677 * 270.01539 * 21 20 15 23 23 H 1.08997 * 109.46903 * 60.00314 * 1 2 3 24 24 H 1.08996 * 109.46760 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46602 * 299.99948 * 1 2 3 26 26 H 1.07994 * 120.18209 * 359.97438 * 4 3 2 27 27 H 0.97004 * 120.00276 * 180.02562 * 9 8 6 28 28 H 1.08001 * 119.97816 * 179.75458 * 14 5 4 29 29 H 1.09003 * 109.46791 * 60.00681 * 18 16 15 30 30 H 1.09000 * 109.46790 * 180.02562 * 18 16 15 31 31 H 1.09000 * 109.47350 * 300.00361 * 18 16 15 32 32 H 1.09008 * 109.46959 * 60.00283 * 22 21 20 33 33 H 1.08999 * 109.47265 * 180.02562 * 22 21 20 34 34 H 1.09002 * 109.47119 * 300.00650 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2960 2.3675 -0.0057 5 6 1.9434 3.6179 -0.0004 6 6 1.1853 4.8091 -0.0013 7 1 1.6138 5.7215 -0.3891 8 6 -0.1204 4.8076 0.5002 9 7 -0.5231 3.8319 1.2742 10 14 -1.2895 6.1980 0.0653 11 1 -2.0304 5.8523 -1.1745 12 1 -2.2527 6.4009 1.1771 13 1 -0.5150 7.4461 -0.1527 14 6 3.3508 3.6746 -0.0004 15 6 4.0807 2.5218 0.0000 16 6 5.5863 2.5880 0.0005 17 1 5.9085 3.5346 -0.4334 18 6 6.1008 2.4845 1.4377 19 9 6.0999 1.5293 -0.7561 20 6 3.4425 1.2852 -0.0001 21 8 4.1791 0.1450 -0.0003 22 6 4.5313 -0.3996 -1.2736 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 0.2174 2.3147 -0.0105 27 1 -1.4287 3.8306 1.6217 28 1 3.8523 4.6311 -0.0004 29 1 5.7787 1.5378 1.8716 30 1 7.1897 2.5328 1.4381 31 1 5.7006 3.3093 2.0272 32 1 5.1201 0.3295 -1.8303 33 1 5.1173 -1.3076 -1.1310 34 1 3.6249 -0.6363 -1.8309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216241957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:21 Heat of formation + Delta-G solvation = -126.405970 kcal Electronic energy + Delta-G solvation = -19465.477635 eV Core-core repulsion = 16277.651233 eV Total energy + Delta-G solvation = -3187.826402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.58452 -40.88020 -38.73064 -37.87124 -35.60491 -33.41244 -31.09229 -29.76980 -28.42375 -27.99674 -26.16244 -24.44476 -22.60091 -21.79155 -19.50504 -18.51389 -17.76641 -17.60826 -16.71036 -16.64768 -16.35126 -16.13116 -15.93445 -15.62714 -15.27177 -14.94688 -14.16573 -13.94042 -13.54342 -13.45754 -13.11641 -12.99533 -12.94879 -12.80415 -12.39865 -12.34033 -12.11412 -11.98065 -11.73812 -11.55790 -11.28823 -10.95243 -10.44760 -9.27812 -8.91516 -8.64405 -6.41620 0.70955 0.95831 1.38855 1.47162 1.52015 2.17564 2.51730 2.61519 3.26194 3.61393 3.76899 3.86531 4.10985 4.31133 4.37114 4.42581 4.59525 4.61931 4.71169 4.75342 4.86948 4.89359 4.92244 4.94212 5.05352 5.19289 5.25430 5.35224 5.55596 5.86769 5.95060 6.07107 6.40513 6.58148 6.75584 6.83928 7.21641 8.24557 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.007782 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.620588 B = 3597.214955 C = 4477.470760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.336 6.336 3 C 0.112 3.888 4 C -0.263 4.263 5 C 0.106 3.894 6 C -0.483 4.483 7 H 0.087 0.913 8 C 0.037 3.963 9 N -0.815 5.815 10 Si 0.984 3.016 11 H -0.263 1.263 12 H -0.268 1.268 13 H -0.255 1.255 14 C -0.234 4.234 15 C -0.081 4.081 16 C 0.139 3.861 17 H 0.107 0.893 18 C -0.160 4.160 19 F -0.213 7.213 20 C -0.065 4.065 21 O -0.332 6.332 22 C 0.027 3.973 23 H 0.044 0.956 24 H 0.123 0.877 25 H 0.044 0.956 26 H 0.126 0.874 27 H 0.291 0.709 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 -1.171 -2.142 4.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C 0.066 3.934 4 C -0.283 4.283 5 C 0.103 3.897 6 C -0.511 4.511 7 H 0.105 0.895 8 C -0.179 4.179 9 N -0.440 5.440 10 Si 0.804 3.196 11 H -0.188 1.188 12 H -0.193 1.193 13 H -0.178 1.178 14 C -0.253 4.253 15 C -0.082 4.082 16 C 0.104 3.896 17 H 0.125 0.875 18 C -0.218 4.218 19 F -0.194 7.194 20 C -0.110 4.110 21 O -0.249 6.249 22 C -0.067 4.067 23 H 0.063 0.937 24 H 0.141 0.859 25 H 0.062 0.938 26 H 0.143 0.857 27 H 0.101 0.899 28 H 0.137 0.863 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.446 -1.578 -1.848 4.216 hybrid contribution -1.147 0.516 -0.279 1.288 sum 2.299 -1.062 -2.126 3.307 Atomic orbital electron populations 1.23038 0.78075 1.04132 1.00880 1.85952 1.22098 1.27611 1.89355 1.19522 0.91766 0.84493 0.97573 1.21374 0.99857 0.91192 1.15888 1.17748 0.91868 0.93086 0.86965 1.19855 0.98415 0.96352 1.36464 0.89524 1.26819 0.99852 0.99660 0.91608 1.69905 1.19457 1.32619 1.22013 0.85169 0.77381 0.78138 0.78904 1.18785 1.19300 1.17822 1.20591 0.93548 0.96375 1.14814 1.19886 0.95542 0.92207 1.00588 1.20419 0.88342 0.88068 0.92815 0.87504 1.22226 1.02394 1.03257 0.93891 1.92692 1.88085 1.60573 1.78011 1.17472 0.85943 0.85901 1.21704 1.85946 1.70838 1.38938 1.29133 1.23217 0.98492 0.98950 0.86086 0.93691 0.85898 0.93772 0.85654 0.89857 0.86334 0.92964 0.89152 0.90433 0.92593 0.88402 0.96286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.25 9.81 113.37 1.11 2.36 16 2 O -0.34 -15.64 10.28 -79.29 -0.81 -16.45 16 3 C 0.11 5.68 6.70 22.55 0.15 5.83 16 4 C -0.26 -13.84 7.67 22.80 0.17 -13.67 16 5 C 0.11 5.57 5.57 -21.29 -0.12 5.45 16 6 C -0.48 -24.56 9.04 23.39 0.21 -24.35 16 7 H 0.09 4.17 7.91 -2.91 -0.02 4.15 16 8 C 0.04 1.77 5.13 85.23 0.44 2.21 16 9 N -0.82 -40.48 10.96 21.82 0.24 -40.24 16 10 Si 0.98 35.88 29.59 68.60 2.03 37.91 16 11 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 12 H -0.27 -9.35 7.11 99.48 0.71 -8.65 16 13 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 14 C -0.23 -11.04 9.34 22.49 0.21 -10.83 16 15 C -0.08 -3.64 5.00 -20.06 -0.10 -3.74 16 16 C 0.14 4.96 4.04 29.85 0.12 5.08 16 17 H 0.11 3.22 8.03 -2.39 -0.02 3.20 16 18 C -0.16 -4.95 9.63 71.98 0.69 -4.25 16 19 F -0.21 -7.86 12.37 44.97 0.56 -7.31 16 20 C -0.07 -3.19 5.69 22.87 0.13 -3.06 16 21 O -0.33 -15.17 9.14 -76.77 -0.70 -15.87 16 22 C 0.03 1.02 10.23 113.37 1.16 2.18 16 23 H 0.04 1.65 7.65 -2.39 -0.02 1.63 16 24 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 25 H 0.04 1.74 7.67 -2.39 -0.02 1.72 16 26 H 0.13 6.63 4.40 -2.91 -0.01 6.62 16 27 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 28 H 0.12 5.01 8.05 -2.91 -0.02 4.99 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 2.07 5.75 -2.38 -0.01 2.06 16 33 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -60.97 288.12 6.60 -54.37 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.11 Total: 24.38 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 4.18 Total: -36.79 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.24 Total: -40.24 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.52 Total: -32.32 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 0.56 Total: -7.31 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal Total: -60.97 6.60 -54.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216241957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.034 kcal (2) G-P(sol) polarization free energy of solvation -60.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds