Wall clock time and date at job start Mon Mar 30 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35664 * 116.99932 * 2 1 4 4 C 1.38158 * 120.22541 * 359.97438 * 3 2 1 5 5 C 1.38960 * 120.00236 * 180.02562 * 4 3 2 6 6 O 1.35690 * 119.77653 * 180.02562 * 5 4 3 7 7 C 1.42898 * 116.99935 * 359.97438 * 6 5 4 8 8 C 1.39483 * 120.45050 * 359.72932 * 5 4 3 9 9 C 1.50706 * 119.77209 * 180.30548 * 8 5 4 10 10 H 1.08999 * 109.46798 * 35.24778 * 9 8 5 11 11 C 1.53005 * 109.46579 * 275.24880 * 9 8 5 12 12 F 1.39895 * 109.47185 * 155.25057 * 9 8 5 13 13 C 1.36305 * 120.45802 * 0.55050 * 8 5 4 14 14 C 1.40810 * 119.98854 * 359.45514 * 13 8 5 15 15 C 1.41023 * 120.22662 * 180.25454 * 14 13 8 16 16 H 1.08008 * 120.00304 * 150.00120 * 15 14 13 17 17 C 1.39872 * 120.00120 * 329.99997 * 15 14 13 18 18 N 1.30924 * 120.00367 * 161.76124 * 17 15 14 19 19 Si 1.86803 * 119.99776 * 341.75641 * 17 15 14 20 20 H 1.48504 * 109.46826 * 95.40844 * 19 17 15 21 21 H 1.48494 * 109.47486 * 215.40914 * 19 17 15 22 22 H 1.48505 * 109.47141 * 335.41447 * 19 17 15 23 23 H 1.09002 * 109.47371 * 59.99499 * 1 2 3 24 24 H 1.08995 * 109.46784 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46376 * 299.99528 * 1 2 3 26 26 H 1.07998 * 119.99773 * 0.04160 * 4 3 2 27 27 H 1.09001 * 109.47221 * 180.02562 * 7 6 5 28 28 H 1.09005 * 109.46747 * 300.00532 * 7 6 5 29 29 H 1.09004 * 109.47127 * 59.99799 * 7 6 5 30 30 H 1.08994 * 109.46965 * 60.00190 * 11 9 8 31 31 H 1.08999 * 109.46708 * 180.02562 * 11 9 8 32 32 H 1.09004 * 109.47047 * 299.99582 * 11 9 8 33 33 H 1.08007 * 120.00599 * 179.72554 * 13 8 5 34 34 H 0.96999 * 120.00212 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2970 2.3704 -0.0005 5 6 1.9327 3.6061 -0.0011 6 8 1.1936 4.7441 -0.0011 7 6 -0.2275 4.5947 -0.0011 8 6 3.3253 3.6847 0.0046 9 6 3.9987 5.0329 0.0109 10 1 3.4079 5.7313 0.6036 11 6 4.1142 5.5519 -1.4238 12 9 5.2765 4.9133 0.5678 13 6 4.0813 2.5505 -0.0005 14 6 3.4569 1.2884 -0.0001 15 6 4.2343 0.1118 0.0001 16 1 3.8562 -0.7853 0.4680 17 6 5.4949 0.1063 -0.6059 18 7 6.3581 -0.8334 -0.3128 19 14 5.9468 1.4398 -1.8335 20 1 6.6874 2.5228 -1.1377 21 1 6.8026 0.8613 -2.9003 22 1 4.7097 1.9957 -2.4383 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 0.2183 2.3181 -0.0003 27 1 -0.6963 5.5787 -0.0015 28 1 -0.5351 4.0456 -0.8911 29 1 -0.5351 4.0456 0.8889 30 1 3.1186 5.6450 -1.8576 31 1 4.6017 6.5268 -1.4193 32 1 4.7050 4.8534 -2.0164 33 1 5.1592 2.6199 -0.0006 34 1 7.2325 -0.8370 -0.7328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216242121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:31 Heat of formation + Delta-G solvation = -109.008020 kcal Electronic energy + Delta-G solvation = -19451.999635 eV Core-core repulsion = 16264.927665 eV Total energy + Delta-G solvation = -3187.071970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.04390 -39.51569 -37.92687 -36.03298 -33.56080 -32.07668 -29.98012 -28.53644 -27.36321 -26.58905 -24.37123 -22.88309 -21.27739 -19.84475 -17.94696 -17.49374 -16.31817 -15.63614 -15.39367 -15.19831 -14.95763 -14.76173 -14.39677 -14.09682 -13.78888 -13.60733 -12.95009 -12.46101 -12.36418 -12.07381 -11.83399 -11.73511 -11.42938 -11.17804 -11.00702 -10.76975 -10.68396 -10.56461 -10.33249 -9.90624 -9.60869 -9.51536 -9.05057 -7.68162 -7.09048 -6.87573 -4.27670 2.39376 2.46864 3.18565 3.23138 3.34115 4.01107 4.03694 4.22838 4.37102 5.17828 5.20950 5.27114 5.41092 5.47095 5.55904 5.57815 5.59708 5.62382 5.68501 5.76455 5.88476 6.05084 6.22066 6.29027 6.44166 6.52842 6.62727 7.09152 7.20189 7.24200 7.56664 7.75009 8.12467 8.20008 8.42932 8.76370 8.82457 10.15097 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.011982 C = 0.007450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.221966 B = 2336.195032 C = 3757.393105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.302 6.302 3 C 0.065 3.935 4 C -0.245 4.245 5 C 0.037 3.963 6 O -0.326 6.326 7 C 0.037 3.963 8 C -0.127 4.127 9 C 0.143 3.857 10 H 0.085 0.915 11 C -0.169 4.169 12 F -0.215 7.215 13 C -0.174 4.174 14 C 0.059 3.941 15 C -0.429 4.429 16 H 0.095 0.905 17 C 0.084 3.916 18 N -0.808 5.808 19 Si 0.897 3.103 20 H -0.263 1.263 21 H -0.289 1.289 22 H -0.245 1.245 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.121 0.879 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 8.159 -1.767 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.215 6.215 3 C 0.020 3.980 4 C -0.264 4.264 5 C -0.007 4.007 6 O -0.241 6.241 7 C -0.059 4.059 8 C -0.129 4.129 9 C 0.107 3.893 10 H 0.103 0.897 11 C -0.226 4.226 12 F -0.196 7.196 13 C -0.194 4.194 14 C 0.055 3.945 15 C -0.457 4.457 16 H 0.113 0.887 17 C -0.135 4.135 18 N -0.433 5.433 19 Si 0.723 3.277 20 H -0.188 1.188 21 H -0.217 1.217 22 H -0.168 1.168 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.139 0.861 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.335 7.976 -1.762 11.670 hybrid contribution -0.210 0.344 -0.486 0.631 sum -8.545 8.319 -2.248 12.136 Atomic orbital electron populations 1.22816 0.81289 1.02347 0.99960 1.86056 1.18561 1.27519 1.89399 1.18942 0.91928 0.82528 1.04597 1.20759 0.98325 0.92157 1.15178 1.17792 0.89199 0.83884 1.09854 1.85830 1.17388 1.30063 1.90861 1.22757 0.80592 1.02092 1.00433 1.18699 0.90277 0.94503 1.09374 1.20060 0.79051 0.95773 0.94384 0.89704 1.22298 1.03340 1.00950 0.96034 1.92773 1.42378 1.97310 1.87174 1.20242 0.98658 0.90554 1.09901 1.17081 0.88311 0.93436 0.95630 1.19203 0.98235 0.97702 1.30577 0.88658 1.26095 0.94841 0.96101 0.96415 1.69723 1.05822 1.31969 1.35826 0.86511 0.80061 0.80749 0.80375 1.18840 1.21653 1.16786 0.93993 0.89463 0.94028 0.86893 0.89601 0.93798 0.93778 0.90605 0.92147 0.91896 0.86134 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 16 2 O -0.30 -6.70 9.84 -18.69 -0.18 -6.89 16 3 C 0.07 1.55 6.72 -38.40 -0.26 1.29 16 4 C -0.24 -5.08 8.01 -39.34 -0.31 -5.40 16 5 C 0.04 0.77 6.68 -38.85 -0.26 0.51 16 6 O -0.33 -5.83 9.60 -18.77 -0.18 -6.01 16 7 C 0.04 0.49 9.80 101.05 0.99 1.48 16 8 C -0.13 -2.84 5.07 -104.85 -0.53 -3.37 16 9 C 0.14 2.77 3.89 -27.88 -0.11 2.66 16 10 H 0.09 1.49 7.68 -51.93 -0.40 1.09 16 11 C -0.17 -2.81 9.63 37.16 0.36 -2.45 16 12 F -0.22 -4.54 16.04 2.25 0.04 -4.51 16 13 C -0.17 -4.32 6.45 -39.31 -0.25 -4.58 16 14 C 0.06 1.53 5.11 -106.66 -0.55 0.98 16 15 C -0.43 -11.97 9.18 -37.92 -0.35 -12.31 16 16 H 0.10 2.83 7.90 -52.48 -0.41 2.41 16 17 C 0.08 2.26 5.40 -17.33 -0.09 2.17 16 18 N -0.81 -22.13 13.93 55.54 0.77 -21.35 16 19 Si 0.90 21.29 24.52 -169.99 -4.17 17.12 16 20 H -0.26 -6.15 6.71 56.52 0.38 -5.77 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.24 -5.87 6.87 56.52 0.39 -5.48 16 23 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 24 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 26 H 0.11 1.97 4.50 -52.49 -0.24 1.74 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.55 7.65 -51.93 -0.40 0.16 16 29 H 0.04 0.56 7.64 -51.93 -0.40 0.16 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.12 3.08 4.11 -52.48 -0.22 2.86 16 34 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 LS Contribution 284.17 15.07 4.28 4.28 Total: -1.00 -29.77 284.17 -3.95 -33.72 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.14 Total: 1.15 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -0.37 Total: -17.52 kcal Atomic # 7 Polarization: -22.13 SS G_CDS: 0.77 Total: -21.35 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.36 Total: -12.89 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.04 Total: -4.51 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.17 Total: 17.12 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.77 -3.95 -33.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216242121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.291 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds