Wall clock time and date at job start Mon Mar 30 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35664 * 116.99932 * 2 1 4 4 C 1.38158 * 120.22541 * 359.97438 * 3 2 1 5 5 C 1.38960 * 120.00236 * 180.02562 * 4 3 2 6 6 O 1.35690 * 119.77653 * 180.02562 * 5 4 3 7 7 C 1.42898 * 116.99935 * 359.97438 * 6 5 4 8 8 C 1.39483 * 120.45050 * 359.72932 * 5 4 3 9 9 C 1.50706 * 119.77209 * 180.30548 * 8 5 4 10 10 H 1.08999 * 109.46798 * 35.24778 * 9 8 5 11 11 C 1.53005 * 109.46579 * 275.24880 * 9 8 5 12 12 F 1.39895 * 109.47185 * 155.25057 * 9 8 5 13 13 C 1.36305 * 120.45802 * 0.55050 * 8 5 4 14 14 C 1.40810 * 119.98854 * 359.45514 * 13 8 5 15 15 C 1.41023 * 120.22662 * 180.25454 * 14 13 8 16 16 H 1.08008 * 120.00304 * 150.00120 * 15 14 13 17 17 C 1.39872 * 120.00120 * 329.99997 * 15 14 13 18 18 N 1.30924 * 120.00367 * 161.76124 * 17 15 14 19 19 Si 1.86803 * 119.99776 * 341.75641 * 17 15 14 20 20 H 1.48504 * 109.46826 * 95.40844 * 19 17 15 21 21 H 1.48494 * 109.47486 * 215.40914 * 19 17 15 22 22 H 1.48505 * 109.47141 * 335.41447 * 19 17 15 23 23 H 1.09002 * 109.47371 * 59.99499 * 1 2 3 24 24 H 1.08995 * 109.46784 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46376 * 299.99528 * 1 2 3 26 26 H 1.07998 * 119.99773 * 0.04160 * 4 3 2 27 27 H 1.09001 * 109.47221 * 180.02562 * 7 6 5 28 28 H 1.09005 * 109.46747 * 300.00532 * 7 6 5 29 29 H 1.09004 * 109.47127 * 59.99799 * 7 6 5 30 30 H 1.08994 * 109.46965 * 60.00190 * 11 9 8 31 31 H 1.08999 * 109.46708 * 180.02562 * 11 9 8 32 32 H 1.09004 * 109.47047 * 299.99582 * 11 9 8 33 33 H 1.08007 * 120.00599 * 179.72554 * 13 8 5 34 34 H 0.96999 * 120.00212 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2970 2.3704 -0.0005 5 6 1.9327 3.6061 -0.0011 6 8 1.1936 4.7441 -0.0011 7 6 -0.2275 4.5947 -0.0011 8 6 3.3253 3.6847 0.0046 9 6 3.9987 5.0329 0.0109 10 1 3.4079 5.7313 0.6036 11 6 4.1142 5.5519 -1.4238 12 9 5.2765 4.9133 0.5678 13 6 4.0813 2.5505 -0.0005 14 6 3.4569 1.2884 -0.0001 15 6 4.2343 0.1118 0.0001 16 1 3.8562 -0.7853 0.4680 17 6 5.4949 0.1063 -0.6059 18 7 6.3581 -0.8334 -0.3128 19 14 5.9468 1.4398 -1.8335 20 1 6.6874 2.5228 -1.1377 21 1 6.8026 0.8613 -2.9003 22 1 4.7097 1.9957 -2.4383 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 0.2183 2.3181 -0.0003 27 1 -0.6963 5.5787 -0.0015 28 1 -0.5351 4.0456 -0.8911 29 1 -0.5351 4.0456 0.8889 30 1 3.1186 5.6450 -1.8576 31 1 4.6017 6.5268 -1.4193 32 1 4.7050 4.8534 -2.0164 33 1 5.1592 2.6199 -0.0006 34 1 7.2325 -0.8370 -0.7328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216242121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:31 Heat of formation + Delta-G solvation = -128.646960 kcal Electronic energy + Delta-G solvation = -19452.851243 eV Core-core repulsion = 16264.927665 eV Total energy + Delta-G solvation = -3187.923579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.62049 -41.17796 -39.48475 -37.71540 -35.41402 -33.68398 -31.75873 -30.08102 -28.62507 -28.05517 -26.08615 -24.42014 -23.01008 -21.52190 -19.57615 -19.32799 -17.92095 -17.25208 -17.08163 -16.67597 -16.54492 -16.17442 -15.91276 -15.67605 -15.34526 -15.27766 -14.78033 -14.03695 -13.82422 -13.73749 -13.31441 -13.13513 -12.89914 -12.74647 -12.56836 -12.39687 -12.27770 -12.00094 -11.97237 -11.70495 -11.34015 -11.22318 -10.88477 -9.41775 -8.87926 -8.84681 -6.28892 0.59616 0.66851 1.25815 1.33866 1.43895 2.11794 2.50274 2.60194 2.71637 3.31979 3.65279 3.81925 4.02541 4.14371 4.23385 4.31384 4.42078 4.43579 4.49041 4.60086 4.66014 4.70904 4.76555 4.79467 4.85933 4.96844 5.16057 5.23062 5.43512 5.45280 5.75929 5.95044 6.22754 6.45202 6.58787 6.81692 7.02346 8.24819 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.011982 C = 0.007450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.221966 B = 2336.195032 C = 3757.393105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.065 3.935 4 C -0.246 4.246 5 C 0.073 3.927 6 O -0.326 6.326 7 C 0.022 3.978 8 C -0.153 4.153 9 C 0.139 3.861 10 H 0.108 0.892 11 C -0.164 4.164 12 F -0.229 7.229 13 C -0.175 4.175 14 C 0.023 3.977 15 C -0.466 4.466 16 H 0.054 0.946 17 C 0.046 3.954 18 N -0.856 5.856 19 Si 0.949 3.051 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.250 1.250 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.059 0.941 26 H 0.153 0.847 27 H 0.123 0.877 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.106 0.894 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 11.287 -2.486 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.019 3.981 4 C -0.265 4.265 5 C 0.027 3.973 6 O -0.241 6.241 7 C -0.072 4.072 8 C -0.154 4.154 9 C 0.103 3.897 10 H 0.126 0.874 11 C -0.222 4.222 12 F -0.210 7.210 13 C -0.195 4.195 14 C 0.021 3.979 15 C -0.497 4.497 16 H 0.073 0.927 17 C -0.166 4.166 18 N -0.484 5.484 19 Si 0.773 3.227 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.174 1.174 23 H 0.079 0.921 24 H 0.130 0.870 25 H 0.077 0.923 26 H 0.170 0.830 27 H 0.141 0.859 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.124 0.876 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.205 11.114 -2.481 15.976 hybrid contribution 0.255 -0.432 -0.174 0.531 sum -10.950 10.682 -2.655 15.526 Atomic orbital electron populations 1.23229 0.77826 1.04798 1.01570 1.86029 1.22228 1.27330 1.89195 1.19115 0.91546 0.84098 1.03332 1.21099 1.00242 0.90956 1.14230 1.17957 0.89211 0.84991 1.05093 1.85860 1.20020 1.28284 1.89965 1.23218 0.77586 1.05021 1.01404 1.19051 0.91373 0.95255 1.09697 1.20333 0.78437 0.94462 0.96482 0.87389 1.22288 1.04186 1.01928 0.93752 1.92750 1.43400 1.97308 1.87560 1.20225 0.98360 0.91176 1.09709 1.17255 0.89904 0.93224 0.97559 1.19048 0.99810 0.97388 1.33421 0.92738 1.26678 0.94585 0.97907 0.97466 1.69759 1.06613 1.34102 1.37960 0.85721 0.79561 0.78630 0.78808 1.18673 1.20057 1.17380 0.92136 0.86965 0.92263 0.82979 0.85871 0.92660 0.92804 0.89380 0.89141 0.93488 0.87611 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.81 113.37 1.11 1.70 16 2 O -0.33 -14.79 9.84 -89.81 -0.88 -15.67 16 3 C 0.06 3.04 6.72 23.04 0.15 3.20 16 4 C -0.25 -9.45 8.01 22.42 0.18 -9.27 16 5 C 0.07 2.78 6.68 22.74 0.15 2.94 16 6 O -0.33 -9.97 9.60 -90.09 -0.86 -10.83 16 7 C 0.02 0.45 9.80 113.37 1.11 1.57 16 8 C -0.15 -6.52 5.07 -20.01 -0.10 -6.62 16 9 C 0.14 4.99 3.89 29.85 0.12 5.11 16 10 H 0.11 3.37 7.68 -2.39 -0.02 3.36 16 11 C -0.16 -4.91 9.63 71.98 0.69 -4.22 16 12 F -0.23 -9.36 16.04 44.97 0.72 -8.64 16 13 C -0.18 -8.77 6.45 22.45 0.14 -8.63 16 14 C 0.02 1.25 5.11 -21.18 -0.11 1.14 16 15 C -0.47 -27.82 9.18 23.35 0.21 -27.61 16 16 H 0.05 3.54 7.90 -2.91 -0.02 3.52 16 17 C 0.05 2.65 5.40 85.22 0.46 3.11 16 18 N -0.86 -49.89 13.93 21.82 0.30 -49.59 16 19 Si 0.95 45.56 24.52 68.60 1.68 47.24 16 20 H -0.26 -12.27 6.71 99.48 0.67 -11.60 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.25 -12.01 6.87 99.48 0.68 -11.33 16 23 H 0.06 1.51 7.66 -2.39 -0.02 1.50 16 24 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.06 1.49 7.66 -2.39 -0.02 1.47 16 26 H 0.15 4.54 4.50 -2.91 -0.01 4.53 16 27 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.05 7.65 -2.38 -0.02 1.04 16 29 H 0.05 1.04 7.64 -2.38 -0.02 1.02 16 30 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.11 5.54 4.11 -2.91 -0.01 5.53 16 34 H 0.29 15.28 8.30 -92.71 -0.77 14.51 16 Total: -1.00 -68.89 284.17 6.14 -62.76 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.05 Total: 12.33 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 4.13 Total: -37.60 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.30 Total: -49.59 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -1.75 Total: -26.50 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 0.72 Total: -8.64 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.68 Total: 47.24 kcal Total: -68.89 6.14 -62.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216242121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.892 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds