Wall clock time and date at job start Mon Mar 30 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36004 * 117.00274 * 2 1 4 4 C 1.38675 * 119.94511 * 275.20340 * 3 2 1 5 5 C 1.50698 * 119.74131 * 0.02562 * 4 3 2 6 6 C 1.39006 * 120.51584 * 179.97438 * 4 3 2 7 7 F 1.35093 * 119.80001 * 179.97438 * 6 4 3 8 8 C 1.37668 * 120.39572 * 359.72201 * 6 4 3 9 9 C 1.50704 * 120.05526 * 180.29530 * 8 6 4 10 10 C 1.40771 * 119.88111 * 0.53749 * 8 6 4 11 11 C 1.41175 * 120.24805 * 179.74345 * 10 8 6 12 12 H 1.07997 * 120.00347 * 47.30288 * 11 10 8 13 13 C 1.39917 * 119.99254 * 227.30935 * 11 10 8 14 14 N 1.30877 * 119.99503 * 197.09269 * 13 11 10 15 15 Si 1.86800 * 120.00518 * 17.36831 * 13 11 10 16 16 H 1.48500 * 109.46811 * 265.62544 * 15 13 11 17 17 H 1.48499 * 109.46736 * 25.62362 * 15 13 11 18 18 H 1.48501 * 109.47155 * 145.62641 * 15 13 11 19 19 C 1.38842 * 119.94800 * 95.18453 * 3 2 1 20 20 O 1.35764 * 120.19793 * 0.02562 * 19 3 2 21 21 C 1.42907 * 116.99859 * 264.67118 * 20 19 3 22 22 H 1.08999 * 109.46944 * 305.57556 * 1 2 3 23 23 H 1.09005 * 109.46698 * 65.57291 * 1 2 3 24 24 H 1.08992 * 109.47676 * 185.57171 * 1 2 3 25 25 H 1.09001 * 109.47555 * 89.99783 * 5 4 3 26 26 H 1.08996 * 109.46943 * 209.99523 * 5 4 3 27 27 H 1.09000 * 109.47350 * 329.99881 * 5 4 3 28 28 H 1.08994 * 109.47527 * 270.23972 * 9 8 6 29 29 H 1.09004 * 109.47211 * 30.24168 * 9 8 6 30 30 H 1.09001 * 109.46912 * 150.23758 * 9 8 6 31 31 H 0.97006 * 119.99791 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.46889 * 185.30721 * 21 20 19 33 33 H 1.09000 * 109.47116 * 305.31097 * 21 20 19 34 34 H 1.09000 * 109.47047 * 65.30646 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.2636 1.8780 -1.1967 5 6 1.8126 1.2541 -2.4922 6 6 2.8931 3.1173 -1.2104 7 9 3.0979 3.7533 -2.3845 8 6 3.3046 3.7027 -0.0343 9 6 3.9803 5.0495 -0.0575 10 6 3.0975 3.0386 1.1896 11 6 3.5211 3.6293 2.3998 12 1 3.2910 4.6643 2.6052 13 6 4.2393 2.8737 3.3331 14 7 4.3442 3.2892 4.5697 15 14 5.0550 1.2760 2.8123 16 1 4.1451 0.1386 3.1014 17 1 5.3453 1.3200 1.3566 18 1 6.3229 1.0992 3.5649 19 6 2.4580 1.7800 1.1981 20 8 2.2464 1.1293 2.3707 21 6 1.0714 1.4802 3.1045 22 1 -0.3633 0.5979 0.8359 23 1 -0.3633 0.4250 -0.9357 24 1 -0.3634 -1.0227 0.0998 25 1 0.7922 1.5687 -2.7112 26 1 2.4724 1.5742 -3.2986 27 1 1.8470 0.1683 -2.4039 28 1 5.0571 4.9141 -0.1581 29 1 3.6066 5.6290 -0.9017 30 1 3.7659 5.5796 0.8705 31 1 4.8418 2.7653 5.2169 32 1 1.0713 0.9581 4.0614 33 1 1.0589 2.5563 3.2776 34 1 0.1878 1.1937 2.5342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216242233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:19 Heat of formation + Delta-G solvation = -105.769194 kcal Electronic energy + Delta-G solvation = -19957.516649 eV Core-core repulsion = 16770.585125 eV Total energy + Delta-G solvation = -3186.931524 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.08600 -39.49112 -37.14917 -36.09621 -33.53463 -32.12086 -29.85245 -28.11596 -26.98995 -26.23351 -25.10307 -23.39657 -20.84088 -20.02672 -18.15479 -16.89419 -16.34055 -16.20105 -15.33982 -14.95770 -14.73034 -14.59469 -14.21155 -13.91019 -13.47798 -13.06864 -12.72039 -12.48440 -12.34118 -12.29866 -11.84516 -11.63956 -11.49632 -11.31387 -11.05037 -10.97335 -10.33987 -10.16340 -10.02880 -9.84556 -9.61605 -9.08279 -8.69543 -7.53660 -7.34553 -6.88605 -4.59894 2.00205 2.15621 3.23304 3.40824 3.43715 4.01077 4.18984 4.39382 4.80792 5.07022 5.38133 5.56427 5.61633 5.65547 5.77877 5.80147 6.06411 6.08945 6.14411 6.15268 6.22597 6.39554 6.45045 6.51649 6.52132 6.63597 6.87669 7.06852 7.09086 7.17274 7.48924 7.69683 7.99551 8.12771 8.34216 8.69266 8.81438 10.09311 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.012087 C = 0.008782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.660373 B = 2315.936729 C = 3187.667837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.331 6.331 3 C 0.129 3.871 4 C -0.242 4.242 5 C -0.085 4.085 6 C 0.126 3.874 7 F -0.153 7.153 8 C -0.190 4.190 9 C -0.085 4.085 10 C 0.100 3.900 11 C -0.452 4.452 12 H 0.097 0.903 13 C 0.107 3.893 14 N -0.809 5.809 15 Si 0.903 3.097 16 H -0.241 1.241 17 H -0.257 1.257 18 H -0.294 1.294 19 C -0.028 4.028 20 O -0.306 6.306 21 C 0.035 3.965 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.285 0.715 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 -2.852 -5.358 7.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.248 6.248 3 C 0.085 3.915 4 C -0.244 4.244 5 C -0.142 4.142 6 C 0.107 3.893 7 F -0.132 7.132 8 C -0.192 4.192 9 C -0.142 4.142 10 C 0.096 3.904 11 C -0.479 4.479 12 H 0.115 0.885 13 C -0.113 4.113 14 N -0.433 5.433 15 Si 0.729 3.271 16 H -0.165 1.165 17 H -0.181 1.181 18 H -0.221 1.221 19 C -0.073 4.073 20 O -0.223 6.223 21 C -0.060 4.060 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.819 -3.117 -5.032 7.633 hybrid contribution 0.031 -0.246 -0.266 0.364 sum -4.788 -3.363 -5.298 7.893 Atomic orbital electron populations 1.22897 0.80475 1.02080 1.00198 1.85986 1.18776 1.25667 1.94333 1.18258 0.96444 0.85587 0.91180 1.19277 1.13265 0.96499 0.95354 1.20279 0.99736 1.00242 0.93950 1.17008 1.00778 0.91303 0.80194 1.91339 1.93405 1.81659 1.46781 1.19987 1.07662 1.00677 0.90877 1.20355 0.99123 0.93215 1.01500 1.17565 0.90519 0.89498 0.92774 1.19075 1.31198 0.99806 0.97861 0.88506 1.25901 0.94073 0.98205 0.93131 1.69700 1.32147 1.38716 1.02775 0.86276 0.77449 0.82990 0.80404 1.16502 1.18086 1.22121 1.19068 1.07184 0.96886 0.84197 1.86225 1.41965 1.61942 1.32154 1.22801 0.86994 1.01067 0.95133 0.93919 0.94111 0.89780 0.93244 0.92606 0.91981 0.92518 0.93601 0.91074 0.90517 0.90751 0.92977 0.95677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.99 101.05 1.11 1.70 16 2 O -0.33 -6.74 9.24 -34.49 -0.32 -7.05 16 3 C 0.13 2.89 5.70 -39.20 -0.22 2.66 16 4 C -0.24 -5.13 5.91 -104.18 -0.62 -5.75 16 5 C -0.09 -1.48 9.06 36.00 0.33 -1.16 16 6 C 0.13 2.77 7.16 -39.51 -0.28 2.49 16 7 F -0.15 -3.13 15.62 2.25 0.04 -3.09 16 8 C -0.19 -4.35 5.94 -103.87 -0.62 -4.97 16 9 C -0.09 -1.71 9.43 36.01 0.34 -1.37 16 10 C 0.10 2.46 4.57 -106.71 -0.49 1.97 16 11 C -0.45 -11.58 7.86 -37.84 -0.30 -11.88 16 12 H 0.10 2.57 7.17 -52.49 -0.38 2.19 16 13 C 0.11 2.74 4.96 -17.33 -0.09 2.66 16 14 N -0.81 -21.01 13.93 55.55 0.77 -20.23 16 15 Si 0.90 21.89 24.80 -169.99 -4.22 17.67 16 16 H -0.24 -5.89 6.33 56.52 0.36 -5.53 16 17 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 C -0.03 -0.67 4.24 -38.24 -0.16 -0.84 16 20 O -0.31 -7.24 5.91 -33.73 -0.20 -7.44 16 21 C 0.03 0.69 11.00 101.05 1.11 1.80 16 22 H 0.04 0.66 6.19 -51.93 -0.32 0.33 16 23 H 0.04 0.57 7.73 -51.93 -0.40 0.17 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.92 7.62 -51.93 -0.40 0.53 16 27 H 0.06 1.04 7.50 -51.93 -0.39 0.65 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.83 7.63 -51.93 -0.40 0.43 16 30 H 0.07 1.43 6.60 -51.93 -0.34 1.09 16 31 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.05 1.09 7.83 -51.93 -0.41 0.68 16 34 H 0.02 0.44 6.19 -51.93 -0.32 0.12 16 LS Contribution 282.21 15.07 4.25 4.25 Total: -1.00 -27.66 282.21 -3.78 -31.44 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.22 Total: -2.84 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 0.12 Total: -12.69 kcal Atomic # 7 Polarization: -21.01 SS G_CDS: 0.77 Total: -20.23 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.52 Total: -14.50 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.22 Total: 17.67 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.66 -3.78 -31.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216242233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.333 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds