Wall clock time and date at job start Mon Mar 30 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36004 * 117.00274 * 2 1 4 4 C 1.38675 * 119.94511 * 275.20340 * 3 2 1 5 5 C 1.50698 * 119.74131 * 0.02562 * 4 3 2 6 6 C 1.39006 * 120.51584 * 179.97438 * 4 3 2 7 7 F 1.35093 * 119.80001 * 179.97438 * 6 4 3 8 8 C 1.37668 * 120.39572 * 359.72201 * 6 4 3 9 9 C 1.50704 * 120.05526 * 180.29530 * 8 6 4 10 10 C 1.40771 * 119.88111 * 0.53749 * 8 6 4 11 11 C 1.41175 * 120.24805 * 179.74345 * 10 8 6 12 12 H 1.07997 * 120.00347 * 47.30288 * 11 10 8 13 13 C 1.39917 * 119.99254 * 227.30935 * 11 10 8 14 14 N 1.30877 * 119.99503 * 197.09269 * 13 11 10 15 15 Si 1.86800 * 120.00518 * 17.36831 * 13 11 10 16 16 H 1.48500 * 109.46811 * 265.62544 * 15 13 11 17 17 H 1.48499 * 109.46736 * 25.62362 * 15 13 11 18 18 H 1.48501 * 109.47155 * 145.62641 * 15 13 11 19 19 C 1.38842 * 119.94800 * 95.18453 * 3 2 1 20 20 O 1.35764 * 120.19793 * 0.02562 * 19 3 2 21 21 C 1.42907 * 116.99859 * 264.67118 * 20 19 3 22 22 H 1.08999 * 109.46944 * 305.57556 * 1 2 3 23 23 H 1.09005 * 109.46698 * 65.57291 * 1 2 3 24 24 H 1.08992 * 109.47676 * 185.57171 * 1 2 3 25 25 H 1.09001 * 109.47555 * 89.99783 * 5 4 3 26 26 H 1.08996 * 109.46943 * 209.99523 * 5 4 3 27 27 H 1.09000 * 109.47350 * 329.99881 * 5 4 3 28 28 H 1.08994 * 109.47527 * 270.23972 * 9 8 6 29 29 H 1.09004 * 109.47211 * 30.24168 * 9 8 6 30 30 H 1.09001 * 109.46912 * 150.23758 * 9 8 6 31 31 H 0.97006 * 119.99791 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.46889 * 185.30721 * 21 20 19 33 33 H 1.09000 * 109.47116 * 305.31097 * 21 20 19 34 34 H 1.09000 * 109.47047 * 65.30646 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.2636 1.8780 -1.1967 5 6 1.8126 1.2541 -2.4922 6 6 2.8931 3.1173 -1.2104 7 9 3.0979 3.7533 -2.3845 8 6 3.3046 3.7027 -0.0343 9 6 3.9803 5.0495 -0.0575 10 6 3.0975 3.0386 1.1896 11 6 3.5211 3.6293 2.3998 12 1 3.2910 4.6643 2.6052 13 6 4.2393 2.8737 3.3331 14 7 4.3442 3.2892 4.5697 15 14 5.0550 1.2760 2.8123 16 1 4.1451 0.1386 3.1014 17 1 5.3453 1.3200 1.3566 18 1 6.3229 1.0992 3.5649 19 6 2.4580 1.7800 1.1981 20 8 2.2464 1.1293 2.3707 21 6 1.0714 1.4802 3.1045 22 1 -0.3633 0.5979 0.8359 23 1 -0.3633 0.4250 -0.9357 24 1 -0.3634 -1.0227 0.0998 25 1 0.7922 1.5687 -2.7112 26 1 2.4724 1.5742 -3.2986 27 1 1.8470 0.1683 -2.4039 28 1 5.0571 4.9141 -0.1581 29 1 3.6066 5.6290 -0.9017 30 1 3.7659 5.5796 0.8705 31 1 4.8418 2.7653 5.2169 32 1 1.0713 0.9581 4.0614 33 1 1.0589 2.5563 3.2776 34 1 0.1878 1.1937 2.5342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216242233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:19 Heat of formation + Delta-G solvation = -121.602736 kcal Electronic energy + Delta-G solvation = -19958.203243 eV Core-core repulsion = 16770.585125 eV Total energy + Delta-G solvation = -3187.618118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.76227 -41.18254 -38.77907 -37.82332 -35.35785 -33.80966 -31.55102 -29.77166 -28.46246 -27.78354 -26.71715 -25.12201 -22.57957 -21.71782 -19.95510 -18.59447 -18.07552 -17.90272 -17.01006 -16.68848 -16.39051 -16.24719 -15.81054 -15.41204 -15.09140 -14.93942 -14.17374 -14.13801 -13.99344 -13.84606 -13.55014 -13.14713 -12.98864 -12.89010 -12.81942 -12.67768 -12.12280 -11.89092 -11.80972 -11.56456 -11.11973 -10.97947 -10.41124 -9.28596 -9.09098 -8.79753 -6.52304 0.26493 0.38588 1.30884 1.46870 1.47903 2.25585 2.30069 2.76842 3.00138 3.29058 3.67418 4.05702 4.19287 4.27812 4.45288 4.48831 4.54421 4.61042 4.66306 4.71316 4.76970 4.81383 4.85435 4.90953 4.99527 5.07022 5.22105 5.35323 5.40889 5.41418 5.71678 5.96208 6.19488 6.37342 6.50916 6.81797 7.05198 8.23826 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.012087 C = 0.008782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.660373 B = 2315.936729 C = 3187.667837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.344 6.344 3 C 0.122 3.878 4 C -0.229 4.229 5 C -0.084 4.084 6 C 0.118 3.882 7 F -0.142 7.142 8 C -0.200 4.200 9 C -0.082 4.082 10 C 0.081 3.919 11 C -0.471 4.471 12 H 0.074 0.926 13 C 0.088 3.912 14 N -0.843 5.843 15 Si 0.938 3.062 16 H -0.245 1.245 17 H -0.277 1.277 18 H -0.282 1.282 19 C -0.036 4.036 20 O -0.326 6.326 21 C 0.035 3.965 22 H 0.040 0.960 23 H 0.057 0.943 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.290 0.710 32 H 0.092 0.908 33 H 0.033 0.967 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 -4.084 -7.263 10.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.261 6.261 3 C 0.077 3.923 4 C -0.231 4.231 5 C -0.140 4.140 6 C 0.098 3.902 7 F -0.121 7.121 8 C -0.202 4.202 9 C -0.139 4.139 10 C 0.078 3.922 11 C -0.501 4.501 12 H 0.092 0.908 13 C -0.128 4.128 14 N -0.470 5.470 15 Si 0.764 3.236 16 H -0.170 1.170 17 H -0.202 1.202 18 H -0.208 1.208 19 C -0.081 4.081 20 O -0.243 6.243 21 C -0.059 4.059 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.134 0.866 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.052 0.948 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.968 -4.352 -6.941 10.136 hybrid contribution 0.214 0.064 0.101 0.245 sum -5.753 -4.288 -6.840 9.914 Atomic orbital electron populations 1.23215 0.77675 1.04393 1.01017 1.85947 1.21394 1.24398 1.94372 1.18323 0.96815 0.86253 0.90869 1.19785 1.10753 0.95771 0.96797 1.20378 1.01191 1.00575 0.91905 1.17059 1.01060 0.91764 0.80287 1.91363 1.93320 1.81506 1.45917 1.20336 1.07395 1.01534 0.90928 1.20363 0.99311 0.92216 1.02008 1.17717 0.91073 0.90420 0.92981 1.18901 1.33193 0.98905 0.99072 0.90801 1.26153 0.94256 0.99250 0.93153 1.69709 1.34119 1.39900 1.03264 0.85790 0.77414 0.81613 0.78829 1.17013 1.20200 1.20845 1.19334 1.07045 0.96661 0.85074 1.86132 1.43683 1.62049 1.32425 1.22923 0.86740 1.00222 0.96034 0.94163 0.92434 0.86571 0.90843 0.91596 0.91059 0.91969 0.91496 0.91856 0.89991 0.88930 0.94840 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.99 113.37 1.25 2.07 16 2 O -0.34 -13.00 9.24 -79.51 -0.73 -13.73 16 3 C 0.12 5.18 5.70 22.52 0.13 5.31 16 4 C -0.23 -9.10 5.91 -19.58 -0.12 -9.21 16 5 C -0.08 -2.57 9.06 71.24 0.65 -1.93 16 6 C 0.12 4.92 7.16 22.32 0.16 5.08 16 7 F -0.14 -5.42 15.62 44.97 0.70 -4.71 16 8 C -0.20 -9.04 5.94 -19.38 -0.12 -9.15 16 9 C -0.08 -3.27 9.43 71.24 0.67 -2.60 16 10 C 0.08 4.02 4.57 -21.22 -0.10 3.92 16 11 C -0.47 -24.92 7.86 23.40 0.18 -24.74 16 12 H 0.07 4.13 7.17 -2.91 -0.02 4.11 16 13 C 0.09 4.62 4.96 85.24 0.42 5.05 16 14 N -0.84 -44.94 13.93 21.82 0.30 -44.64 16 15 Si 0.94 45.43 24.80 68.60 1.70 47.13 16 16 H -0.25 -11.92 6.33 99.48 0.63 -11.29 16 17 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 C -0.04 -1.70 4.24 23.14 0.10 -1.61 16 20 O -0.33 -15.23 5.91 -76.82 -0.45 -15.69 16 21 C 0.03 1.36 11.00 113.37 1.25 2.60 16 22 H 0.04 1.11 6.19 -2.39 -0.01 1.09 16 23 H 0.06 1.37 7.73 -2.38 -0.02 1.35 16 24 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 1.91 7.62 -2.39 -0.02 1.89 16 27 H 0.07 2.08 7.50 -2.39 -0.02 2.07 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 2.32 7.63 -2.38 -0.02 2.30 16 30 H 0.06 2.59 6.60 -2.39 -0.02 2.57 16 31 H 0.29 14.22 8.30 -92.70 -0.77 13.45 16 32 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.03 1.41 7.83 -2.39 -0.02 1.39 16 34 H 0.05 1.67 6.19 -2.39 -0.01 1.65 16 Total: -1.00 -59.00 282.21 7.04 -51.97 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.04 Total: 4.87 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 4.48 Total: -25.20 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.30 Total: -44.64 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -1.19 Total: -29.42 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.70 Total: -4.71 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.70 Total: 47.13 kcal Total: -59.00 7.04 -51.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216242233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.634 kcal (2) G-P(sol) polarization free energy of solvation -59.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds