Wall clock time and date at job start Mon Mar 30 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36010 * 117.00145 * 2 1 4 4 C 1.38661 * 119.94274 * 0.02562 * 3 2 1 5 5 C 1.39016 * 120.50946 * 179.97438 * 4 3 2 6 6 F 1.35104 * 119.79373 * 180.02562 * 5 4 3 7 7 C 1.37658 * 120.40256 * 359.97438 * 5 4 3 8 8 C 1.40771 * 119.88074 * 0.02562 * 7 5 4 9 9 C 1.41171 * 120.25064 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99870 * 205.79929 * 9 8 7 11 11 C 1.39910 * 120.00193 * 25.79985 * 9 8 7 12 12 N 1.30879 * 120.00192 * 26.18339 * 11 9 8 13 13 Si 1.86801 * 120.00231 * 206.18156 * 11 9 8 14 14 H 1.48503 * 109.47413 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47254 * 300.00203 * 13 11 9 16 16 H 1.48499 * 109.46841 * 60.00326 * 13 11 9 17 17 C 1.38847 * 119.94562 * 180.29982 * 3 2 1 18 18 O 1.35766 * 120.20455 * 359.97438 * 17 3 2 19 19 C 1.42900 * 117.00318 * 270.30376 * 18 17 3 20 20 C 1.53002 * 109.47319 * 149.99883 * 19 18 17 21 21 C 1.53001 * 109.46642 * 269.99915 * 19 18 17 22 22 H 1.08996 * 109.46806 * 299.99731 * 1 2 3 23 23 H 1.08995 * 109.47039 * 59.99896 * 1 2 3 24 24 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.74934 * 0.02562 * 4 3 2 26 26 H 1.08005 * 120.06215 * 180.02562 * 7 5 4 27 27 H 0.97002 * 119.99418 * 5.91160 * 12 11 9 28 28 H 1.09000 * 109.47058 * 29.99097 * 19 18 17 29 29 H 1.08997 * 109.46991 * 59.99817 * 20 19 18 30 30 H 1.08994 * 109.46927 * 179.97438 * 20 19 18 31 31 H 1.08999 * 109.46887 * 299.99799 * 20 19 18 32 32 H 1.08997 * 109.46982 * 180.02562 * 21 19 18 33 33 H 1.09004 * 109.47182 * 299.99521 * 21 19 18 34 34 H 1.09001 * 109.47553 * 59.99512 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2901 2.3740 0.0005 5 6 1.9090 3.6188 0.0011 6 9 1.1580 4.7419 0.0021 7 6 3.2823 3.7141 0.0016 8 6 4.0664 2.5449 0.0011 9 6 5.4753 2.6335 0.0011 10 1 6.0671 1.8271 -0.4064 11 6 6.1051 3.7659 0.5289 12 7 5.5055 4.4798 1.4475 13 14 7.8018 4.2590 -0.0774 14 1 8.2446 5.4851 0.6338 15 1 8.7618 3.1579 0.1886 16 1 7.7473 4.5265 -1.5371 17 6 3.4331 1.2832 -0.0063 18 8 4.1755 0.1465 -0.0119 19 6 4.5305 -0.4029 1.2586 20 6 4.6618 -1.9225 1.1385 21 6 5.8650 0.1898 1.7155 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.2120 2.3117 0.0014 26 1 3.7573 4.6840 0.0025 27 1 4.6642 4.1776 1.8241 28 1 3.7571 -0.1615 1.9877 29 1 5.4352 -2.1639 0.4093 30 1 4.9331 -2.3414 2.1074 31 1 3.7111 -2.3447 0.8129 32 1 6.1361 -0.2295 2.6843 33 1 6.6385 -0.0516 0.9863 34 1 5.7715 1.2725 1.8010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216242297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:39 Heat of formation + Delta-G solvation = -121.862194 kcal Electronic energy + Delta-G solvation = -19502.841794 eV Core-core repulsion = 16315.212425 eV Total energy + Delta-G solvation = -3187.629369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.91915 -39.31003 -37.50139 -36.05047 -33.70732 -32.05888 -29.30019 -28.33896 -26.87240 -26.35323 -25.00528 -21.60092 -21.23051 -20.23629 -18.49706 -16.84009 -16.60917 -16.16499 -15.21564 -14.95404 -14.47131 -14.27720 -14.21155 -13.91492 -13.74388 -13.21854 -13.00768 -12.66411 -11.97549 -11.81835 -11.61424 -11.58507 -11.46379 -11.12618 -10.87699 -10.79195 -10.54778 -10.50392 -10.05722 -9.91075 -9.77501 -9.14959 -8.68269 -7.76591 -7.50410 -7.02736 -4.67335 2.34186 2.54849 3.08062 3.15559 3.29046 3.85815 4.01428 4.20796 4.71924 5.21162 5.39721 5.53524 5.56234 5.64089 5.74837 5.77260 5.93790 6.04491 6.12654 6.28552 6.36278 6.39358 6.45929 6.53940 6.79023 6.87798 7.12560 7.16735 7.30446 7.44929 7.56815 7.69817 7.87370 8.16177 8.32768 8.58328 9.00040 9.80206 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016764 B = 0.010465 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.802073 B = 2675.003969 C = 4089.195342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.314 6.314 3 C 0.168 3.832 4 C -0.367 4.367 5 C 0.154 3.846 6 F -0.161 7.161 7 C -0.271 4.271 8 C 0.123 3.877 9 C -0.474 4.474 10 H 0.094 0.906 11 C 0.036 3.964 12 N -0.775 5.775 13 Si 1.064 2.936 14 H -0.272 1.272 15 H -0.272 1.272 16 H -0.271 1.271 17 C -0.066 4.066 18 O -0.303 6.303 19 C 0.085 3.915 20 C -0.144 4.144 21 C -0.175 4.175 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.302 0.698 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 -5.554 0.467 5.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.228 6.228 3 C 0.123 3.877 4 C -0.388 4.388 5 C 0.135 3.865 6 F -0.140 7.140 7 C -0.292 4.292 8 C 0.118 3.882 9 C -0.501 4.501 10 H 0.112 0.888 11 C -0.188 4.188 12 N -0.397 5.397 13 Si 0.886 3.114 14 H -0.197 1.197 15 H -0.197 1.197 16 H -0.196 1.196 17 C -0.112 4.112 18 O -0.220 6.220 19 C 0.029 3.971 20 C -0.201 4.201 21 C -0.232 4.232 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.106 0.894 25 H 0.130 0.870 26 H 0.139 0.861 27 H 0.116 0.884 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.513 -4.612 0.520 4.670 hybrid contribution -1.884 -0.681 0.141 2.008 sum -2.397 -5.293 0.661 5.849 Atomic orbital electron populations 1.22865 0.80361 1.02319 1.00890 1.86109 1.19791 1.27751 1.89115 1.18857 0.91076 0.82888 0.94920 1.20078 0.98432 0.90820 1.29453 1.17238 0.88767 0.80694 0.99843 1.91358 1.77133 1.51352 1.94157 1.20938 0.90649 0.99531 1.18042 1.17355 0.93631 0.88715 0.88465 1.20585 0.91394 1.04839 1.33245 0.88840 1.27217 1.06265 0.92141 0.93216 1.70484 1.17075 1.36537 1.15595 0.83643 0.72754 0.77530 0.77454 1.19671 1.19672 1.19619 1.17731 0.84763 0.86539 1.22184 1.86073 1.70521 1.38591 1.26795 1.22160 0.95652 0.92472 0.86846 1.21818 1.02061 0.95045 1.01165 1.22503 0.97533 1.03956 0.99220 0.93427 0.93302 0.89436 0.87010 0.86133 0.88428 0.93632 0.92402 0.92306 0.92505 0.93954 0.92705 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.47 16 2 O -0.31 -6.53 10.27 -34.49 -0.35 -6.88 16 3 C 0.17 3.92 6.69 -39.20 -0.26 3.65 16 4 C -0.37 -8.33 9.02 -39.14 -0.35 -8.68 16 5 C 0.15 3.70 7.28 -39.51 -0.29 3.42 16 6 F -0.16 -3.70 17.26 2.25 0.04 -3.66 16 7 C -0.27 -6.87 7.94 -38.84 -0.31 -7.18 16 8 C 0.12 3.13 5.27 -106.71 -0.56 2.57 16 9 C -0.47 -11.73 5.74 -37.84 -0.22 -11.94 16 10 H 0.09 2.32 7.24 -52.48 -0.38 1.94 16 11 C 0.04 0.85 4.91 -17.33 -0.09 0.76 16 12 N -0.78 -19.29 12.33 55.55 0.69 -18.61 16 13 Si 1.06 20.37 30.00 -169.99 -5.10 15.27 16 14 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 15 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 16 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 17 C -0.07 -1.65 5.61 -38.24 -0.21 -1.86 16 18 O -0.30 -7.17 8.85 -33.73 -0.30 -7.47 16 19 C 0.09 1.71 3.40 -26.73 -0.09 1.62 16 20 C -0.14 -2.34 9.56 37.16 0.36 -1.99 16 21 C -0.17 -3.39 8.40 37.16 0.31 -3.07 16 22 H 0.05 0.69 7.65 -51.93 -0.40 0.29 16 23 H 0.05 0.71 7.65 -51.93 -0.40 0.32 16 24 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.11 2.25 6.26 -52.49 -0.33 1.92 16 26 H 0.12 3.12 6.55 -52.48 -0.34 2.78 16 27 H 0.30 7.76 6.78 -40.82 -0.28 7.49 16 28 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.87 5.75 -51.93 -0.30 1.57 16 LS Contribution 288.31 15.07 4.34 4.34 Total: -1.00 -26.90 288.31 -5.57 -32.47 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.16 Total: 5.76 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -0.72 Total: -21.23 kcal Atomic # 7 Polarization: -19.29 SS G_CDS: 0.69 Total: -18.61 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.65 Total: -14.35 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.10 Total: 15.27 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.90 -5.57 -32.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216242297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.389 kcal (2) G-P(sol) polarization free energy of solvation -26.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds