Wall clock time and date at job start Mon Mar 30 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36010 * 117.00145 * 2 1 4 4 C 1.38661 * 119.94274 * 0.02562 * 3 2 1 5 5 C 1.39016 * 120.50946 * 179.97438 * 4 3 2 6 6 F 1.35104 * 119.79373 * 180.02562 * 5 4 3 7 7 C 1.37658 * 120.40256 * 359.97438 * 5 4 3 8 8 C 1.40771 * 119.88074 * 0.02562 * 7 5 4 9 9 C 1.41171 * 120.25064 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99870 * 205.79929 * 9 8 7 11 11 C 1.39910 * 120.00193 * 25.79985 * 9 8 7 12 12 N 1.30879 * 120.00192 * 26.18339 * 11 9 8 13 13 Si 1.86801 * 120.00231 * 206.18156 * 11 9 8 14 14 H 1.48503 * 109.47413 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47254 * 300.00203 * 13 11 9 16 16 H 1.48499 * 109.46841 * 60.00326 * 13 11 9 17 17 C 1.38847 * 119.94562 * 180.29982 * 3 2 1 18 18 O 1.35766 * 120.20455 * 359.97438 * 17 3 2 19 19 C 1.42900 * 117.00318 * 270.30376 * 18 17 3 20 20 C 1.53002 * 109.47319 * 149.99883 * 19 18 17 21 21 C 1.53001 * 109.46642 * 269.99915 * 19 18 17 22 22 H 1.08996 * 109.46806 * 299.99731 * 1 2 3 23 23 H 1.08995 * 109.47039 * 59.99896 * 1 2 3 24 24 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.74934 * 0.02562 * 4 3 2 26 26 H 1.08005 * 120.06215 * 180.02562 * 7 5 4 27 27 H 0.97002 * 119.99418 * 5.91160 * 12 11 9 28 28 H 1.09000 * 109.47058 * 29.99097 * 19 18 17 29 29 H 1.08997 * 109.46991 * 59.99817 * 20 19 18 30 30 H 1.08994 * 109.46927 * 179.97438 * 20 19 18 31 31 H 1.08999 * 109.46887 * 299.99799 * 20 19 18 32 32 H 1.08997 * 109.46982 * 180.02562 * 21 19 18 33 33 H 1.09004 * 109.47182 * 299.99521 * 21 19 18 34 34 H 1.09001 * 109.47553 * 59.99512 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2901 2.3740 0.0005 5 6 1.9090 3.6188 0.0011 6 9 1.1580 4.7419 0.0021 7 6 3.2823 3.7141 0.0016 8 6 4.0664 2.5449 0.0011 9 6 5.4753 2.6335 0.0011 10 1 6.0671 1.8271 -0.4064 11 6 6.1051 3.7659 0.5289 12 7 5.5055 4.4798 1.4475 13 14 7.8018 4.2590 -0.0774 14 1 8.2446 5.4851 0.6338 15 1 8.7618 3.1579 0.1886 16 1 7.7473 4.5265 -1.5371 17 6 3.4331 1.2832 -0.0063 18 8 4.1755 0.1465 -0.0119 19 6 4.5305 -0.4029 1.2586 20 6 4.6618 -1.9225 1.1385 21 6 5.8650 0.1898 1.7155 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.2120 2.3117 0.0014 26 1 3.7573 4.6840 0.0025 27 1 4.6642 4.1776 1.8241 28 1 3.7571 -0.1615 1.9877 29 1 5.4352 -2.1639 0.4093 30 1 4.9331 -2.3414 2.1074 31 1 3.7111 -2.3447 0.8129 32 1 6.1361 -0.2295 2.6843 33 1 6.6385 -0.0516 0.9863 34 1 5.7715 1.2725 1.8010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216242297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:38 Heat of formation + Delta-G solvation = -135.906344 kcal Electronic energy + Delta-G solvation = -19503.450794 eV Core-core repulsion = 16315.212425 eV Total energy + Delta-G solvation = -3188.238369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.79408 -41.04114 -39.15303 -37.83688 -35.50844 -33.65332 -31.14312 -30.02345 -28.41882 -27.81052 -26.77316 -23.35988 -23.02378 -21.89115 -20.27927 -18.58885 -18.37562 -17.93043 -16.82632 -16.73099 -16.24153 -15.93149 -15.81523 -15.54229 -15.37252 -14.94581 -14.67382 -14.35387 -13.47755 -13.34022 -13.27779 -13.12511 -12.99988 -12.63929 -12.45144 -12.34851 -12.17354 -11.99813 -11.70559 -11.64724 -11.46758 -10.92044 -10.42286 -9.63976 -9.37966 -8.86028 -6.57592 0.46991 0.70322 1.51273 1.60336 1.80361 2.26750 2.41386 2.49030 2.97958 3.39664 3.57320 4.14727 4.20582 4.30197 4.35118 4.38227 4.41191 4.47322 4.60147 4.68062 4.76711 4.79953 4.96965 5.06419 5.15637 5.26109 5.33592 5.42378 5.54045 5.57097 5.70684 5.83273 5.98807 6.39754 6.51319 6.71909 7.20557 7.89468 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016764 B = 0.010465 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.802073 B = 2675.003969 C = 4089.195342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.326 6.326 3 C 0.167 3.833 4 C -0.361 4.361 5 C 0.147 3.853 6 F -0.156 7.156 7 C -0.291 4.291 8 C 0.102 3.898 9 C -0.486 4.486 10 H 0.087 0.913 11 C 0.008 3.992 12 N -0.793 5.793 13 Si 1.109 2.891 14 H -0.270 1.270 15 H -0.252 1.252 16 H -0.264 1.264 17 C -0.083 4.083 18 O -0.319 6.319 19 C 0.079 3.921 20 C -0.134 4.134 21 C -0.168 4.168 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.124 0.876 25 H 0.140 0.860 26 H 0.105 0.895 27 H 0.287 0.713 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 -7.042 0.470 7.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.239 6.239 3 C 0.121 3.879 4 C -0.381 4.381 5 C 0.127 3.873 6 F -0.135 7.135 7 C -0.311 4.311 8 C 0.098 3.902 9 C -0.512 4.512 10 H 0.105 0.895 11 C -0.211 4.211 12 N -0.414 5.414 13 Si 0.925 3.075 14 H -0.195 1.195 15 H -0.176 1.176 16 H -0.188 1.188 17 C -0.129 4.129 18 O -0.237 6.237 19 C 0.023 3.977 20 C -0.191 4.191 21 C -0.225 4.225 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.142 0.858 25 H 0.158 0.842 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.633 -6.122 0.527 6.177 hybrid contribution -2.006 -0.333 0.161 2.040 sum -2.640 -6.455 0.689 7.007 Atomic orbital electron populations 1.23271 0.77307 1.05141 1.01685 1.86091 1.22860 1.26323 1.88656 1.18888 0.90917 0.84040 0.94095 1.20331 0.99841 0.89925 1.28000 1.17364 0.88525 0.81490 0.99896 1.91360 1.76830 1.51208 1.94124 1.20862 0.91419 0.98931 1.19907 1.17632 0.94339 0.89307 0.88955 1.20606 0.91256 1.05378 1.33955 0.89499 1.28480 1.08867 0.91558 0.92231 1.70586 1.16835 1.37099 1.16878 0.83110 0.69222 0.77872 0.77271 1.19471 1.17565 1.18830 1.17957 0.85888 0.86687 1.22383 1.86001 1.70626 1.38127 1.28910 1.22396 0.95303 0.94849 0.85189 1.21779 1.02373 0.91822 1.03137 1.22395 0.97360 1.01894 1.00855 0.92539 0.92470 0.85765 0.84214 0.87667 0.90070 0.95056 0.91883 0.89252 0.92481 0.91058 0.92466 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.81 113.37 1.11 1.67 16 2 O -0.33 -12.97 10.27 -79.58 -0.82 -13.79 16 3 C 0.17 7.69 6.69 22.52 0.15 7.84 16 4 C -0.36 -16.02 9.02 22.56 0.20 -15.82 16 5 C 0.15 7.10 7.28 22.32 0.16 7.27 16 6 F -0.16 -7.16 17.26 44.97 0.78 -6.38 16 7 C -0.29 -15.19 7.94 22.75 0.18 -15.01 16 8 C 0.10 5.35 5.27 -21.22 -0.11 5.24 16 9 C -0.49 -24.65 5.74 23.40 0.13 -24.52 16 10 H 0.09 4.41 7.24 -2.91 -0.02 4.39 16 11 C 0.01 0.38 4.91 85.24 0.42 0.80 16 12 N -0.79 -40.64 12.33 21.82 0.27 -40.37 16 13 Si 1.11 40.86 30.00 68.60 2.06 42.92 16 14 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 15 H -0.25 -8.42 7.11 99.48 0.71 -7.72 16 16 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 17 C -0.08 -4.20 5.61 23.14 0.13 -4.07 16 18 O -0.32 -15.15 8.85 -76.85 -0.68 -15.83 16 19 C 0.08 3.10 3.40 30.60 0.10 3.21 16 20 C -0.13 -4.05 9.56 71.98 0.69 -3.36 16 21 C -0.17 -6.39 8.40 71.98 0.60 -5.79 16 22 H 0.06 1.47 7.65 -2.39 -0.02 1.45 16 23 H 0.06 1.50 7.65 -2.39 -0.02 1.48 16 24 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.14 5.30 6.26 -2.91 -0.02 5.28 16 26 H 0.11 5.71 6.55 -2.91 -0.02 5.69 16 27 H 0.29 15.45 6.78 -92.71 -0.63 14.82 16 28 H 0.03 1.30 7.91 -2.39 -0.02 1.29 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.05 2.30 5.75 -2.39 -0.01 2.29 16 Total: -1.00 -58.96 288.31 6.63 -52.33 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 1.25 Total: 23.67 kcal Atomic # 6 Polarization: -46.32 SS G_CDS: 3.78 Total: -42.54 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.27 Total: -40.37 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -1.50 Total: -29.63 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.78 Total: -6.38 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.06 Total: 42.92 kcal Total: -58.96 6.63 -52.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216242297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.573 kcal (2) G-P(sol) polarization free energy of solvation -58.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds