Wall clock time and date at job start Mon Mar 30 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 117.00266 * 2 1 4 4 C 1.37709 * 119.91751 * 0.02562 * 3 2 1 5 5 C 1.40792 * 119.78765 * 179.97438 * 4 3 2 6 6 C 1.41112 * 120.17784 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00370 * 208.36969 * 6 5 4 8 8 C 1.39858 * 119.99839 * 28.37042 * 6 5 4 9 9 N 1.30920 * 119.99984 * 13.02464 * 8 6 5 10 10 Si 1.86805 * 119.99952 * 193.03073 * 8 6 5 11 11 H 1.48497 * 109.47047 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47296 * 119.99674 * 10 8 6 13 13 H 1.48498 * 109.46849 * 239.99457 * 10 8 6 14 14 C 1.41132 * 119.64986 * 359.97438 * 5 4 3 15 15 F 1.35092 * 120.08308 * 179.97438 * 14 5 4 16 16 C 1.37736 * 119.83820 * 0.03948 * 14 5 4 17 17 C 1.39045 * 120.20498 * 359.95695 * 16 14 5 18 18 O 1.35743 * 119.81758 * 180.02562 * 17 16 14 19 19 C 1.42896 * 117.00074 * 354.60518 * 18 17 16 20 20 C 1.53005 * 109.47260 * 85.09359 * 19 18 17 21 21 C 1.53003 * 109.47314 * 205.09087 * 19 18 17 22 22 H 1.09005 * 109.47348 * 59.99541 * 1 2 3 23 23 H 1.09003 * 109.47245 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46834 * 299.99641 * 1 2 3 25 25 H 1.08003 * 120.11228 * 359.69978 * 4 3 2 26 26 H 0.96997 * 119.99730 * 180.02562 * 9 8 6 27 27 H 1.07996 * 119.89805 * 179.97438 * 16 14 5 28 28 H 1.08998 * 109.47131 * 325.09512 * 19 18 17 29 29 H 1.09004 * 109.46555 * 59.99799 * 20 19 18 30 30 H 1.08994 * 109.47257 * 179.97438 * 20 19 18 31 31 H 1.09003 * 109.46991 * 300.00076 * 20 19 18 32 32 H 1.09002 * 109.46351 * 60.00038 * 21 19 18 33 33 H 1.08998 * 109.46923 * 179.97438 * 21 19 18 34 34 H 1.08993 * 109.47007 * 300.00516 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2949 2.3656 0.0005 5 6 1.9369 3.6185 0.0011 6 6 1.1748 4.8062 0.0011 7 1 1.5759 5.7052 -0.4429 8 6 -0.1000 4.8189 0.5761 9 7 -0.4870 3.8228 1.3324 10 14 -1.2506 6.2573 0.2650 11 1 -0.5796 7.2463 -0.6163 12 1 -2.4888 5.7675 -0.3926 13 1 -1.5981 6.9016 1.5570 14 6 3.3469 3.6805 0.0016 15 9 3.9721 4.8781 0.0016 16 6 4.0840 2.5170 0.0008 17 6 3.4433 1.2830 0.0003 18 8 4.1775 0.1413 0.0000 19 6 5.5946 0.2812 -0.1195 20 6 6.2013 0.5264 1.2636 21 6 6.1850 -0.9982 -0.7158 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2163 2.3097 -0.0039 26 1 -1.3713 3.8315 1.7309 27 1 5.1630 2.5633 0.0008 28 1 5.8227 1.1247 -0.7710 29 1 5.9731 -0.3171 1.9151 30 1 7.2822 0.6327 1.1725 31 1 5.7807 1.4379 1.6884 32 1 5.7527 -1.1728 -1.7011 33 1 7.2658 -0.8912 -0.8073 34 1 5.9568 -1.8416 -0.0643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216242365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:36 Heat of formation + Delta-G solvation = -128.036136 kcal Electronic energy + Delta-G solvation = -19110.869720 eV Core-core repulsion = 15922.972629 eV Total energy + Delta-G solvation = -3187.897091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.25760 -41.07055 -39.43251 -37.61794 -35.32756 -33.78714 -31.22288 -30.30644 -28.32517 -28.11277 -26.57996 -23.95854 -22.61578 -21.64579 -19.78731 -19.03223 -18.05101 -17.56301 -17.06298 -16.63700 -16.31620 -15.96471 -15.89306 -15.32347 -15.18356 -15.09030 -14.26776 -14.02397 -13.69498 -13.49649 -13.42264 -13.06309 -12.95994 -12.61642 -12.59518 -12.55012 -12.23055 -12.11163 -11.76561 -11.57926 -11.48458 -11.42610 -10.84741 -9.36114 -8.80529 -8.50018 -6.39552 0.68601 0.76183 1.38258 1.45712 1.53318 2.19427 2.55735 2.57918 2.61422 3.38818 3.89768 3.98394 4.07446 4.13020 4.28711 4.43956 4.48809 4.58299 4.69976 4.75843 4.81325 4.86036 4.89876 4.94215 4.96987 5.19240 5.26421 5.28177 5.34594 5.59980 5.84165 5.95057 6.31906 6.48525 6.64618 6.76504 7.03830 8.27624 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.007059 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.787460 B = 3965.566415 C = 4824.796606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.330 6.330 3 C 0.098 3.902 4 C -0.206 4.206 5 C 0.062 3.938 6 C -0.489 4.489 7 H 0.073 0.927 8 C 0.038 3.962 9 N -0.823 5.823 10 Si 0.987 3.013 11 H -0.263 1.263 12 H -0.257 1.257 13 H -0.265 1.265 14 C -0.048 4.048 15 F -0.164 7.164 16 C -0.168 4.168 17 C 0.010 3.990 18 O -0.320 6.320 19 C 0.063 3.937 20 C -0.173 4.173 21 C -0.138 4.138 22 H 0.047 0.953 23 H 0.125 0.875 24 H 0.045 0.955 25 H 0.141 0.859 26 H 0.292 0.708 27 H 0.144 0.856 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 -6.111 -1.861 7.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.244 6.244 3 C 0.053 3.947 4 C -0.226 4.226 5 C 0.059 3.941 6 C -0.518 4.518 7 H 0.091 0.909 8 C -0.177 4.177 9 N -0.450 5.450 10 Si 0.807 3.193 11 H -0.187 1.187 12 H -0.181 1.181 13 H -0.189 1.189 14 C -0.069 4.069 15 F -0.143 7.143 16 C -0.187 4.187 17 C -0.035 4.035 18 O -0.236 6.236 19 C 0.007 3.993 20 C -0.231 4.231 21 C -0.195 4.195 22 H 0.066 0.934 23 H 0.143 0.857 24 H 0.064 0.936 25 H 0.159 0.841 26 H 0.103 0.897 27 H 0.162 0.838 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.037 -6.546 -1.694 7.876 hybrid contribution -0.517 1.323 0.110 1.425 sum 3.520 -5.223 -1.584 6.495 Atomic orbital electron populations 1.23098 0.77784 1.04411 1.01108 1.85981 1.22207 1.26572 1.89661 1.18397 0.89343 0.85012 1.01981 1.21122 1.00171 0.89644 1.11688 1.17711 0.89730 0.94730 0.91918 1.19582 1.00817 0.96669 1.34761 0.90905 1.26704 0.99005 1.00331 0.91630 1.69846 1.20483 1.32352 1.22274 0.85082 0.77519 0.77433 0.79250 1.18670 1.18111 1.18940 1.17762 0.90893 0.79765 1.18466 1.91243 1.82584 1.45034 1.95427 1.20583 0.99755 0.89989 1.08376 1.17547 0.87658 0.85252 1.13002 1.86015 1.19545 1.28073 1.90004 1.22630 0.78516 1.00524 0.97657 1.22338 1.02208 1.01934 0.96592 1.21817 1.01573 0.95215 1.00860 0.93384 0.85710 0.93582 0.84135 0.89695 0.83842 0.91777 0.91753 0.88621 0.93963 0.92331 0.88074 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 9.81 113.37 1.11 2.19 16 2 O -0.33 -14.65 10.27 -79.49 -0.82 -15.47 16 3 C 0.10 4.82 6.70 22.54 0.15 4.97 16 4 C -0.21 -10.78 7.62 22.77 0.17 -10.60 16 5 C 0.06 3.45 5.55 -21.24 -0.12 3.33 16 6 C -0.49 -26.85 8.74 23.37 0.20 -26.64 16 7 H 0.07 4.00 7.76 -2.91 -0.02 3.97 16 8 C 0.04 1.90 5.21 85.22 0.44 2.34 16 9 N -0.82 -41.53 10.93 21.82 0.24 -41.29 16 10 Si 0.99 37.74 29.58 68.60 2.03 39.77 16 11 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 12 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 13 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 14 C -0.05 -2.54 7.30 22.86 0.17 -2.38 16 15 F -0.16 -8.47 16.74 44.97 0.75 -7.72 16 16 C -0.17 -7.76 8.19 22.34 0.18 -7.58 16 17 C 0.01 0.48 6.64 22.86 0.15 0.64 16 18 O -0.32 -13.24 9.56 -76.68 -0.73 -13.97 16 19 C 0.06 1.93 2.84 30.60 0.09 2.02 16 20 C -0.17 -4.73 9.17 71.98 0.66 -4.07 16 21 C -0.14 -3.16 9.56 71.98 0.69 -2.47 16 22 H 0.05 1.66 7.65 -2.38 -0.02 1.64 16 23 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 24 H 0.05 1.71 7.66 -2.39 -0.02 1.70 16 25 H 0.14 7.27 4.48 -2.91 -0.01 7.26 16 26 H 0.29 13.10 8.30 -92.71 -0.77 12.33 16 27 H 0.14 5.71 5.39 -2.91 -0.02 5.70 16 28 H 0.06 1.98 6.28 -2.39 -0.01 1.96 16 29 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.33 6.92 -2.39 -0.02 1.32 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -63.07 289.03 6.49 -56.58 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 1.12 Total: 20.35 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 3.90 Total: -38.25 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.24 Total: -41.29 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.55 Total: -29.44 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 0.75 Total: -7.72 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -63.07 6.49 -56.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216242365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.459 kcal (2) G-P(sol) polarization free energy of solvation -63.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds