Wall clock time and date at job start Mon Mar 30 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35738 * 116.99755 * 2 1 4 4 C 1.39036 * 119.82315 * 359.96884 * 3 2 1 5 5 C 1.37738 * 120.20991 * 179.72159 * 4 3 2 6 6 F 1.35098 * 120.08751 * 180.28244 * 5 4 3 7 7 C 1.41143 * 119.83617 * 0.56049 * 5 4 3 8 8 C 1.41106 * 120.17568 * 179.74596 * 7 5 4 9 9 H 1.08001 * 120.00121 * 335.05647 * 8 7 5 10 10 C 1.39855 * 119.99831 * 154.78660 * 8 7 5 11 11 N 1.30913 * 120.00230 * 343.60972 * 10 8 7 12 12 Si 1.86807 * 119.99771 * 163.60397 * 10 8 7 13 13 H 1.48497 * 109.46945 * 60.00324 * 12 10 8 14 14 H 1.48504 * 109.46804 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47320 * 300.00257 * 12 10 8 16 16 C 1.40795 * 119.64480 * 359.46596 * 7 5 4 17 17 C 1.37703 * 119.79067 * 0.25478 * 16 7 5 18 18 O 1.35998 * 119.92115 * 179.97438 * 17 16 7 19 19 C 1.42895 * 117.00112 * 5.31290 * 18 17 16 20 20 C 1.52998 * 109.47236 * 154.31703 * 19 18 17 21 21 C 1.53008 * 109.47110 * 274.31910 * 19 18 17 22 22 H 1.08994 * 109.47382 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47224 * 300.00611 * 1 2 3 24 24 H 1.09002 * 109.46976 * 60.00406 * 1 2 3 25 25 H 1.08004 * 119.89742 * 359.97438 * 4 3 2 26 26 H 0.97007 * 120.00400 * 180.02562 * 11 10 8 27 27 H 1.07994 * 120.10350 * 180.22944 * 16 7 5 28 28 H 1.08998 * 109.47010 * 34.31507 * 19 18 17 29 29 H 1.08998 * 109.47281 * 59.99970 * 20 19 18 30 30 H 1.09003 * 109.46967 * 180.02562 * 20 19 18 31 31 H 1.08994 * 109.47147 * 299.99795 * 20 19 18 32 32 H 1.08999 * 109.46772 * 180.02562 * 21 19 18 33 33 H 1.08998 * 109.46854 * 299.99692 * 21 19 18 34 34 H 1.08997 * 109.47147 * 59.99886 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2843 2.3731 -0.0007 5 6 1.9013 3.6046 0.0051 6 9 1.1595 4.7337 0.0102 7 6 3.3104 3.6841 -0.0002 8 6 3.9499 4.9419 0.0002 9 1 3.4371 5.8085 -0.3902 10 6 5.2456 5.0674 0.5114 11 7 5.7444 4.1240 1.2697 12 14 6.2648 6.5811 0.1118 13 1 5.5649 7.7937 0.6066 14 1 7.5914 6.4725 0.7702 15 1 6.4479 6.6806 -1.3585 16 6 4.0746 2.5016 -0.0001 17 6 3.4423 1.2783 0.0000 18 8 4.1778 0.1344 -0.0004 19 6 5.5950 0.2744 0.1171 20 6 6.1845 -0.9991 0.7266 21 6 6.2014 0.5045 -1.2688 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.2060 2.3113 -0.0016 26 1 6.6430 4.2112 1.6246 27 1 5.1533 2.5537 -0.0004 28 1 5.8241 1.1245 0.7596 29 1 5.9554 -1.8493 0.0841 30 1 7.2656 -0.8921 0.8166 31 1 5.7526 -1.1630 1.7138 32 1 7.2825 0.6108 -1.1792 33 1 5.9723 -0.3456 -1.9113 34 1 5.7814 1.4117 -1.7030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216242402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:42 Heat of formation + Delta-G solvation = -112.112246 kcal Electronic energy + Delta-G solvation = -19260.585172 eV Core-core repulsion = 16073.378592 eV Total energy + Delta-G solvation = -3187.206580 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.27560 -39.32336 -37.74319 -35.83947 -33.49339 -32.31797 -29.38254 -28.42267 -27.07898 -26.57779 -24.74242 -22.24383 -20.93251 -19.86876 -18.03717 -17.17346 -16.29032 -15.87320 -15.14558 -15.03226 -14.51340 -14.44077 -13.96979 -13.72961 -13.61716 -13.32814 -12.69677 -12.35432 -12.27024 -12.03270 -11.84200 -11.60955 -11.44952 -11.09675 -11.02049 -10.74758 -10.65265 -10.39525 -10.27814 -10.07677 -9.65982 -9.61474 -9.02905 -7.49630 -6.98237 -6.63856 -4.43021 2.60421 2.63379 3.00757 3.04060 3.11594 3.84911 4.10341 4.28133 4.43935 5.31809 5.37275 5.47254 5.63405 5.71334 5.71905 5.82193 5.87470 5.90871 5.97099 6.09627 6.15180 6.26063 6.45522 6.57393 6.63145 6.78213 6.83073 7.06168 7.12007 7.50948 7.76792 7.86791 8.15498 8.31003 8.54952 8.66350 8.86553 10.05064 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.009845 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.170863 B = 2843.335919 C = 4353.189635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.316 6.316 3 C -0.005 4.005 4 C -0.172 4.172 5 C -0.025 4.025 6 F -0.160 7.160 7 C 0.093 3.907 8 C -0.450 4.450 9 H 0.083 0.917 10 C 0.077 3.923 11 N -0.794 5.794 12 Si 0.913 3.087 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.262 1.262 16 C -0.206 4.206 17 C 0.116 3.884 18 O -0.312 6.312 19 C 0.073 3.927 20 C -0.143 4.143 21 C -0.174 4.174 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.115 0.885 26 H 0.283 0.717 27 H 0.150 0.850 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -5.286 -1.491 5.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.232 6.232 3 C -0.049 4.049 4 C -0.192 4.192 5 C -0.045 4.045 6 F -0.140 7.140 7 C 0.089 3.911 8 C -0.480 4.480 9 H 0.101 0.899 10 C -0.141 4.141 11 N -0.420 5.420 12 Si 0.737 3.263 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.187 1.187 16 C -0.226 4.226 17 C 0.071 3.929 18 O -0.227 6.227 19 C 0.016 3.984 20 C -0.200 4.200 21 C -0.232 4.232 22 H 0.102 0.898 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.133 0.867 26 H 0.094 0.906 27 H 0.167 0.833 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.939 -5.680 -1.357 5.915 hybrid contribution 0.173 1.242 -0.057 1.255 sum 1.112 -4.438 -1.414 4.789 Atomic orbital electron populations 1.22756 0.81072 1.01952 1.00302 1.85966 1.18874 1.27065 1.91254 1.17454 0.88442 0.83445 1.15541 1.20345 0.98307 0.91076 1.09426 1.17464 0.89248 0.80510 1.17289 1.91270 1.76759 1.50646 1.95285 1.17347 0.88539 0.94229 0.90946 1.19387 0.98493 0.95000 1.35081 0.89862 1.25890 0.97803 0.98090 0.92345 1.69811 1.16506 1.33266 1.22370 0.86278 0.78541 0.81492 0.80004 1.18826 1.20167 1.18663 1.21220 1.00929 0.88877 1.11565 1.18138 0.87329 0.85758 1.01661 1.86050 1.17926 1.29753 1.88998 1.22298 0.79837 0.99299 0.96929 1.21796 0.99959 0.97053 1.01204 1.22316 1.00487 1.02733 0.97623 0.89796 0.93897 0.93921 0.86688 0.90601 0.83303 0.89685 0.92244 0.91382 0.92094 0.92028 0.92416 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.32 -6.82 10.26 -33.55 -0.34 -7.16 16 3 C 0.00 -0.11 6.73 -38.67 -0.26 -0.37 16 4 C -0.17 -4.01 8.98 -39.47 -0.35 -4.36 16 5 C -0.02 -0.63 7.30 -38.66 -0.28 -0.92 16 6 F -0.16 -4.06 16.70 2.25 0.04 -4.02 16 7 C 0.09 2.48 5.58 -106.74 -0.60 1.88 16 8 C -0.45 -11.89 8.77 -37.89 -0.33 -12.23 16 9 H 0.08 2.17 7.73 -52.49 -0.41 1.77 16 10 C 0.08 1.86 5.16 -17.34 -0.09 1.77 16 11 N -0.79 -19.45 10.89 55.54 0.60 -18.84 16 12 Si 0.91 18.22 29.59 -169.99 -5.03 13.19 16 13 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 14 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 16 C -0.21 -5.20 6.90 -38.81 -0.27 -5.46 16 17 C 0.12 2.82 6.62 -39.16 -0.26 2.56 16 18 O -0.31 -6.96 9.57 -34.37 -0.33 -7.29 16 19 C 0.07 1.35 2.84 -26.73 -0.08 1.28 16 20 C -0.14 -2.11 9.56 37.16 0.36 -1.75 16 21 C -0.17 -2.90 9.19 37.16 0.34 -2.56 16 22 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 24 H 0.04 0.64 7.64 -51.93 -0.40 0.24 16 25 H 0.12 2.34 6.26 -52.48 -0.33 2.01 16 26 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 27 H 0.15 3.68 3.49 -52.49 -0.18 3.50 16 28 H 0.09 1.73 6.25 -51.93 -0.32 1.41 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.24 7.00 -51.93 -0.36 0.87 16 LS Contribution 288.94 15.07 4.35 4.35 Total: -1.00 -28.47 288.94 -5.61 -34.08 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.07 Total: 4.29 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -0.83 Total: -18.60 kcal Atomic # 7 Polarization: -19.45 SS G_CDS: 0.60 Total: -18.84 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.67 Total: -14.45 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.02 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.47 -5.61 -34.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216242402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.032 kcal (2) G-P(sol) polarization free energy of solvation -28.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds