Wall clock time and date at job start Mon Mar 30 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35738 * 116.99755 * 2 1 4 4 C 1.39036 * 119.82315 * 359.96884 * 3 2 1 5 5 C 1.37738 * 120.20991 * 179.72159 * 4 3 2 6 6 F 1.35098 * 120.08751 * 180.28244 * 5 4 3 7 7 C 1.41143 * 119.83617 * 0.56049 * 5 4 3 8 8 C 1.41106 * 120.17568 * 179.74596 * 7 5 4 9 9 H 1.08001 * 120.00121 * 335.05647 * 8 7 5 10 10 C 1.39855 * 119.99831 * 154.78660 * 8 7 5 11 11 N 1.30913 * 120.00230 * 343.60972 * 10 8 7 12 12 Si 1.86807 * 119.99771 * 163.60397 * 10 8 7 13 13 H 1.48497 * 109.46945 * 60.00324 * 12 10 8 14 14 H 1.48504 * 109.46804 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47320 * 300.00257 * 12 10 8 16 16 C 1.40795 * 119.64480 * 359.46596 * 7 5 4 17 17 C 1.37703 * 119.79067 * 0.25478 * 16 7 5 18 18 O 1.35998 * 119.92115 * 179.97438 * 17 16 7 19 19 C 1.42895 * 117.00112 * 5.31290 * 18 17 16 20 20 C 1.52998 * 109.47236 * 154.31703 * 19 18 17 21 21 C 1.53008 * 109.47110 * 274.31910 * 19 18 17 22 22 H 1.08994 * 109.47382 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47224 * 300.00611 * 1 2 3 24 24 H 1.09002 * 109.46976 * 60.00406 * 1 2 3 25 25 H 1.08004 * 119.89742 * 359.97438 * 4 3 2 26 26 H 0.97007 * 120.00400 * 180.02562 * 11 10 8 27 27 H 1.07994 * 120.10350 * 180.22944 * 16 7 5 28 28 H 1.08998 * 109.47010 * 34.31507 * 19 18 17 29 29 H 1.08998 * 109.47281 * 59.99970 * 20 19 18 30 30 H 1.09003 * 109.46967 * 180.02562 * 20 19 18 31 31 H 1.08994 * 109.47147 * 299.99795 * 20 19 18 32 32 H 1.08999 * 109.46772 * 180.02562 * 21 19 18 33 33 H 1.08998 * 109.46854 * 299.99692 * 21 19 18 34 34 H 1.08997 * 109.47147 * 59.99886 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2843 2.3731 -0.0007 5 6 1.9013 3.6046 0.0051 6 9 1.1595 4.7337 0.0102 7 6 3.3104 3.6841 -0.0002 8 6 3.9499 4.9419 0.0002 9 1 3.4371 5.8085 -0.3902 10 6 5.2456 5.0674 0.5114 11 7 5.7444 4.1240 1.2697 12 14 6.2648 6.5811 0.1118 13 1 5.5649 7.7937 0.6066 14 1 7.5914 6.4725 0.7702 15 1 6.4479 6.6806 -1.3585 16 6 4.0746 2.5016 -0.0001 17 6 3.4423 1.2783 0.0000 18 8 4.1778 0.1344 -0.0004 19 6 5.5950 0.2744 0.1171 20 6 6.1845 -0.9991 0.7266 21 6 6.2014 0.5045 -1.2688 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.2060 2.3113 -0.0016 26 1 6.6430 4.2112 1.6246 27 1 5.1533 2.5537 -0.0004 28 1 5.8241 1.1245 0.7596 29 1 5.9554 -1.8493 0.0841 30 1 7.2656 -0.8921 0.8166 31 1 5.7526 -1.1630 1.7138 32 1 7.2825 0.6108 -1.1792 33 1 5.9723 -0.3456 -1.9113 34 1 5.7814 1.4117 -1.7030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216242402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:41 Heat of formation + Delta-G solvation = -127.883690 kcal Electronic energy + Delta-G solvation = -19261.269073 eV Core-core repulsion = 16073.378592 eV Total energy + Delta-G solvation = -3187.890481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.23984 -41.06294 -39.37069 -37.64364 -35.29363 -33.82841 -31.24671 -30.20029 -28.51770 -27.95279 -26.53298 -23.92822 -22.76607 -21.48380 -19.84118 -18.95140 -18.06670 -17.65309 -16.91457 -16.66254 -16.21589 -15.95598 -15.84620 -15.34948 -15.26772 -15.07431 -14.29893 -13.97985 -13.75223 -13.53423 -13.35974 -13.06135 -12.99394 -12.62722 -12.53116 -12.36569 -12.27237 -12.06891 -11.92259 -11.64333 -11.38940 -11.35655 -10.83452 -9.37413 -8.82476 -8.48966 -6.38040 0.71220 0.77730 1.37786 1.47453 1.50998 2.18519 2.48262 2.58704 2.72976 3.41313 3.94517 4.00028 4.09717 4.15300 4.31789 4.44865 4.47949 4.59408 4.73197 4.75213 4.78334 4.87021 4.90545 4.94428 5.04007 5.18387 5.25826 5.28188 5.34053 5.60680 5.85398 5.97707 6.35929 6.49430 6.64871 6.75063 7.05563 8.24547 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.009845 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.170863 B = 2843.335919 C = 4353.189635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.331 6.331 3 C -0.006 4.006 4 C -0.166 4.166 5 C -0.057 4.057 6 F -0.165 7.165 7 C 0.063 3.937 8 C -0.488 4.488 9 H 0.073 0.927 10 C 0.041 3.959 11 N -0.814 5.814 12 Si 0.983 3.017 13 H -0.264 1.264 14 H -0.259 1.259 15 H -0.259 1.259 16 C -0.213 4.213 17 C 0.107 3.893 18 O -0.321 6.321 19 C 0.063 3.937 20 C -0.135 4.135 21 C -0.168 4.168 22 H 0.120 0.880 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.144 0.856 26 H 0.294 0.706 27 H 0.149 0.851 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -6.215 -1.597 6.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.247 6.247 3 C -0.050 4.050 4 C -0.185 4.185 5 C -0.077 4.077 6 F -0.144 7.144 7 C 0.060 3.940 8 C -0.516 4.516 9 H 0.091 0.909 10 C -0.175 4.175 11 N -0.439 5.439 12 Si 0.803 3.197 13 H -0.189 1.189 14 H -0.183 1.183 15 H -0.183 1.183 16 C -0.234 4.234 17 C 0.062 3.938 18 O -0.236 6.236 19 C 0.007 3.993 20 C -0.192 4.192 21 C -0.225 4.225 22 H 0.138 0.862 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.161 0.839 26 H 0.105 0.895 27 H 0.166 0.834 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.742 -6.639 -1.457 7.016 hybrid contribution -0.133 1.385 0.001 1.391 sum 1.609 -5.254 -1.456 5.684 Atomic orbital electron populations 1.23149 0.78073 1.04724 1.01123 1.85944 1.21961 1.25787 1.90998 1.17638 0.88644 0.84414 1.14351 1.20562 0.99769 0.90057 1.08143 1.17722 0.89359 0.81289 1.19361 1.91237 1.76689 1.50977 1.95511 1.17729 0.89465 0.95046 0.91764 1.19557 1.00230 0.94783 1.37078 0.90886 1.26688 0.98015 1.01281 0.91499 1.69830 1.17247 1.34720 1.22140 0.85232 0.77298 0.77280 0.79857 1.18852 1.18273 1.18334 1.21232 1.00965 0.89031 1.12122 1.18345 0.88250 0.86093 1.01135 1.86038 1.19880 1.28933 1.88761 1.22631 0.78196 1.00589 0.97920 1.21801 1.01439 0.95220 1.00753 1.22266 1.01938 1.01874 0.96431 0.86192 0.93128 0.92907 0.83852 0.89499 0.83357 0.92078 0.91080 0.88403 0.92516 0.89209 0.91113 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 9.80 113.37 1.11 1.82 16 2 O -0.33 -13.83 10.26 -76.63 -0.79 -14.62 16 3 C -0.01 -0.27 6.73 22.86 0.15 -0.12 16 4 C -0.17 -7.74 8.98 22.34 0.20 -7.54 16 5 C -0.06 -3.01 7.30 22.86 0.17 -2.84 16 6 F -0.16 -8.58 16.70 44.97 0.75 -7.82 16 7 C 0.06 3.50 5.58 -21.24 -0.12 3.38 16 8 C -0.49 -26.66 8.77 23.37 0.20 -26.46 16 9 H 0.07 3.98 7.73 -2.91 -0.02 3.96 16 10 C 0.04 2.03 5.16 85.22 0.44 2.47 16 11 N -0.81 -40.28 10.89 21.81 0.24 -40.04 16 12 Si 0.98 37.22 29.59 68.60 2.03 39.25 16 13 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 14 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 15 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 16 C -0.21 -11.12 6.90 22.77 0.16 -10.96 16 17 C 0.11 5.29 6.62 22.54 0.15 5.44 16 18 O -0.32 -14.29 9.57 -79.54 -0.76 -15.06 16 19 C 0.06 2.29 2.84 30.60 0.09 2.37 16 20 C -0.14 -3.70 9.56 71.98 0.69 -3.01 16 21 C -0.17 -5.41 9.19 71.98 0.66 -4.75 16 22 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 23 H 0.05 1.42 7.65 -2.38 -0.02 1.40 16 24 H 0.05 1.46 7.64 -2.39 -0.02 1.44 16 25 H 0.14 5.67 6.26 -2.91 -0.02 5.65 16 26 H 0.29 12.94 8.30 -92.70 -0.77 12.17 16 27 H 0.15 7.59 3.49 -2.91 -0.01 7.58 16 28 H 0.06 2.52 6.25 -2.39 -0.01 2.51 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.04 1.46 7.00 -2.39 -0.02 1.45 16 Total: -1.00 -62.80 288.94 6.49 -56.31 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 1.12 Total: 22.15 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 3.90 Total: -40.18 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.24 Total: -40.04 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -1.55 Total: -29.67 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 0.75 Total: -7.82 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -62.80 6.49 -56.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216242402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.570 kcal (2) G-P(sol) polarization free energy of solvation -62.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds