Wall clock time and date at job start Mon Mar 30 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35959 * 116.99606 * 2 1 4 4 C 1.38748 * 120.03236 * 269.72505 * 3 2 1 5 5 C 1.50692 * 119.96858 * 359.97438 * 4 3 2 6 6 C 1.38181 * 120.06474 * 179.72620 * 4 3 2 7 7 C 1.38223 * 120.13429 * 0.55162 * 6 4 3 8 8 C 1.50701 * 119.96240 * 179.74743 * 7 6 4 9 9 C 1.50701 * 109.47271 * 264.97897 * 8 7 6 10 10 H 1.08000 * 119.99897 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00444 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99901 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00484 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47099 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47480 * 120.00318 * 13 11 9 16 16 H 1.48501 * 109.47637 * 240.00370 * 13 11 9 17 17 C 1.38700 * 120.07188 * 359.72609 * 7 6 4 18 18 O 1.35955 * 120.03312 * 179.97438 * 17 7 6 19 19 C 1.42900 * 116.99991 * 270.02128 * 18 17 7 20 20 C 1.38751 * 120.03359 * 90.00276 * 3 2 1 21 21 F 1.35105 * 120.06989 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47054 * 299.99744 * 1 2 3 24 24 H 1.09000 * 109.47187 * 59.99800 * 1 2 3 25 25 H 1.09001 * 109.47311 * 89.99504 * 5 4 3 26 26 H 1.09004 * 109.47049 * 209.99850 * 5 4 3 27 27 H 1.08999 * 109.47397 * 329.99617 * 5 4 3 28 28 H 1.07999 * 119.93227 * 180.28494 * 6 4 3 29 29 H 1.08996 * 109.47206 * 24.97945 * 8 7 6 30 30 H 1.08998 * 109.47288 * 144.97838 * 8 7 6 31 31 H 0.96999 * 119.99902 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.47121 * 300.00145 * 19 18 17 33 33 H 1.08998 * 109.47169 * 60.00248 * 19 18 17 34 34 H 1.09005 * 109.46998 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 2.3666 1.8276 -1.2012 5 6 2.0307 1.1531 -2.5062 6 6 2.9887 3.0614 -1.2020 7 6 3.3041 3.6803 -0.0070 8 6 3.9877 5.0233 -0.0124 9 6 5.4772 4.8294 0.1098 10 1 5.8877 3.8332 0.1836 11 6 6.3159 5.9235 0.1264 12 7 5.8160 7.1367 0.0361 13 14 8.1620 5.6831 0.2786 14 1 8.4668 4.2323 0.3648 15 1 8.8363 6.2603 -0.9119 16 1 8.6509 6.3656 1.5036 17 6 2.9916 3.0669 1.1971 18 8 3.3026 3.6761 2.3720 19 6 4.5855 3.3888 2.9321 20 6 2.3615 1.8302 1.2012 21 9 2.0554 1.2304 2.3725 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.0338 1.4566 -2.8260 26 1 2.7592 1.4434 -3.2633 27 1 2.0561 0.0716 -2.3734 28 1 3.2329 3.5412 -2.1383 29 1 3.7641 5.5411 -0.9451 30 1 3.6285 5.6173 0.8280 31 1 6.4060 7.9065 0.0481 32 1 4.6658 2.3193 3.1265 33 1 5.3638 3.6901 2.2310 34 1 4.7052 3.9375 3.8663 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216243509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:54 Heat of formation + Delta-G solvation = -123.878481 kcal Electronic energy + Delta-G solvation = -19204.458905 eV Core-core repulsion = 16016.742103 eV Total energy + Delta-G solvation = -3187.716802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.97226 -41.23816 -39.71351 -37.68481 -35.37034 -33.25517 -32.19520 -29.34437 -28.58997 -27.80946 -26.36631 -25.10092 -23.30351 -21.75926 -19.36342 -18.70109 -18.46503 -17.87369 -17.37696 -16.95895 -16.49164 -16.31856 -15.81988 -15.60414 -15.21884 -14.84256 -14.50046 -14.25437 -14.15268 -13.65963 -13.40892 -13.19039 -12.96386 -12.74190 -12.70946 -12.52205 -12.41523 -12.14068 -11.53976 -11.41860 -11.15015 -10.84282 -10.58834 -9.58203 -9.37724 -8.19323 -6.30446 -0.03140 0.00543 1.39852 1.42022 1.53324 2.18624 2.42154 2.47313 3.07359 3.09583 3.14861 3.79513 3.91246 4.17178 4.34613 4.42452 4.46251 4.46655 4.56011 4.64445 4.69825 4.81634 4.84961 4.90360 4.96282 5.01789 5.21094 5.34622 5.40999 5.55301 5.73691 5.76638 6.13866 6.32897 6.53234 6.79100 7.36195 8.90858 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.027387 B = 0.006761 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.147058 B = 4140.689357 C = 4684.876126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.336 6.336 3 C 0.050 3.950 4 C -0.072 4.072 5 C -0.104 4.104 6 C -0.109 4.109 7 C -0.052 4.052 8 C 0.063 3.937 9 C -0.515 4.515 10 H 0.055 0.945 11 C 0.013 3.987 12 N -0.926 5.926 13 Si 0.956 3.044 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.278 1.278 17 C 0.048 3.952 18 O -0.343 6.343 19 C 0.029 3.971 20 C 0.047 3.953 21 F -0.138 7.138 22 H 0.123 0.877 23 H 0.037 0.963 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.017 0.983 30 H 0.007 0.993 31 H 0.265 0.735 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.968 -12.447 -2.553 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C 0.006 3.994 4 C -0.073 4.073 5 C -0.161 4.161 6 C -0.127 4.127 7 C -0.052 4.052 8 C 0.027 3.973 9 C -0.553 4.553 10 H 0.073 0.927 11 C -0.186 4.186 12 N -0.566 5.566 13 Si 0.781 3.219 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.204 1.204 17 C 0.003 3.997 18 O -0.260 6.260 19 C -0.064 4.064 20 C 0.027 3.973 21 F -0.117 7.117 22 H 0.141 0.859 23 H 0.056 0.944 24 H 0.083 0.917 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.036 0.964 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.967 -12.356 -2.399 14.897 hybrid contribution 0.934 0.436 0.704 1.249 sum -7.033 -11.920 -1.695 13.944 Atomic orbital electron populations 1.23306 0.77140 1.05137 1.01241 1.86019 1.21847 1.23199 1.94205 1.18232 1.02647 0.88481 0.90084 1.20368 0.97597 0.93590 0.95702 1.20778 1.03337 1.00750 0.91200 1.21052 0.99150 0.94634 0.97852 1.20786 0.94157 0.98423 0.91859 1.18003 0.94478 0.88208 0.96653 1.21172 0.91048 0.92618 1.50483 0.92664 1.25780 1.03369 0.94755 0.94707 1.70078 1.36875 0.98681 1.50925 0.85526 0.79773 0.78638 0.77958 1.18816 1.20241 1.20395 1.18536 1.02574 0.91386 0.87173 1.85915 1.36468 1.68820 1.34806 1.23239 0.83565 1.00237 0.99374 1.18589 1.05239 0.91755 0.81761 1.91403 1.91319 1.82955 1.46031 0.85894 0.94413 0.91744 0.89011 0.89628 0.90196 0.83301 0.96437 0.97500 0.92582 0.93605 0.92477 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.13 113.37 1.26 1.78 16 2 O -0.34 -9.77 9.32 -93.09 -0.87 -10.64 16 3 C 0.05 1.69 5.70 22.51 0.13 1.82 16 4 C -0.07 -2.21 5.89 -19.76 -0.12 -2.32 16 5 C -0.10 -2.19 9.79 71.23 0.70 -1.49 16 6 C -0.11 -3.92 9.32 22.25 0.21 -3.71 16 7 C -0.05 -2.27 5.08 -19.76 -0.10 -2.37 16 8 C 0.06 3.30 4.82 29.10 0.14 3.44 16 9 C -0.52 -27.86 7.27 25.60 0.19 -27.67 16 10 H 0.06 2.95 7.32 -2.91 -0.02 2.93 16 11 C 0.01 0.69 5.46 84.65 0.46 1.16 16 12 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 13 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 C 0.05 2.09 5.70 22.51 0.13 2.22 16 18 O -0.34 -15.52 9.41 -93.05 -0.88 -16.40 16 19 C 0.03 1.16 11.13 113.37 1.26 2.42 16 20 C 0.05 1.83 7.32 22.53 0.16 1.99 16 21 F -0.14 -5.40 16.95 44.97 0.76 -4.64 16 22 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.04 0.82 8.14 -2.38 -0.02 0.81 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.60 8.09 -2.38 -0.02 1.58 16 27 H 0.08 1.59 7.53 -2.39 -0.02 1.57 16 28 H 0.15 4.86 8.06 -2.91 -0.02 4.84 16 29 H 0.02 0.94 8.05 -2.39 -0.02 0.92 16 30 H 0.01 0.39 7.69 -2.39 -0.02 0.37 16 31 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 2.50 5.66 -2.39 -0.01 2.49 16 34 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 Total: -1.00 -64.99 297.98 6.85 -58.14 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.10 Total: 5.39 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 4.42 Total: -22.75 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.28 Total: -53.71 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.74 Total: -27.04 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.76 Total: -4.64 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -64.99 6.85 -58.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216243509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.741 kcal (2) G-P(sol) polarization free energy of solvation -64.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds