Wall clock time and date at job start Mon Mar 30 2020 06:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 116.99713 * 2 1 4 4 C 1.38565 * 120.07637 * 0.02562 * 3 2 1 5 5 C 1.38242 * 119.99815 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.14884 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92759 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47387 * 89.99726 * 7 6 5 9 9 H 1.07996 * 119.99862 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99851 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99908 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00119 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47254 * 89.99456 * 12 10 8 14 14 H 1.48499 * 109.46968 * 209.99613 * 12 10 8 15 15 H 1.48499 * 109.47228 * 329.99358 * 12 10 8 16 16 C 1.38248 * 120.14817 * 359.76851 * 6 5 4 17 17 C 1.38565 * 119.99552 * 0.50974 * 16 6 5 18 18 O 1.35995 * 120.07439 * 179.74455 * 17 16 6 19 19 C 1.42903 * 116.99587 * 359.72507 * 18 17 16 20 20 C 1.53000 * 109.46726 * 180.02562 * 19 18 17 21 21 F 1.39892 * 109.47474 * 64.99778 * 20 19 18 22 22 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47392 * 300.00389 * 1 2 3 24 24 H 1.09002 * 109.46922 * 59.99615 * 1 2 3 25 25 H 1.07997 * 119.99773 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.92435 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47412 * 210.00067 * 7 6 5 28 28 H 1.09000 * 109.47112 * 329.99885 * 7 6 5 29 29 H 0.97005 * 120.00433 * 180.02562 * 11 10 8 30 30 H 1.07994 * 120.00428 * 180.27944 * 16 6 5 31 31 H 1.09002 * 109.47382 * 60.00075 * 19 18 17 32 32 H 1.09001 * 109.46938 * 300.00061 * 19 18 17 33 33 H 1.09002 * 109.46642 * 184.99995 * 20 19 18 34 34 H 1.09002 * 109.47069 * 304.99524 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 3.3028 3.6799 0.0016 7 6 3.9836 5.0244 0.0028 8 6 4.2100 5.4716 1.4239 9 1 3.8930 4.8448 2.2443 10 6 4.8227 6.6806 1.6768 11 7 5.0207 7.0707 2.9171 12 14 5.3715 7.7645 0.2579 13 1 4.2681 8.6844 -0.1179 14 1 6.5579 8.5568 0.6704 15 1 5.7251 6.9138 -0.9068 16 6 4.0603 2.5234 0.0064 17 6 3.4359 1.2864 0.0001 18 8 4.1795 0.1477 -0.0004 19 6 5.6003 0.3007 -0.0003 20 6 6.2618 -1.0789 -0.0016 21 9 5.9607 -1.7394 -1.1975 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2146 2.3197 0.0014 26 1 1.3341 4.5116 0.0019 27 1 4.9419 4.9469 -0.5108 28 1 3.3539 5.7509 -0.5108 29 1 5.4514 7.9215 3.0951 30 1 5.1385 2.5840 0.0114 31 1 5.9065 0.8501 0.8900 32 1 5.9065 0.8510 -0.8900 33 1 7.3420 -0.9639 0.0881 34 1 5.8874 -1.6621 0.8398 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216243581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:45 Heat of formation + Delta-G solvation = -128.766462 kcal Electronic energy + Delta-G solvation = -18398.849600 eV Core-core repulsion = 15210.920839 eV Total energy + Delta-G solvation = -3187.928761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.59540 -41.48169 -39.42829 -38.24686 -35.13064 -32.95407 -32.03543 -30.65144 -29.33345 -27.75346 -24.93594 -24.48345 -22.63217 -21.93846 -19.40681 -18.96374 -18.25216 -17.65692 -17.57645 -16.64946 -16.53294 -16.26103 -16.07963 -15.69251 -15.53307 -15.24970 -14.68288 -14.49730 -14.10310 -13.77126 -13.36136 -13.16718 -12.84411 -12.39304 -12.35230 -12.29967 -12.07279 -11.91803 -11.85516 -11.71973 -11.56791 -11.35617 -10.78198 -9.59638 -8.65535 -8.28933 -6.34420 0.37875 0.53686 1.38234 1.39551 1.51332 2.13978 2.36067 2.41795 2.81137 3.05350 3.55952 3.82006 3.92282 4.02062 4.06114 4.09511 4.28767 4.32271 4.44939 4.48946 4.52747 4.58470 4.72401 4.75853 4.86705 5.04411 5.10392 5.25905 5.37455 5.55157 5.76414 5.90422 6.10574 6.26819 6.63900 6.72139 7.29139 8.87349 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.006059 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.692246 B = 4620.118962 C = 5740.475828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.069 3.931 4 C -0.161 4.161 5 C -0.127 4.127 6 C -0.057 4.057 7 C 0.024 3.976 8 C -0.519 4.519 9 H 0.028 0.972 10 C 0.010 3.990 11 N -0.949 5.949 12 Si 0.949 3.051 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.245 1.245 16 C -0.178 4.178 17 C 0.085 3.915 18 O -0.320 6.320 19 C 0.011 3.989 20 C 0.070 3.930 21 F -0.232 7.232 22 H 0.119 0.881 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.163 0.837 26 H 0.133 0.867 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.267 0.733 30 H 0.137 0.863 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 -13.891 -8.076 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.024 3.976 4 C -0.180 4.180 5 C -0.145 4.145 6 C -0.057 4.057 7 C -0.013 4.013 8 C -0.557 4.557 9 H 0.046 0.954 10 C -0.188 4.188 11 N -0.589 5.589 12 Si 0.772 3.228 13 H -0.190 1.190 14 H -0.209 1.209 15 H -0.169 1.169 16 C -0.196 4.196 17 C 0.040 3.960 18 O -0.234 6.234 19 C -0.064 4.064 20 C 0.016 3.984 21 F -0.214 7.214 22 H 0.137 0.863 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.180 0.820 26 H 0.151 0.849 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.238 -14.177 -7.998 16.596 hybrid contribution 0.259 1.110 0.042 1.140 sum -2.978 -13.068 -7.956 15.586 Atomic orbital electron populations 1.23333 0.76736 1.05416 1.02159 1.86100 1.23141 1.25738 1.89588 1.18307 0.89054 0.85806 1.04467 1.21248 1.00937 0.90384 1.05402 1.20968 0.93825 0.97923 1.01808 1.19940 0.94193 0.95271 0.96346 1.18627 0.96058 0.90949 0.95692 1.21140 1.38846 1.04061 0.91663 0.95410 1.25956 0.95270 0.99108 0.98421 1.70056 1.44724 1.22761 1.21363 0.85671 0.78377 0.78899 0.79828 1.18957 1.20947 1.16852 1.21017 1.00683 0.90465 1.07479 1.18324 0.88786 0.85721 1.03137 1.86094 1.19190 1.28630 1.89528 1.23758 0.78721 1.00073 1.03861 1.22304 1.02354 0.89952 0.83835 1.92746 1.95383 1.82816 1.50411 0.86281 0.92047 0.91597 0.81988 0.84947 0.94996 0.94724 0.92360 0.84570 0.89321 0.90757 0.84763 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 16 2 O -0.33 -10.40 10.28 -79.64 -0.82 -11.22 16 3 C 0.07 2.39 6.70 22.57 0.15 2.55 16 4 C -0.16 -5.16 9.04 22.35 0.20 -4.96 16 5 C -0.13 -4.72 9.69 22.27 0.22 -4.50 16 6 C -0.06 -2.40 5.07 -19.86 -0.10 -2.50 16 7 C 0.02 1.12 4.17 29.10 0.12 1.24 16 8 C -0.52 -29.64 9.65 25.60 0.25 -29.39 16 9 H 0.03 1.78 7.98 -2.91 -0.02 1.76 16 10 C 0.01 0.55 5.47 84.66 0.46 1.01 16 11 N -0.95 -58.68 13.96 21.45 0.30 -58.38 16 12 Si 0.95 42.92 27.47 68.60 1.88 44.80 16 13 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.25 -10.22 6.54 99.48 0.65 -9.57 16 16 C -0.18 -6.93 8.69 22.35 0.19 -6.73 16 17 C 0.09 3.17 6.70 22.57 0.15 3.32 16 18 O -0.32 -10.95 9.92 -79.63 -0.79 -11.74 16 19 C 0.01 0.29 5.20 71.98 0.37 0.66 16 20 C 0.07 1.34 7.92 71.98 0.57 1.91 16 21 F -0.23 -6.10 17.35 44.97 0.78 -5.32 16 22 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.11 7.66 -2.38 -0.02 1.09 16 24 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 25 H 0.16 3.89 6.30 -2.91 -0.02 3.88 16 26 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 27 H 0.03 1.44 7.14 -2.39 -0.02 1.43 16 28 H 0.03 1.54 7.51 -2.39 -0.02 1.52 16 29 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 30 H 0.14 4.95 6.30 -2.91 -0.02 4.93 16 31 H 0.09 2.14 7.65 -2.39 -0.02 2.12 16 32 H 0.07 1.85 7.68 -2.39 -0.02 1.83 16 33 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -72.45 294.51 6.10 -66.34 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.04 Total: 11.44 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 3.70 Total: -35.93 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.30 Total: -58.38 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -1.61 Total: -22.96 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.78 Total: -5.32 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Total: -72.45 6.10 -66.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216243581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.422 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds