Wall clock time and date at job start Mon Mar 30 2020 06:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46475 * 2 1 4 4 C 1.36349 * 119.76583 * 264.71828 * 3 2 1 5 5 C 1.40807 * 120.01556 * 179.77747 * 4 3 2 6 6 C 1.41032 * 120.22057 * 180.27958 * 5 4 3 7 7 H 1.08001 * 120.00486 * 150.13453 * 6 5 4 8 8 C 1.39866 * 119.99548 * 330.14360 * 6 5 4 9 9 N 1.30934 * 119.99644 * 161.78287 * 8 6 5 10 10 Si 1.86794 * 120.00380 * 341.77415 * 8 6 5 11 11 H 1.48505 * 109.47193 * 95.41897 * 10 8 6 12 12 H 1.48498 * 109.47734 * 215.42198 * 10 8 6 13 13 H 1.48502 * 109.47013 * 335.42453 * 10 8 6 14 14 C 1.41408 * 119.56576 * 0.50634 * 5 4 3 15 15 O 1.35732 * 120.23110 * 179.77583 * 14 5 4 16 16 C 1.42899 * 117.00168 * 269.97672 * 15 14 5 17 17 C 1.38253 * 119.53700 * 359.74938 * 14 5 4 18 18 F 1.35101 * 120.01417 * 180.02562 * 17 14 5 19 19 C 1.39149 * 119.96888 * 0.02562 * 17 14 5 20 20 O 1.35743 * 119.77608 * 180.02562 * 19 17 14 21 21 C 1.42907 * 116.99855 * 269.97221 * 20 19 17 22 22 H 1.09007 * 109.46677 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47086 * 299.99495 * 1 2 3 24 24 H 1.08998 * 109.47590 * 60.00095 * 1 2 3 25 25 H 1.08998 * 109.47590 * 119.99905 * 2 1 3 26 26 H 1.08995 * 109.47086 * 240.00504 * 2 1 3 27 27 H 1.08000 * 119.99522 * 0.03765 * 4 3 2 28 28 H 0.97002 * 119.99698 * 179.97438 * 9 8 6 29 29 H 1.09002 * 109.47367 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.47103 * 300.00420 * 16 15 14 31 31 H 1.08998 * 109.47195 * 60.00025 * 16 15 14 32 32 H 1.08998 * 109.46475 * 60.00591 * 21 20 19 33 33 H 1.09004 * 109.46839 * 180.02562 * 21 20 19 34 34 H 1.08997 * 109.47220 * 300.00347 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3605 2.0228 -1.1786 5 6 2.8258 3.3518 -1.1851 6 6 3.1610 3.9805 -2.4022 7 1 3.0493 5.0497 -2.5065 8 6 3.6378 3.2194 -3.4743 9 7 3.6125 3.7101 -4.6880 10 14 4.3110 1.5029 -3.1749 11 1 3.2398 0.5024 -3.4134 12 1 5.4430 1.2464 -4.1012 13 1 4.7854 1.3951 -1.7718 14 6 2.9593 4.0503 0.0371 15 8 3.4109 5.3303 0.0469 16 6 4.8226 5.5194 0.1630 17 6 2.6263 3.4206 1.2220 18 9 2.7497 4.0791 2.3952 19 6 2.1639 2.1083 1.2056 20 8 1.8375 1.4939 2.3712 21 6 2.8772 0.7771 3.0400 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 2.2596 1.4816 -2.1077 28 1 3.9436 3.1824 -5.4315 29 1 5.0479 6.5858 0.1587 30 1 5.1727 5.0781 1.0961 31 1 5.3239 5.0384 -0.6769 32 1 3.6892 1.4610 3.2868 33 1 2.4830 0.3351 3.9552 34 1 3.2520 -0.0119 2.3880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216243649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:14 Heat of formation + Delta-G solvation = -113.880981 kcal Electronic energy + Delta-G solvation = -19595.549650 eV Core-core repulsion = 16408.266373 eV Total energy + Delta-G solvation = -3187.283278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.94495 -39.10373 -37.66997 -35.87421 -33.96808 -32.62811 -29.97035 -28.32241 -26.93469 -26.07481 -24.45338 -22.86864 -21.68191 -20.02720 -17.78762 -17.47303 -16.61311 -15.60465 -15.49410 -15.25216 -14.99284 -14.37035 -14.16662 -13.90032 -13.57835 -13.41092 -13.23606 -13.09482 -12.46964 -12.20923 -11.97672 -11.64768 -11.26263 -11.18111 -11.02303 -10.93838 -10.65129 -10.40867 -10.04851 -9.94773 -9.54330 -9.18055 -8.86684 -7.64310 -7.56971 -7.23957 -4.72742 2.07939 2.16805 2.91129 3.02250 3.10842 3.74339 3.89186 4.50349 4.83110 5.03410 5.21551 5.48388 5.56536 5.70673 5.76189 5.87222 5.91835 5.97321 6.07251 6.10208 6.16234 6.27340 6.27628 6.34870 6.50110 6.65621 6.80102 6.89820 6.91436 7.17234 7.49051 7.56127 8.02350 8.15253 8.32573 8.47764 8.73744 9.75740 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.011124 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.442756 B = 2516.465949 C = 3588.695218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 C -0.028 4.028 4 C -0.225 4.225 5 C 0.095 3.905 6 C -0.409 4.409 7 H 0.103 0.897 8 C 0.082 3.918 9 N -0.784 5.784 10 Si 0.909 3.091 11 H -0.263 1.263 12 H -0.286 1.286 13 H -0.242 1.242 14 C -0.050 4.050 15 O -0.315 6.315 16 C 0.034 3.966 17 C 0.116 3.884 18 F -0.148 7.148 19 C -0.076 4.076 20 O -0.318 6.318 21 C 0.027 3.973 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.291 0.709 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.079 0.921 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.212 -6.067 5.661 8.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.029 4.029 4 C -0.244 4.244 5 C 0.090 3.910 6 C -0.436 4.436 7 H 0.121 0.879 8 C -0.141 4.141 9 N -0.406 5.406 10 Si 0.734 3.266 11 H -0.189 1.189 12 H -0.213 1.213 13 H -0.166 1.166 14 C -0.096 4.096 15 O -0.231 6.231 16 C -0.061 4.061 17 C 0.096 3.904 18 F -0.126 7.126 19 C -0.121 4.121 20 O -0.234 6.234 21 C -0.068 4.068 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.989 -5.823 5.463 8.046 hybrid contribution 0.873 -0.697 0.085 1.120 sum 1.862 -6.520 5.548 8.762 Atomic orbital electron populations 1.21663 0.94836 1.00645 1.02555 1.20411 0.96384 0.93309 1.01463 1.19263 0.96655 0.94969 0.91985 1.20478 1.10353 0.97233 0.96366 1.17753 0.90351 0.90741 0.92117 1.19487 1.33724 0.98002 0.92355 0.87864 1.26311 0.93266 1.00568 0.93916 1.69724 1.31555 1.39241 1.00041 0.86335 0.78864 0.80774 0.80635 1.18894 1.21264 1.16553 1.18265 1.12693 0.88437 0.90216 1.86016 1.21306 1.22245 1.93531 1.22840 0.82911 1.00882 0.99457 1.18288 1.01273 0.90682 0.80173 1.91350 1.93840 1.80927 1.46520 1.17583 1.18664 0.90546 0.85285 1.86094 1.34416 1.68069 1.34838 1.22952 0.91960 0.95454 0.96438 0.93323 0.92052 0.92637 0.91655 0.91995 0.86890 0.89828 0.90380 0.95306 0.93512 0.94680 0.90222 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.89 37.16 0.37 -1.82 16 2 C -0.08 -1.36 5.76 -27.88 -0.16 -1.52 16 3 C -0.03 -0.59 5.11 -104.87 -0.54 -1.13 16 4 C -0.23 -5.17 6.71 -39.29 -0.26 -5.43 16 5 C 0.09 2.34 5.12 -106.66 -0.55 1.80 16 6 C -0.41 -10.53 9.18 -37.91 -0.35 -10.88 16 7 H 0.10 2.86 7.90 -52.49 -0.41 2.44 16 8 C 0.08 1.99 5.40 -17.33 -0.09 1.90 16 9 N -0.78 -19.40 13.93 55.54 0.77 -18.62 16 10 Si 0.91 19.16 24.51 -169.99 -4.17 14.99 16 11 H -0.26 -5.31 6.71 56.52 0.38 -4.93 16 12 H -0.29 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.24 -5.25 6.86 56.52 0.39 -4.86 16 14 C -0.05 -1.23 5.76 -38.37 -0.22 -1.45 16 15 O -0.31 -7.48 9.63 -18.90 -0.18 -7.66 16 16 C 0.03 0.66 11.13 101.05 1.12 1.79 16 17 C 0.12 2.74 7.31 -39.24 -0.29 2.45 16 18 F -0.15 -3.41 16.94 2.25 0.04 -3.37 16 19 C -0.08 -1.67 5.72 -38.81 -0.22 -1.89 16 20 O -0.32 -6.40 9.51 -18.94 -0.18 -6.58 16 21 C 0.03 0.43 10.78 101.05 1.09 1.52 16 22 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.06 1.06 6.37 -51.93 -0.33 0.72 16 26 H 0.06 1.01 8.03 -51.93 -0.42 0.60 16 27 H 0.11 2.52 4.71 -52.49 -0.25 2.28 16 28 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.04 0.55 7.15 -51.93 -0.37 0.18 16 LS Contribution 290.66 15.07 4.38 4.38 Total: -1.00 -27.19 290.66 -3.77 -30.96 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.33 Total: 0.60 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -0.09 Total: -14.68 kcal Atomic # 7 Polarization: -19.40 SS G_CDS: 0.77 Total: -18.62 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.36 Total: -14.24 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.37 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.17 Total: 14.99 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.19 -3.77 -30.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216243649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.925 kcal (2) G-P(sol) polarization free energy of solvation -27.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds