Wall clock time and date at job start Mon Mar 30 2020 06:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46475 * 2 1 4 4 C 1.36349 * 119.76583 * 264.71828 * 3 2 1 5 5 C 1.40807 * 120.01556 * 179.77747 * 4 3 2 6 6 C 1.41032 * 120.22057 * 180.27958 * 5 4 3 7 7 H 1.08001 * 120.00486 * 150.13453 * 6 5 4 8 8 C 1.39866 * 119.99548 * 330.14360 * 6 5 4 9 9 N 1.30934 * 119.99644 * 161.78287 * 8 6 5 10 10 Si 1.86794 * 120.00380 * 341.77415 * 8 6 5 11 11 H 1.48505 * 109.47193 * 95.41897 * 10 8 6 12 12 H 1.48498 * 109.47734 * 215.42198 * 10 8 6 13 13 H 1.48502 * 109.47013 * 335.42453 * 10 8 6 14 14 C 1.41408 * 119.56576 * 0.50634 * 5 4 3 15 15 O 1.35732 * 120.23110 * 179.77583 * 14 5 4 16 16 C 1.42899 * 117.00168 * 269.97672 * 15 14 5 17 17 C 1.38253 * 119.53700 * 359.74938 * 14 5 4 18 18 F 1.35101 * 120.01417 * 180.02562 * 17 14 5 19 19 C 1.39149 * 119.96888 * 0.02562 * 17 14 5 20 20 O 1.35743 * 119.77608 * 180.02562 * 19 17 14 21 21 C 1.42907 * 116.99855 * 269.97221 * 20 19 17 22 22 H 1.09007 * 109.46677 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47086 * 299.99495 * 1 2 3 24 24 H 1.08998 * 109.47590 * 60.00095 * 1 2 3 25 25 H 1.08998 * 109.47590 * 119.99905 * 2 1 3 26 26 H 1.08995 * 109.47086 * 240.00504 * 2 1 3 27 27 H 1.08000 * 119.99522 * 0.03765 * 4 3 2 28 28 H 0.97002 * 119.99698 * 179.97438 * 9 8 6 29 29 H 1.09002 * 109.47367 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.47103 * 300.00420 * 16 15 14 31 31 H 1.08998 * 109.47195 * 60.00025 * 16 15 14 32 32 H 1.08998 * 109.46475 * 60.00591 * 21 20 19 33 33 H 1.09004 * 109.46839 * 180.02562 * 21 20 19 34 34 H 1.08997 * 109.47220 * 300.00347 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3605 2.0228 -1.1786 5 6 2.8258 3.3518 -1.1851 6 6 3.1610 3.9805 -2.4022 7 1 3.0493 5.0497 -2.5065 8 6 3.6378 3.2194 -3.4743 9 7 3.6125 3.7101 -4.6880 10 14 4.3110 1.5029 -3.1749 11 1 3.2398 0.5024 -3.4134 12 1 5.4430 1.2464 -4.1012 13 1 4.7854 1.3951 -1.7718 14 6 2.9593 4.0503 0.0371 15 8 3.4109 5.3303 0.0469 16 6 4.8226 5.5194 0.1630 17 6 2.6263 3.4206 1.2220 18 9 2.7497 4.0791 2.3952 19 6 2.1639 2.1083 1.2056 20 8 1.8375 1.4939 2.3712 21 6 2.8772 0.7771 3.0400 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 2.2596 1.4816 -2.1077 28 1 3.9436 3.1824 -5.4315 29 1 5.0479 6.5858 0.1587 30 1 5.1727 5.0781 1.0961 31 1 5.3239 5.0384 -0.6769 32 1 3.6892 1.4610 3.2868 33 1 2.4830 0.3351 3.9552 34 1 3.2520 -0.0119 2.3880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216243649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:14 Heat of formation + Delta-G solvation = -130.198930 kcal Electronic energy + Delta-G solvation = -19596.257250 eV Core-core repulsion = 16408.266373 eV Total energy + Delta-G solvation = -3187.990877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.76998 -40.82370 -39.36878 -37.56437 -35.69841 -34.19853 -31.75267 -29.93104 -28.43241 -27.65159 -26.15427 -24.37914 -23.43803 -21.70058 -19.58817 -19.18269 -18.34823 -17.36794 -17.22814 -16.99073 -16.64193 -15.94419 -15.77869 -15.59278 -15.14655 -14.96288 -14.83943 -14.63408 -13.98110 -13.86459 -13.54215 -13.22154 -12.86432 -12.74645 -12.57298 -12.47053 -12.11127 -11.92696 -11.72916 -11.56564 -11.27212 -10.78203 -10.59926 -9.45446 -9.32891 -9.04891 -6.62665 0.33324 0.35373 1.22686 1.35781 1.44676 2.03471 2.18619 2.77538 3.18426 3.26610 3.45222 3.98407 4.17896 4.35935 4.44132 4.47664 4.54446 4.56140 4.57416 4.59439 4.72646 4.73939 4.83587 4.97520 5.06138 5.09421 5.15755 5.17810 5.42740 5.47095 5.74296 5.79710 6.08467 6.31255 6.57737 6.67896 6.95783 8.01297 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.011124 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.442756 B = 2516.465949 C = 3588.695218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 C -0.030 4.030 4 C -0.228 4.228 5 C 0.081 3.919 6 C -0.442 4.442 7 H 0.063 0.937 8 C 0.052 3.948 9 N -0.821 5.821 10 Si 0.956 3.044 11 H -0.242 1.242 12 H -0.271 1.271 13 H -0.252 1.252 14 C -0.065 4.065 15 O -0.339 6.339 16 C 0.033 3.967 17 C 0.094 3.906 18 F -0.148 7.148 19 C -0.058 4.058 20 O -0.330 6.330 21 C 0.022 3.978 22 H 0.081 0.919 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.302 0.698 29 H 0.108 0.892 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.029 0.971 33 H 0.116 0.884 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 -8.924 6.941 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C -0.030 4.030 4 C -0.248 4.248 5 C 0.078 3.922 6 C -0.469 4.469 7 H 0.081 0.919 8 C -0.167 4.167 9 N -0.445 5.445 10 Si 0.778 3.222 11 H -0.166 1.166 12 H -0.197 1.197 13 H -0.175 1.175 14 C -0.111 4.111 15 O -0.256 6.256 16 C -0.062 4.062 17 C 0.074 3.926 18 F -0.127 7.127 19 C -0.103 4.103 20 O -0.246 6.246 21 C -0.072 4.072 22 H 0.100 0.900 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.139 0.861 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.134 0.866 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.971 -8.677 6.748 11.035 hybrid contribution 0.838 0.217 -0.087 0.871 sum 1.809 -8.460 6.662 10.918 Atomic orbital electron populations 1.21642 0.93514 1.02584 1.01619 1.20547 0.97418 0.90560 1.03102 1.19678 0.95493 0.97038 0.90836 1.20615 1.10182 0.96466 0.97491 1.17913 0.90669 0.91903 0.91763 1.19283 1.37188 0.96376 0.94092 0.91857 1.26932 0.92816 1.03658 0.93252 1.69733 1.32928 1.40968 1.00829 0.85617 0.79254 0.77231 0.80111 1.16624 1.19692 1.17546 1.18531 1.13152 0.88664 0.90724 1.85930 1.23645 1.22315 1.93695 1.23021 0.80669 1.02951 0.99525 1.18502 1.02576 0.91574 0.79964 1.91335 1.93979 1.81110 1.46299 1.17778 1.15856 0.90058 0.86597 1.86026 1.36204 1.68325 1.34085 1.23218 0.91093 0.95239 0.97682 0.89982 0.93137 0.93471 0.89909 0.90483 0.86141 0.88734 0.87341 0.94205 0.94467 0.95184 0.86604 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.89 71.98 0.71 -3.08 16 2 C -0.08 -2.44 5.76 29.85 0.17 -2.27 16 3 C -0.03 -1.20 5.11 -20.02 -0.10 -1.30 16 4 C -0.23 -10.27 6.71 22.46 0.15 -10.12 16 5 C 0.08 4.11 5.12 -21.19 -0.11 4.00 16 6 C -0.44 -23.81 9.18 23.35 0.21 -23.60 16 7 H 0.06 3.79 7.90 -2.91 -0.02 3.76 16 8 C 0.05 2.59 5.40 85.22 0.46 3.05 16 9 N -0.82 -41.71 13.93 21.82 0.30 -41.41 16 10 Si 0.96 38.49 24.51 68.60 1.68 40.17 16 11 H -0.24 -8.85 6.71 99.48 0.67 -8.18 16 12 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 13 H -0.25 -10.43 6.86 99.48 0.68 -9.75 16 14 C -0.07 -3.25 5.76 23.05 0.13 -3.12 16 15 O -0.34 -16.60 9.63 -90.55 -0.87 -17.48 16 16 C 0.03 1.28 11.13 113.37 1.26 2.54 16 17 C 0.09 4.41 7.31 22.49 0.16 4.57 16 18 F -0.15 -6.80 16.94 44.97 0.76 -6.03 16 19 C -0.06 -2.45 5.72 22.77 0.13 -2.32 16 20 O -0.33 -12.31 9.51 -90.68 -0.86 -13.17 16 21 C 0.02 0.62 10.78 113.37 1.22 1.84 16 22 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 23 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 2.28 6.37 -2.39 -0.02 2.26 16 26 H 0.08 2.18 8.03 -2.39 -0.02 2.16 16 27 H 0.12 5.17 4.71 -2.91 -0.01 5.16 16 28 H 0.30 13.52 8.30 -92.71 -0.77 12.75 16 29 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.05 1.32 7.15 -2.39 -0.02 1.30 16 Total: -1.00 -59.96 290.66 6.47 -53.49 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.04 Total: 14.23 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 4.41 Total: -29.80 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.30 Total: -41.41 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.73 Total: -30.65 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.76 Total: -6.03 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.68 Total: 40.17 kcal Total: -59.96 6.47 -53.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216243649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.706 kcal (2) G-P(sol) polarization free energy of solvation -59.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds