Wall clock time and date at job start Mon Mar 30 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38492 * 126.47594 * 2 1 4 4 C 1.39993 * 127.07876 * 0.03695 * 3 2 1 5 5 H 1.08001 * 120.00178 * 34.10985 * 4 3 2 6 6 C 1.40052 * 120.00083 * 214.11059 * 4 3 2 7 7 N 1.30881 * 119.99888 * 20.92800 * 6 4 3 8 8 Si 1.86798 * 119.99936 * 200.93143 * 6 4 3 9 9 H 1.48502 * 109.47030 * 89.99794 * 8 6 4 10 10 H 1.48497 * 109.47055 * 209.99588 * 8 6 4 11 11 H 1.48493 * 109.47159 * 330.00020 * 8 6 4 12 12 C 1.39800 * 105.84677 * 179.91437 * 3 2 1 13 13 Cl 1.73603 * 126.28876 * 180.10619 * 12 3 2 14 14 N 1.33119 * 107.42574 * 0.35225 * 12 3 2 15 15 C 1.31000 * 109.98675 * 359.77643 * 14 12 3 16 16 C 1.50694 * 125.14719 * 180.02562 * 15 14 12 17 17 C 1.54269 * 110.03678 * 57.14462 * 16 15 14 18 18 C 1.54887 * 104.19604 * 217.10496 * 17 16 15 19 19 C 1.54888 * 102.75039 * 37.93862 * 18 17 16 20 20 C 1.53873 * 110.03347 * 299.97352 * 16 15 14 21 21 H 1.09000 * 109.46988 * 269.68599 * 1 2 3 22 22 H 1.09002 * 109.46970 * 149.69040 * 1 2 3 23 23 H 1.08995 * 109.47412 * 29.68756 * 1 2 3 24 24 H 0.97003 * 120.00269 * 180.02562 * 7 6 4 25 25 H 1.09006 * 110.01378 * 178.58233 * 16 15 14 26 26 H 1.09001 * 110.48410 * 335.78138 * 17 16 15 27 27 H 1.08997 * 110.48646 * 98.42404 * 17 16 15 28 28 H 1.09008 * 110.75317 * 279.62555 * 18 17 16 29 29 H 1.08997 * 110.75644 * 156.25685 * 18 17 16 30 30 H 1.09001 * 110.48335 * 203.38172 * 19 18 17 31 31 H 1.08992 * 110.60126 * 80.79370 * 19 18 17 32 32 H 1.09007 * 110.03208 * 238.57327 * 20 16 15 33 33 H 1.09000 * 110.03424 * 359.95662 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2884 1.1136 0.0000 4 6 1.8921 2.4563 0.0007 5 1 0.9967 2.7548 0.5258 6 6 2.6566 3.4125 -0.6795 7 7 3.4756 3.0399 -1.6299 8 14 2.5074 5.2194 -0.2301 9 1 3.4929 5.5487 0.8309 10 1 2.7756 6.0517 -1.4303 11 1 1.1352 5.4943 0.2664 12 6 3.5967 0.6211 0.0020 13 17 5.0513 1.5687 0.0055 14 7 3.5224 -0.7080 -0.0047 15 6 2.2682 -1.0863 -0.0060 16 6 1.7934 -2.5165 -0.0124 17 6 2.3737 -3.2715 1.2013 18 6 2.6727 -4.6909 0.6582 19 6 3.1898 -4.4070 -0.7739 20 6 2.3123 -3.2385 -1.2683 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3633 -0.8872 -0.5186 23 1 -0.3634 0.8927 -0.5089 24 1 4.0055 3.7021 -2.1008 25 1 0.7041 -2.5481 0.0132 26 1 3.2910 -2.7935 1.5450 27 1 1.6414 -3.3179 2.0074 28 1 1.7641 -5.2925 0.6287 29 1 3.4415 -5.1794 1.2568 30 1 3.0531 -5.2821 -1.4092 31 1 4.2391 -4.1131 -0.7515 32 1 1.4749 -3.6212 -1.8518 33 1 2.9069 -2.5542 -1.8735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221782338.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:40 Heat of formation + Delta-G solvation = 24.622451 kcal Electronic energy + Delta-G solvation = -16964.195327 eV Core-core repulsion = 14243.547135 eV Total energy + Delta-G solvation = -2720.648192 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.27581 -37.30043 -34.65799 -33.49351 -32.50912 -29.88864 -28.26300 -27.71880 -25.76332 -23.98759 -20.70212 -20.25078 -19.92878 -18.04598 -16.93818 -15.98375 -15.15069 -14.78213 -14.55646 -14.13694 -13.43115 -12.92609 -12.78502 -12.49038 -12.18903 -11.85460 -11.56881 -11.26079 -11.03761 -10.82094 -10.74901 -10.67884 -10.66066 -10.29179 -10.24422 -10.10797 -9.96091 -9.65738 -8.77536 -8.37896 -8.04142 -6.80543 -6.48825 -4.29545 3.01156 3.15679 3.16011 3.54879 3.77309 4.03726 4.37736 4.45690 5.01451 5.11082 5.16394 5.18672 5.62077 5.69243 5.82595 5.87601 5.91175 5.98729 6.03292 6.07198 6.15491 6.25463 6.29836 6.42023 6.65215 6.76188 6.80375 7.06977 7.19980 7.55026 7.73893 8.34031 8.41754 8.87403 8.96153 9.63796 10.33728 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.033534 B = 0.006966 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.762361 B = 4018.693362 C = 4499.959325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.493 5.493 3 C 0.224 3.776 4 C -0.473 4.473 5 H 0.076 0.924 6 C 0.091 3.909 7 N -0.766 5.766 8 Si 0.907 3.093 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.266 1.266 12 C -0.045 4.045 13 Cl -0.049 7.049 14 N -0.463 5.463 15 C 0.113 3.887 16 C 0.015 3.985 17 C -0.112 4.112 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.110 4.110 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.280 0.720 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 -7.297 1.691 8.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.185 5.185 3 C 0.111 3.889 4 C -0.508 4.508 5 H 0.094 0.906 6 C -0.131 4.131 7 N -0.391 5.391 8 Si 0.732 3.268 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.190 1.190 12 C -0.199 4.199 13 Cl -0.021 7.021 14 N -0.183 5.183 15 C -0.141 4.141 16 C -0.006 4.006 17 C -0.150 4.150 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.149 4.149 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.523 -7.724 1.500 8.621 hybrid contribution -0.601 1.607 0.091 1.718 sum -4.124 -6.116 1.591 7.547 Atomic orbital electron populations 1.21495 0.79338 1.02766 1.01121 1.45104 1.05382 1.06821 1.61237 1.18296 0.87177 0.86570 0.96811 1.18102 1.11620 0.88870 1.32210 0.90620 1.25504 0.93870 1.00725 0.93022 1.69924 1.18182 1.36619 1.14332 0.86334 0.79619 0.81967 0.78913 1.19246 1.20494 1.18977 1.20333 0.85552 0.87508 1.26479 1.98164 1.35918 1.70365 1.97668 1.68803 1.18467 1.12860 1.18180 1.21679 0.85269 0.88949 1.18215 1.19768 0.97986 0.87572 0.95255 1.22425 1.01492 0.94526 0.96554 1.22471 1.00107 0.96934 0.96531 1.22296 1.00226 0.97326 0.95808 1.22147 0.98812 0.96896 0.97037 0.93073 0.91632 0.90386 0.90954 0.91450 0.90291 0.92586 0.92165 0.92052 0.92554 0.91371 0.92736 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 10.65 59.85 0.64 2.35 16 2 N -0.49 -11.45 3.20 -118.27 -0.38 -11.83 16 3 C 0.22 6.00 6.35 -83.61 -0.53 5.47 16 4 C -0.47 -12.41 8.80 -38.24 -0.34 -12.74 16 5 H 0.08 1.89 7.93 -52.49 -0.42 1.47 16 6 C 0.09 2.30 4.66 -17.28 -0.08 2.22 16 7 N -0.77 -20.24 10.62 55.56 0.59 -19.65 16 8 Si 0.91 19.12 29.61 -169.99 -5.03 14.09 16 9 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 10 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 12 C -0.04 -1.22 7.43 -16.41 -0.12 -1.35 16 13 Cl -0.05 -1.27 26.11 -51.86 -1.35 -2.63 16 14 N -0.46 -11.99 10.87 -6.92 -0.08 -12.06 16 15 C 0.11 2.57 6.12 -154.95 -0.95 1.62 16 16 C 0.01 0.26 3.26 -90.66 -0.30 -0.04 16 17 C -0.11 -1.77 6.35 -25.07 -0.16 -1.93 16 18 C -0.12 -1.61 6.91 -24.74 -0.17 -1.78 16 19 C -0.12 -1.68 6.83 -25.07 -0.17 -1.85 16 20 C -0.11 -1.80 6.45 -25.61 -0.17 -1.97 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.97 7.05 -51.93 -0.37 0.61 16 23 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 24 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 25 H 0.07 1.05 6.74 -51.93 -0.35 0.70 16 26 H 0.08 1.47 7.62 -51.93 -0.40 1.07 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.07 1.41 7.65 -51.93 -0.40 1.01 16 LS Contribution 285.70 15.07 4.31 4.31 Total: -1.00 -29.80 285.70 -8.72 -38.52 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.43 Total: -0.75 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.34 Total: -10.00 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.14 Total: -43.54 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.35 Total: -2.63 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.80 -8.72 -38.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221782338.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.143 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds