Wall clock time and date at job start Mon Mar 30 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38492 * 126.47594 * 2 1 4 4 C 1.39993 * 127.07876 * 0.03695 * 3 2 1 5 5 H 1.08001 * 120.00178 * 34.10985 * 4 3 2 6 6 C 1.40052 * 120.00083 * 214.11059 * 4 3 2 7 7 N 1.30881 * 119.99888 * 20.92800 * 6 4 3 8 8 Si 1.86798 * 119.99936 * 200.93143 * 6 4 3 9 9 H 1.48502 * 109.47030 * 89.99794 * 8 6 4 10 10 H 1.48497 * 109.47055 * 209.99588 * 8 6 4 11 11 H 1.48493 * 109.47159 * 330.00020 * 8 6 4 12 12 C 1.39800 * 105.84677 * 179.91437 * 3 2 1 13 13 Cl 1.73603 * 126.28876 * 180.10619 * 12 3 2 14 14 N 1.33119 * 107.42574 * 0.35225 * 12 3 2 15 15 C 1.31000 * 109.98675 * 359.77643 * 14 12 3 16 16 C 1.50694 * 125.14719 * 180.02562 * 15 14 12 17 17 C 1.54269 * 110.03678 * 57.14462 * 16 15 14 18 18 C 1.54887 * 104.19604 * 217.10496 * 17 16 15 19 19 C 1.54888 * 102.75039 * 37.93862 * 18 17 16 20 20 C 1.53873 * 110.03347 * 299.97352 * 16 15 14 21 21 H 1.09000 * 109.46988 * 269.68599 * 1 2 3 22 22 H 1.09002 * 109.46970 * 149.69040 * 1 2 3 23 23 H 1.08995 * 109.47412 * 29.68756 * 1 2 3 24 24 H 0.97003 * 120.00269 * 180.02562 * 7 6 4 25 25 H 1.09006 * 110.01378 * 178.58233 * 16 15 14 26 26 H 1.09001 * 110.48410 * 335.78138 * 17 16 15 27 27 H 1.08997 * 110.48646 * 98.42404 * 17 16 15 28 28 H 1.09008 * 110.75317 * 279.62555 * 18 17 16 29 29 H 1.08997 * 110.75644 * 156.25685 * 18 17 16 30 30 H 1.09001 * 110.48335 * 203.38172 * 19 18 17 31 31 H 1.08992 * 110.60126 * 80.79370 * 19 18 17 32 32 H 1.09007 * 110.03208 * 238.57327 * 20 16 15 33 33 H 1.09000 * 110.03424 * 359.95662 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2884 1.1136 0.0000 4 6 1.8921 2.4563 0.0007 5 1 0.9967 2.7548 0.5258 6 6 2.6566 3.4125 -0.6795 7 7 3.4756 3.0399 -1.6299 8 14 2.5074 5.2194 -0.2301 9 1 3.4929 5.5487 0.8309 10 1 2.7756 6.0517 -1.4303 11 1 1.1352 5.4943 0.2664 12 6 3.5967 0.6211 0.0020 13 17 5.0513 1.5687 0.0055 14 7 3.5224 -0.7080 -0.0047 15 6 2.2682 -1.0863 -0.0060 16 6 1.7934 -2.5165 -0.0124 17 6 2.3737 -3.2715 1.2013 18 6 2.6727 -4.6909 0.6582 19 6 3.1898 -4.4070 -0.7739 20 6 2.3123 -3.2385 -1.2683 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3633 -0.8872 -0.5186 23 1 -0.3634 0.8927 -0.5089 24 1 4.0055 3.7021 -2.1008 25 1 0.7041 -2.5481 0.0132 26 1 3.2910 -2.7935 1.5450 27 1 1.6414 -3.3179 2.0074 28 1 1.7641 -5.2925 0.6287 29 1 3.4415 -5.1794 1.2568 30 1 3.0531 -5.2821 -1.4092 31 1 4.2391 -4.1131 -0.7515 32 1 1.4749 -3.6212 -1.8518 33 1 2.9069 -2.5542 -1.8735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221782338.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:39 Heat of formation + Delta-G solvation = 8.018754 kcal Electronic energy + Delta-G solvation = -16964.915317 eV Core-core repulsion = 14243.547135 eV Total energy + Delta-G solvation = -2721.368182 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.08037 -38.59648 -36.64159 -35.38877 -34.26687 -31.48916 -29.48386 -29.34922 -27.38129 -25.79165 -22.32262 -21.74983 -21.37126 -19.66899 -18.77050 -17.60581 -16.83951 -16.23422 -16.02476 -15.69113 -15.09839 -14.60427 -14.16169 -14.06989 -13.78536 -13.44792 -13.15077 -12.99825 -12.64502 -12.39404 -12.23965 -11.92217 -11.86525 -11.82582 -11.78924 -11.69192 -11.40359 -11.30730 -10.68141 -10.30800 -9.88969 -8.71962 -8.39941 -6.26195 1.29654 1.43048 1.53084 1.76221 1.90043 2.26715 2.53823 2.68592 3.23622 3.74073 3.88877 3.90786 4.24219 4.43436 4.50165 4.57156 4.64971 4.75284 4.75786 4.79780 4.92409 5.03896 5.13947 5.16807 5.28446 5.29468 5.41800 5.57561 5.59730 5.66801 5.87324 6.39006 6.57342 6.94178 7.15356 7.75244 8.47256 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.033534 B = 0.006966 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.762361 B = 4018.693362 C = 4499.959325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.500 5.500 3 C 0.194 3.806 4 C -0.497 4.497 5 H 0.080 0.920 6 C 0.054 3.946 7 N -0.802 5.802 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.271 1.271 11 H -0.253 1.253 12 C -0.083 4.083 13 Cl -0.055 7.055 14 N -0.501 5.501 15 C 0.136 3.864 16 C 0.009 3.991 17 C -0.111 4.111 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.109 4.109 21 H 0.073 0.927 22 H 0.099 0.901 23 H 0.073 0.927 24 H 0.283 0.717 25 H 0.097 0.903 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 -8.771 2.077 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.192 5.192 3 C 0.080 3.920 4 C -0.531 4.531 5 H 0.098 0.902 6 C -0.165 4.165 7 N -0.427 5.427 8 Si 0.794 3.206 9 H -0.197 1.197 10 H -0.196 1.196 11 H -0.177 1.177 12 C -0.235 4.235 13 Cl -0.027 7.027 14 N -0.222 5.222 15 C -0.121 4.121 16 C -0.012 4.012 17 C -0.149 4.149 18 C -0.148 4.148 19 C -0.155 4.155 20 C -0.147 4.147 21 H 0.091 0.909 22 H 0.117 0.883 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.660 -9.188 1.888 10.956 hybrid contribution 0.010 1.911 -0.042 1.912 sum -5.650 -7.277 1.846 9.396 Atomic orbital electron populations 1.21838 0.76165 1.04259 1.03015 1.45457 1.07448 1.05970 1.60320 1.18574 0.87699 0.87812 0.97889 1.18350 1.12418 0.89324 1.33033 0.90202 1.26312 0.93149 1.04671 0.92386 1.69998 1.19238 1.38084 1.15418 0.85340 0.79902 0.76748 0.78611 1.19667 1.19562 1.17671 1.20726 0.86027 0.88387 1.28325 1.98128 1.36230 1.70600 1.97749 1.68809 1.20525 1.12368 1.20513 1.22821 0.84626 0.91025 1.13643 1.20141 0.99776 0.84435 0.96803 1.22381 1.00245 0.95876 0.96432 1.22448 1.01759 0.95330 0.95235 1.22292 0.98454 0.97440 0.97312 1.22124 0.99623 0.96759 0.96207 0.90891 0.88264 0.90805 0.90699 0.88453 0.93910 0.90607 0.89100 0.90989 0.89654 0.93742 0.89742 0.95036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.95 10.65 127.77 1.36 4.32 16 2 N -0.50 -23.01 3.20 -528.10 -1.69 -24.70 16 3 C 0.19 10.59 6.35 38.89 0.25 10.84 16 4 C -0.50 -26.42 8.80 23.14 0.20 -26.21 16 5 H 0.08 4.01 7.93 -2.91 -0.02 3.99 16 6 C 0.05 2.74 4.66 85.27 0.40 3.14 16 7 N -0.80 -43.45 10.62 21.85 0.23 -43.21 16 8 Si 0.97 39.37 29.61 68.60 2.03 41.40 16 9 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 10 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 12 C -0.08 -4.70 7.43 84.88 0.63 -4.07 16 13 Cl -0.05 -2.96 26.11 -2.72 -0.07 -3.03 16 14 N -0.50 -26.69 10.87 -175.80 -1.91 -28.60 16 15 C 0.14 6.14 6.12 137.96 0.84 6.99 16 16 C 0.01 0.28 3.26 -10.82 -0.04 0.25 16 17 C -0.11 -3.26 6.35 31.67 0.20 -3.06 16 18 C -0.11 -2.48 6.91 31.88 0.22 -2.26 16 19 C -0.12 -3.03 6.83 31.67 0.22 -2.81 16 20 C -0.11 -3.31 6.45 31.32 0.20 -3.11 16 21 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.10 2.58 7.05 -2.39 -0.02 2.56 16 23 H 0.07 2.51 7.90 -2.39 -0.02 2.49 16 24 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 25 H 0.10 2.61 6.74 -2.38 -0.02 2.59 16 26 H 0.04 1.57 7.62 -2.39 -0.02 1.55 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.03 1.21 7.65 -2.39 -0.02 1.19 16 Total: -1.00 -67.52 285.70 4.18 -63.33 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.10 Total: 10.80 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 4.49 Total: -15.99 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -3.37 Total: -96.51 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -0.07 Total: -3.03 kcal Total: -67.52 4.18 -63.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221782338.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.352 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds