Wall clock time and date at job start Mon Mar 30 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47284 * 2 1 4 4 C 1.50701 * 109.47064 * 119.99907 * 2 1 3 5 5 H 1.08003 * 119.99782 * 120.00000 * 4 2 1 6 6 C 1.37876 * 120.00064 * 300.00150 * 4 2 1 7 7 N 1.31513 * 119.99692 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99967 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46734 * 90.00462 * 8 6 4 10 10 H 1.48503 * 109.47235 * 210.00171 * 8 6 4 11 11 H 1.48495 * 109.47328 * 330.00791 * 8 6 4 12 12 N 1.46903 * 109.46820 * 239.99973 * 2 1 3 13 13 C 1.46904 * 110.99745 * 183.95550 * 12 2 1 14 14 C 1.40012 * 111.00033 * 60.00429 * 12 2 1 15 15 C 1.38662 * 120.09328 * 59.97531 * 14 12 2 16 16 C 1.38359 * 119.98773 * 180.02562 * 15 14 12 17 17 Cl 1.73602 * 119.91630 * 179.97438 * 16 15 14 18 18 C 1.38356 * 120.16517 * 359.97438 * 16 15 14 19 19 C 1.38270 * 120.18434 * 0.02562 * 18 16 15 20 20 C 1.38649 * 120.00629 * 359.97438 * 19 18 16 21 21 N 1.40092 * 120.07936 * 180.27888 * 20 19 18 22 22 H 1.09007 * 109.47068 * 300.00132 * 1 2 3 23 23 H 1.09003 * 109.47206 * 59.99606 * 1 2 3 24 24 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 25 25 H 0.96998 * 119.99797 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46981 * 296.04411 * 13 12 2 27 27 H 1.08996 * 109.46919 * 56.04445 * 13 12 2 28 28 H 1.08998 * 109.47022 * 176.05040 * 13 12 2 29 29 H 1.07997 * 120.00381 * 359.97438 * 15 14 12 30 30 H 1.08000 * 119.90715 * 179.97438 * 18 16 15 31 31 H 1.07998 * 119.99613 * 180.02562 * 19 18 16 32 32 H 0.97003 * 119.99640 * 179.72646 * 21 20 19 33 33 H 0.96999 * 120.00430 * 359.72494 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8490 2.1772 1.4922 12 7 2.0196 -0.6925 -1.1995 13 6 3.4850 -0.7946 -1.1871 14 6 1.5707 -0.0576 -2.3638 15 6 1.9078 1.2650 -2.6086 16 6 1.4626 1.8904 -3.7596 17 17 1.8851 3.5465 -4.0639 18 6 0.6815 1.1993 -4.6687 19 6 0.3412 -0.1197 -4.4316 20 6 0.7833 -0.7537 -3.2806 21 7 0.4443 -2.0918 -3.0417 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.9040 -0.5275 4.4375 26 1 3.9192 0.2043 -1.2301 27 1 3.8069 -1.2916 -0.2719 28 1 3.8163 -1.3722 -2.0501 29 1 2.5170 1.8070 -1.9005 30 1 0.3359 1.6918 -5.5657 31 1 -0.2684 -0.6564 -5.1435 32 1 0.7576 -2.5354 -2.2379 33 1 -0.1037 -2.5748 -3.6799 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228410916.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:42 Heat of formation + Delta-G solvation = 34.235914 kcal Electronic energy + Delta-G solvation = -17035.617479 eV Core-core repulsion = 14315.386158 eV Total energy + Delta-G solvation = -2720.231321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.75298 -36.76192 -36.01877 -33.87445 -32.78652 -30.46093 -29.47661 -28.00963 -25.32864 -24.37039 -22.56952 -21.44510 -19.62467 -17.30011 -16.79962 -16.34884 -15.80659 -15.24793 -14.35597 -14.25852 -13.83809 -13.53601 -13.26369 -13.01831 -12.58423 -12.19442 -12.03299 -11.84869 -11.63503 -11.48820 -10.95632 -10.75468 -10.64248 -10.48138 -10.18167 -9.91751 -9.55450 -9.15658 -8.63847 -8.52338 -7.66251 -7.13017 -6.12983 -4.12521 1.53909 1.68323 2.50237 3.24223 3.35828 3.36802 3.96161 4.19592 4.35458 4.56793 5.07480 5.19523 5.27949 5.60773 5.75148 5.92173 6.11721 6.16479 6.29558 6.32456 6.42320 6.43974 6.53349 6.58869 6.74682 6.84535 6.93758 7.20007 7.50289 7.67707 7.84511 8.10629 8.15551 8.59478 8.91500 9.48645 10.99262 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.007669 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.345799 B = 3650.221014 C = 4241.364545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.187 3.813 3 H 0.003 0.997 4 C -0.510 4.510 5 H 0.085 0.915 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 N -0.490 5.490 13 C 0.040 3.960 14 C 0.046 3.954 15 C -0.095 4.095 16 C -0.086 4.086 17 Cl -0.095 7.095 18 C -0.074 4.074 19 C -0.195 4.195 20 C 0.242 3.758 21 N -0.862 5.862 22 H 0.042 0.958 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.265 0.735 26 H 0.019 0.981 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.413 0.587 33 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 1.965 -15.345 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.082 3.918 3 H 0.020 0.980 4 C -0.548 4.548 5 H 0.103 0.897 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.212 5.212 13 C -0.107 4.107 14 C -0.053 4.053 15 C -0.117 4.117 16 C -0.116 4.116 17 Cl -0.066 7.066 18 C -0.094 4.094 19 C -0.219 4.219 20 C 0.133 3.867 21 N -0.400 5.400 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.244 0.756 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.900 1.620 -15.110 15.471 hybrid contribution -0.431 1.503 0.323 1.596 sum -3.331 3.122 -14.787 15.476 Atomic orbital electron populations 1.22107 0.98325 1.01102 0.98401 1.19778 0.91594 0.92700 0.87778 0.97953 1.20951 1.32259 1.13793 0.87819 0.89734 1.24883 0.95690 0.96526 0.95787 1.69868 1.45476 1.40205 0.97920 0.86924 0.80806 0.83906 0.77017 1.20514 1.22396 1.19281 1.59664 1.10593 1.51061 0.99858 1.22322 0.86312 0.99631 1.02438 1.18459 1.01460 0.90984 0.94411 1.21446 0.99397 0.95149 0.95691 1.20447 1.06591 0.85876 0.98641 1.98318 1.92849 1.19544 1.95913 1.20613 0.96841 0.93715 0.98207 1.20348 1.07717 0.95313 0.98476 1.17739 0.91614 0.85375 0.91932 1.42537 1.59433 1.09785 1.28250 0.93986 0.95272 0.92328 0.92530 0.96269 0.89234 0.93355 0.85445 0.85707 0.85653 0.75602 0.78177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.55 37.16 0.32 -2.82 16 2 C 0.19 4.32 1.43 -68.86 -0.10 4.23 16 3 H 0.00 0.07 6.18 -51.93 -0.32 -0.25 16 4 C -0.51 -13.69 8.46 -34.44 -0.29 -13.98 16 5 H 0.08 2.43 6.65 -52.48 -0.35 2.08 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16 8 Si 0.88 21.84 24.37 -169.99 -4.14 17.69 16 9 H -0.28 -6.74 6.87 56.52 0.39 -6.35 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.49 -9.65 3.78 -172.46 -0.65 -10.30 16 13 C 0.04 0.74 9.11 60.07 0.55 1.29 16 14 C 0.05 0.81 3.34 -83.51 -0.28 0.53 16 15 C -0.10 -1.66 8.36 -39.38 -0.33 -1.99 16 16 C -0.09 -1.33 6.32 -39.49 -0.25 -1.58 16 17 Cl -0.09 -1.36 28.95 -51.86 -1.50 -2.86 16 18 C -0.07 -1.00 9.82 -39.53 -0.39 -1.39 16 19 C -0.19 -2.55 9.89 -39.42 -0.39 -2.94 16 20 C 0.24 3.65 6.78 -83.47 -0.57 3.09 16 21 N -0.86 -11.14 9.09 32.55 0.30 -10.84 16 22 H 0.04 0.97 3.27 -51.92 -0.17 0.80 16 23 H 0.03 0.59 7.22 -51.93 -0.37 0.22 16 24 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.35 7.35 -51.93 -0.38 -0.03 16 27 H 0.09 1.83 6.10 -51.93 -0.32 1.51 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.13 2.34 7.02 -52.49 -0.37 1.97 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.41 5.90 8.11 -40.82 -0.33 5.57 16 33 H 0.39 3.79 8.85 -40.82 -0.36 3.42 16 LS Contribution 279.62 15.07 4.21 4.21 Total: -1.00 -28.90 279.62 -6.68 -35.58 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -3.85 Total: 6.03 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.82 Total: -13.60 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.42 Total: -47.06 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.69 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.50 Total: -2.86 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.90 -6.68 -35.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228410916.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.816 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds