Wall clock time and date at job start Mon Mar 30 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.46986 * 2 1 4 4 C 1.46900 * 110.99691 * 163.60392 * 3 2 1 5 5 C 1.50695 * 109.47802 * 287.71182 * 4 3 2 6 6 H 1.08006 * 119.99306 * 354.52382 * 5 4 3 7 7 C 1.37876 * 120.00564 * 174.80747 * 5 4 3 8 8 N 1.31516 * 119.99558 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00344 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47082 * 59.99511 * 9 7 5 11 11 H 1.48497 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46939 * 299.99812 * 9 7 5 13 13 C 1.39006 * 111.00508 * 287.56176 * 3 2 1 14 14 N 1.32421 * 119.70234 * 301.50584 * 13 3 2 15 15 C 1.31939 * 121.62361 * 179.97438 * 14 13 3 16 16 C 1.38066 * 120.85411 * 0.02618 * 15 14 13 17 17 C 1.38844 * 119.32760 * 359.97378 * 16 15 14 18 18 C 1.38337 * 118.50166 * 359.74989 * 17 16 15 19 19 C 1.50702 * 120.44979 * 180.26167 * 18 17 16 20 20 Cl 1.80299 * 109.47116 * 274.80598 * 19 18 17 21 21 H 1.09005 * 109.47106 * 185.36577 * 1 2 3 22 22 H 1.08999 * 109.47519 * 305.35801 * 1 2 3 23 23 H 1.08993 * 109.47329 * 65.36210 * 1 2 3 24 24 H 1.08994 * 109.46676 * 240.00076 * 2 1 3 25 25 H 1.09005 * 109.47163 * 120.00408 * 2 1 3 26 26 H 1.09001 * 109.46963 * 167.71054 * 4 3 2 27 27 H 1.08997 * 109.47045 * 47.71731 * 4 3 2 28 28 H 0.97005 * 119.99827 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.57603 * 179.97438 * 15 14 13 30 30 H 1.08004 * 120.33830 * 179.97438 * 16 15 14 31 31 H 1.07996 * 120.74667 * 180.02562 * 17 16 15 32 32 H 1.08997 * 109.46935 * 34.80433 * 19 18 17 33 33 H 1.08996 * 109.47374 * 154.80300 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4355 1.4427 0.3871 5 6 3.5652 1.1598 1.8616 6 1 2.6797 1.0449 2.4693 7 6 4.8141 1.0534 2.4360 8 7 5.8923 1.1983 1.6969 9 14 4.9749 0.7020 4.2636 10 1 4.3239 -0.5954 4.5773 11 1 6.4123 0.6356 4.6303 12 1 4.3160 1.7859 5.0358 13 6 1.8165 1.9852 -1.2372 14 7 2.3538 1.4495 -2.3225 15 6 2.1851 1.9872 -3.5155 16 6 1.4369 3.1366 -3.6748 17 6 0.8563 3.7298 -2.5618 18 6 1.0460 3.1399 -1.3249 19 6 0.4309 3.7433 -0.0886 20 17 1.5197 5.0260 0.5596 21 1 -0.3633 -1.0232 0.0961 22 1 -0.3634 0.5947 0.8381 23 1 -0.3633 0.4284 -0.9340 24 1 1.8932 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.8309 2.4353 0.1715 27 1 3.9969 0.6976 -0.1766 28 1 6.7710 1.1238 2.1010 29 1 2.6388 1.5227 -4.3785 30 1 1.3045 3.5698 -4.6552 31 1 0.2662 4.6289 -2.6600 32 1 -0.5356 4.1800 -0.3397 33 1 0.2944 2.9677 0.6650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233452537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:15 Heat of formation + Delta-G solvation = 10.651285 kcal Electronic energy + Delta-G solvation = -16934.204676 eV Core-core repulsion = 14212.950648 eV Total energy + Delta-G solvation = -2721.254027 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52459 -38.07394 -36.84516 -34.79787 -34.16267 -32.34905 -31.34221 -28.65340 -27.41106 -24.78018 -24.26644 -22.94826 -21.73274 -18.70155 -17.72878 -17.58549 -16.92307 -16.32682 -16.02570 -15.46256 -15.09028 -14.78293 -14.35860 -14.27302 -14.06129 -13.99928 -13.92736 -13.11346 -12.88530 -12.71863 -12.62942 -12.34118 -12.02237 -11.87037 -11.53197 -11.42108 -11.20236 -10.68804 -10.60767 -10.43790 -9.70880 -9.34491 -8.19167 -6.29861 0.01161 0.34294 1.41108 1.45213 1.52618 1.69519 2.40129 2.88345 3.02025 3.13679 3.51709 3.87192 3.94220 4.10401 4.20249 4.36129 4.45788 4.50174 4.60729 4.71630 4.90002 4.95853 5.03848 5.13398 5.18466 5.23178 5.26073 5.38934 5.62438 5.73951 6.06723 6.14152 6.70915 6.84366 7.09924 7.39192 8.92034 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.007713 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.158538 B = 3629.534748 C = 4044.693807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.058 3.942 3 N -0.486 5.486 4 C 0.236 3.764 5 C -0.516 4.516 6 H 0.069 0.931 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.300 3.700 14 N -0.554 5.554 15 C 0.098 3.902 16 C -0.174 4.174 17 C -0.052 4.052 18 C -0.148 4.148 19 C 0.032 3.968 20 Cl -0.200 7.200 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.044 0.956 24 H 0.023 0.977 25 H 0.068 0.932 26 H -0.014 1.014 27 H -0.035 1.035 28 H 0.263 0.737 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.173 0.827 32 H 0.133 0.867 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 4.366 -8.741 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.069 4.069 3 N -0.209 5.209 4 C 0.111 3.889 5 C -0.555 4.555 6 H 0.087 0.913 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.072 3.928 14 N -0.267 5.267 15 C -0.061 4.061 16 C -0.194 4.194 17 C -0.078 4.078 18 C -0.152 4.152 19 C -0.031 4.031 20 Cl -0.174 7.174 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.004 0.996 27 H -0.017 1.017 28 H 0.072 0.928 29 H 0.190 0.810 30 H 0.194 0.806 31 H 0.190 0.810 32 H 0.151 0.849 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.775 3.942 -8.223 16.519 hybrid contribution 1.001 0.007 0.166 1.015 sum -12.773 3.949 -8.057 15.610 Atomic orbital electron populations 1.21658 0.92852 1.02491 1.01535 1.22027 0.96884 0.87692 1.00282 1.60398 1.21122 1.18563 1.20822 1.19099 0.81379 0.93206 0.95191 1.21349 0.92570 1.47952 0.93588 0.91301 1.25942 0.95290 0.95111 1.03344 1.70122 0.98348 1.51241 1.37949 0.85421 0.76931 0.79257 0.78935 1.18865 1.21096 1.19217 1.20233 0.91495 0.92557 0.88485 1.67839 1.22001 1.35900 1.00923 1.23151 0.95011 0.93860 0.94039 1.22447 0.98908 0.96707 1.01312 1.21860 0.96595 0.98962 0.90429 1.20598 1.01664 0.96170 0.96720 1.23050 0.93263 0.91902 0.94875 1.98727 1.71764 1.58136 1.88765 0.90586 0.91539 0.93679 0.95862 0.91389 0.99559 1.01728 0.92820 0.80987 0.80588 0.80980 0.84922 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 9.90 71.98 0.71 -3.12 16 2 C 0.06 2.36 5.48 86.30 0.47 2.83 16 3 N -0.49 -21.65 3.28 -706.24 -2.31 -23.96 16 4 C 0.24 13.29 4.56 85.56 0.39 13.68 16 5 C -0.52 -29.85 8.33 25.60 0.21 -29.63 16 6 H 0.07 3.83 7.80 -2.91 -0.02 3.81 16 7 C 0.00 0.06 5.46 84.65 0.46 0.52 16 8 N -0.94 -58.56 13.29 21.45 0.28 -58.27 16 9 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 C 0.30 11.86 4.48 133.05 0.60 12.46 16 14 N -0.55 -21.82 9.47 -193.27 -1.83 -23.65 16 15 C 0.10 2.81 11.17 84.64 0.95 3.75 16 16 C -0.17 -3.78 10.10 22.37 0.23 -3.55 16 17 C -0.05 -1.21 9.87 22.44 0.22 -0.99 16 18 C -0.15 -4.59 5.29 -19.64 -0.10 -4.70 16 19 C 0.03 0.90 6.61 71.24 0.47 1.37 16 20 Cl -0.20 -6.82 29.13 -2.72 -0.08 -6.90 16 21 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 22 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 23 H 0.04 1.30 7.75 -2.39 -0.02 1.28 16 24 H 0.02 0.99 7.47 -2.39 -0.02 0.97 16 25 H 0.07 2.99 7.17 -2.38 -0.02 2.98 16 26 H -0.01 -0.86 7.97 -2.39 -0.02 -0.88 16 27 H -0.04 -2.24 8.05 -2.39 -0.02 -2.26 16 28 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 29 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 30 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 31 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.13 2.51 8.12 -2.39 -0.02 2.49 16 33 H 0.10 3.21 7.34 -2.39 -0.02 3.19 16 Total: -1.00 -72.63 297.71 3.79 -68.85 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 1.09 Total: 4.03 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.61 Total: -7.38 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -3.86 Total: -105.89 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -6.82 SS G_CDS: -0.08 Total: -6.90 kcal Total: -72.63 3.79 -68.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233452537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.500 kcal (2) G-P(sol) polarization free energy of solvation -72.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds