Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46975 * 2 1 4 4 C 1.50698 * 109.47009 * 119.99844 * 2 1 3 5 5 H 1.08006 * 120.00246 * 120.00075 * 4 2 1 6 6 C 1.37881 * 120.00246 * 299.99971 * 4 2 1 7 7 N 1.31513 * 119.99737 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99928 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47043 * 90.00351 * 8 6 4 10 10 H 1.48498 * 109.47117 * 209.99690 * 8 6 4 11 11 H 1.48497 * 109.47307 * 330.00137 * 8 6 4 12 12 N 1.46900 * 109.47233 * 239.99588 * 2 1 3 13 13 C 1.46900 * 111.00288 * 306.04727 * 12 2 1 14 14 C 1.39016 * 110.99407 * 70.00124 * 12 2 1 15 15 N 1.32425 * 119.70288 * 292.53757 * 14 12 2 16 16 C 1.31942 * 121.61970 * 179.75744 * 15 14 12 17 17 C 1.38069 * 120.85443 * 0.52657 * 16 15 14 18 18 C 1.38844 * 119.32665 * 359.74240 * 17 16 15 19 19 C 1.38337 * 118.50230 * 0.02562 * 18 17 16 20 20 C 1.50711 * 120.44591 * 180.02562 * 19 18 17 21 21 Cl 1.80295 * 109.46715 * 270.79799 * 20 19 18 22 22 H 1.09003 * 109.47220 * 299.99936 * 1 2 3 23 23 H 1.08996 * 109.47414 * 60.00093 * 1 2 3 24 24 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 25 25 H 0.96997 * 119.99946 * 180.02562 * 7 6 4 26 26 H 1.09007 * 109.46993 * 68.58918 * 13 12 2 27 27 H 1.08995 * 109.47101 * 188.58870 * 13 12 2 28 28 H 1.08998 * 109.47039 * 308.59618 * 13 12 2 29 29 H 1.07995 * 119.57254 * 180.25127 * 16 15 14 30 30 H 1.08000 * 120.33471 * 179.72315 * 17 16 15 31 31 H 1.07999 * 120.74547 * 179.97438 * 18 17 16 32 32 H 1.09002 * 109.46917 * 30.79281 * 20 19 18 33 33 H 1.08994 * 109.47018 * 150.79649 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3431 -0.9492 5.1121 11 1 2.4858 -2.5662 3.7120 12 7 2.0197 -0.6926 -1.1994 13 6 1.4344 -2.0356 -1.3077 14 6 1.7673 0.0548 -2.3440 15 7 0.5187 0.2401 -2.7446 16 6 0.2356 0.9465 -3.8224 17 6 1.2401 1.5126 -4.5820 18 6 2.5631 1.3375 -4.1991 19 6 2.8286 0.5959 -3.0619 20 6 4.2486 0.3787 -2.6060 21 17 4.9087 -1.1079 -3.3840 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7087 1.1613 3.4844 26 1 0.3689 -1.9513 -1.5219 27 1 1.9249 -2.5817 -2.1134 28 1 1.5749 -2.5700 -0.3682 29 1 -0.7948 1.0800 -4.1167 30 1 0.9990 2.0856 -5.4652 31 1 3.3669 1.7698 -4.7766 32 1 4.8566 1.2377 -2.8896 33 1 4.2684 0.2612 -1.5226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235068920.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = 41.175768 kcal Electronic energy + Delta-G solvation = -17089.268961 eV Core-core repulsion = 14369.338575 eV Total energy + Delta-G solvation = -2719.930386 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24676 -36.72467 -35.67998 -32.98728 -32.86157 -30.60622 -28.53764 -26.65195 -25.37832 -25.08604 -22.40450 -21.71391 -19.73561 -16.54616 -16.42882 -16.09535 -15.27020 -14.95450 -14.27501 -13.93959 -13.61707 -13.16542 -13.09880 -12.99332 -12.47641 -12.15485 -11.94894 -11.27296 -11.13229 -10.81339 -10.70350 -10.68972 -10.27797 -10.08419 -10.05994 -9.99334 -9.44705 -9.32540 -8.62397 -8.47104 -8.36282 -7.54065 -6.02241 -4.07297 1.23238 1.52713 2.82001 3.30771 3.37298 3.40890 4.12479 4.35772 4.57303 4.72663 4.98825 5.15244 5.16188 5.29544 5.45814 5.67952 5.71603 6.05479 6.20986 6.28250 6.40029 6.48944 6.69749 6.79569 6.93542 7.14273 7.23058 7.52148 7.72892 7.82276 8.01093 8.31223 8.38609 8.56477 8.97427 9.57349 11.04235 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.022749 B = 0.007590 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.501617 B = 3688.039803 C = 4425.979755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.219 3.781 3 H 0.033 0.967 4 C -0.502 4.502 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.491 5.491 13 C 0.042 3.958 14 C 0.340 3.660 15 N -0.501 5.501 16 C 0.111 3.889 17 C -0.197 4.197 18 C -0.058 4.058 19 C -0.143 4.143 20 C 0.031 3.969 21 Cl -0.188 7.188 22 H 0.081 0.919 23 H 0.036 0.964 24 H 0.029 0.971 25 H 0.260 0.740 26 H 0.036 0.964 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 1.149 -12.543 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.115 3.885 3 H 0.051 0.949 4 C -0.541 4.541 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.214 5.214 13 C -0.106 4.106 14 C 0.111 3.889 15 N -0.213 5.213 16 C -0.048 4.048 17 C -0.217 4.217 18 C -0.085 4.085 19 C -0.147 4.147 20 C -0.032 4.032 21 Cl -0.162 7.162 22 H 0.099 0.901 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.109 0.891 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.601 0.709 -11.887 12.189 hybrid contribution 0.027 0.113 0.254 0.280 sum 2.627 0.822 -11.633 11.954 Atomic orbital electron populations 1.22467 0.99223 0.99888 1.01452 1.19350 0.91153 0.93783 0.84227 0.94864 1.21058 1.30965 1.12704 0.89350 0.91702 1.24913 0.95119 0.95135 0.98983 1.69909 1.36689 1.23022 1.23446 0.86496 0.78450 0.80048 0.82396 1.20694 1.21377 1.19853 1.60697 1.57711 1.02697 1.00301 1.22185 0.97309 0.89172 1.01894 1.20264 0.86547 0.90569 0.91538 1.68202 1.22938 1.15936 1.14186 1.22652 0.99493 0.92503 0.90103 1.21948 0.93563 1.03885 1.02318 1.21350 0.97017 0.95588 0.94541 1.20410 0.95516 1.01712 0.97038 1.22937 0.90988 0.87357 1.01926 1.98696 1.87530 1.45534 1.84418 0.90066 0.94519 0.95236 0.92978 0.94561 0.93807 0.90036 0.83453 0.85267 0.85084 0.89131 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.05 37.16 0.30 -3.96 16 2 C 0.22 5.47 2.28 -68.86 -0.16 5.31 16 3 H 0.03 0.92 8.06 -51.93 -0.42 0.51 16 4 C -0.50 -13.44 7.84 -34.44 -0.27 -13.71 16 5 H 0.06 1.73 7.16 -52.48 -0.38 1.35 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.49 -10.52 3.64 -174.77 -0.64 -11.16 16 13 C 0.04 0.85 8.50 60.06 0.51 1.36 16 14 C 0.34 6.59 5.26 -155.00 -0.82 5.78 16 15 N -0.50 -9.47 6.93 -12.44 -0.09 -9.56 16 16 C 0.11 1.66 11.17 -17.57 -0.20 1.47 16 17 C -0.20 -2.51 10.10 -39.42 -0.40 -2.91 16 18 C -0.06 -0.78 9.85 -39.32 -0.39 -1.17 16 19 C -0.14 -2.33 5.29 -104.27 -0.55 -2.88 16 20 C 0.03 0.46 6.57 36.01 0.24 0.70 16 21 Cl -0.19 -2.86 29.13 -51.86 -1.51 -4.37 16 22 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 23 H 0.04 0.86 5.72 -51.93 -0.30 0.57 16 24 H 0.03 0.71 6.52 -51.93 -0.34 0.38 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.04 0.75 6.25 -51.93 -0.32 0.43 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.73 6.67 -51.93 -0.35 1.38 16 29 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.12 2.10 7.45 -51.93 -0.39 1.71 16 LS Contribution 284.72 15.07 4.29 4.29 Total: -1.00 -28.99 284.72 -8.21 -37.20 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.05 Total: 0.57 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -1.83 Total: -8.48 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.09 Total: -45.32 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -1.51 Total: -4.37 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.99 -8.21 -37.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235068920.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.372 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds