Wall clock time and date at job start Mon Mar 30 2020 06:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 O 1.42896 * 109.47231 * 120.00066 * 2 1 3 5 5 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 6 6 C 1.38257 * 119.95586 * 264.72927 * 5 2 1 7 7 C 1.38134 * 120.07614 * 179.72657 * 6 5 2 8 8 C 1.38766 * 119.99630 * 0.54745 * 7 6 5 9 9 O 1.35898 * 120.04348 * 179.75119 * 8 7 6 10 10 C 1.42901 * 117.00052 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47248 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46886 * 179.97438 * 11 10 9 13 13 H 1.07990 * 120.00352 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99291 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99395 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00628 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47127 * 89.99578 * 16 14 12 18 18 H 1.48501 * 109.47162 * 210.00091 * 16 14 12 19 19 H 1.48503 * 109.46847 * 329.99997 * 16 14 12 20 20 C 1.38673 * 119.91248 * 359.72450 * 8 7 6 21 21 C 1.38383 * 119.92386 * 0.02562 * 20 8 7 22 22 F 1.35093 * 119.99601 * 180.02562 * 21 20 8 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 0.96708 * 114.00101 * 59.99127 * 4 2 1 27 27 H 1.08003 * 119.96018 * 359.97438 * 6 5 2 28 28 H 1.08001 * 119.99692 * 180.25181 * 7 6 5 29 29 H 1.08999 * 109.46880 * 300.00387 * 10 9 8 30 30 H 1.09004 * 109.47208 * 59.99879 * 10 9 8 31 31 H 1.08999 * 109.47332 * 299.99909 * 11 10 9 32 32 H 1.09005 * 109.46963 * 60.00166 * 11 10 9 33 33 H 0.96999 * 119.99783 * 180.02562 * 15 14 12 34 34 H 1.08006 * 120.03442 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0323 -0.7104 -1.2305 6 6 2.3661 -2.0505 -1.1660 7 6 2.8214 -2.7056 -2.2937 8 6 2.9549 -2.0157 -3.4903 9 8 3.4076 -2.6580 -4.5991 10 6 3.7279 -4.0438 -4.4608 11 6 4.2173 -4.5906 -5.8033 12 6 4.5558 -6.0518 -5.6571 13 1 4.4344 -6.5414 -4.7023 14 6 5.0204 -6.7636 -6.7428 15 7 5.3153 -8.0390 -6.6154 16 14 5.2310 -5.9167 -8.3943 17 1 6.6019 -5.3541 -8.4908 18 1 5.0221 -6.9017 -9.4859 19 1 4.2364 -4.8211 -8.5192 20 6 2.6254 -0.6702 -3.5533 21 6 2.1647 -0.0187 -2.4227 22 9 1.8427 1.2920 -2.4826 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7209 -1.5953 1.2329 27 1 2.2670 -2.5868 -0.2338 28 1 3.0780 -3.7535 -2.2428 29 1 4.5120 -4.1625 -3.7129 30 1 2.8400 -4.5924 -4.1465 31 1 3.4336 -4.4718 -6.5514 32 1 5.1054 -4.0419 -6.1171 33 1 5.6425 -8.5397 -7.3790 34 1 2.7281 -0.1315 -4.4837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235239531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:56 Heat of formation + Delta-G solvation = -142.872313 kcal Electronic energy + Delta-G solvation = -18042.367978 eV Core-core repulsion = 14853.827542 eV Total energy + Delta-G solvation = -3188.540436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.05750 -41.24405 -39.44125 -37.40544 -35.40523 -33.10738 -32.35944 -31.71033 -29.63739 -27.18142 -24.80374 -24.11091 -22.58702 -21.96813 -19.86577 -18.88335 -18.08515 -17.96040 -17.16195 -17.07840 -16.61328 -16.27151 -16.07685 -15.84031 -15.46713 -14.93364 -14.68018 -14.39889 -14.00158 -13.80318 -13.65413 -13.31997 -12.99965 -12.85711 -12.49707 -12.39008 -12.09764 -11.97382 -11.79039 -11.53732 -11.43767 -11.21636 -10.81810 -9.97589 -9.22955 -8.35205 -6.41833 0.03736 0.17032 1.36113 1.37811 1.49671 2.09079 2.32737 2.45790 3.00236 3.23072 3.44243 3.50049 3.68141 3.94929 4.11484 4.14766 4.20572 4.21894 4.33863 4.37268 4.64608 4.72028 4.87368 4.91086 4.98595 5.08548 5.21412 5.24494 5.28777 5.29341 5.49976 5.66774 6.15335 6.35332 6.64428 6.75161 7.23622 8.80314 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.042158 B = 0.003932 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.009888 B = 7119.145910 C = 7636.204022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.156 3.844 3 H 0.102 0.898 4 O -0.566 6.566 5 C -0.194 4.194 6 C -0.038 4.038 7 C -0.219 4.219 8 C 0.145 3.855 9 O -0.330 6.330 10 C 0.084 3.916 11 C -0.008 4.008 12 C -0.536 4.536 13 H 0.046 0.954 14 C 0.015 3.985 15 N -0.942 5.942 16 Si 0.946 3.054 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.250 1.250 20 C -0.203 4.203 21 C 0.136 3.864 22 F -0.134 7.134 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.390 0.610 27 H 0.168 0.832 28 H 0.143 0.857 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.270 0.730 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.371 16.207 12.197 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.097 3.903 3 H 0.120 0.880 4 O -0.375 6.375 5 C -0.196 4.196 6 C -0.056 4.056 7 C -0.237 4.237 8 C 0.099 3.901 9 O -0.243 6.243 10 C 0.009 3.991 11 C -0.046 4.046 12 C -0.574 4.574 13 H 0.064 0.936 14 C -0.184 4.184 15 N -0.582 5.582 16 Si 0.769 3.231 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.174 1.174 20 C -0.222 4.222 21 C 0.117 3.883 22 F -0.113 7.113 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.241 0.759 27 H 0.185 0.815 28 H 0.161 0.839 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.022 16.737 12.017 22.493 hybrid contribution 0.085 -0.651 -1.089 1.271 sum -8.937 16.085 10.929 21.402 Atomic orbital electron populations 1.22434 0.93853 1.03664 1.03307 1.20559 0.94016 0.95373 0.80376 0.87976 1.86609 1.77544 1.30603 1.42701 1.20682 1.07315 0.95977 0.95593 1.20836 0.93759 0.92334 0.98659 1.21579 1.07440 1.02041 0.92671 1.18981 0.92842 0.91665 0.86657 1.86055 1.78905 1.26271 1.33113 1.22798 0.99743 0.76555 0.99960 1.19462 0.97015 0.94368 0.93727 1.21110 1.44706 0.93980 0.97587 0.93615 1.25849 0.94100 0.95269 1.03141 1.70021 1.45804 1.09453 1.32875 0.85714 0.79822 0.78949 0.78564 1.19087 1.20596 1.17404 1.20336 1.08670 0.93263 0.99947 1.17022 0.99439 0.78033 0.93804 1.91481 1.90245 1.32536 1.96997 0.90308 0.91772 0.91071 0.75941 0.81500 0.83909 0.91707 0.91560 0.95380 0.95563 0.92116 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.52 71.98 0.69 -1.69 16 2 C 0.16 2.67 3.60 29.85 0.11 2.78 16 3 H 0.10 1.86 7.79 -2.39 -0.02 1.84 16 4 O -0.57 -9.34 12.98 -148.98 -1.93 -11.27 16 5 C -0.19 -4.07 5.08 -19.80 -0.10 -4.17 16 6 C -0.04 -0.76 9.30 22.25 0.21 -0.56 16 7 C -0.22 -5.62 9.04 22.37 0.20 -5.42 16 8 C 0.14 4.41 6.69 22.50 0.15 4.56 16 9 O -0.33 -11.94 10.14 -92.40 -0.94 -12.88 16 10 C 0.08 3.20 4.68 71.98 0.34 3.54 16 11 C -0.01 -0.38 4.41 29.85 0.13 -0.25 16 12 C -0.54 -29.73 9.66 25.60 0.25 -29.48 16 13 H 0.05 2.72 7.99 -2.92 -0.02 2.70 16 14 C 0.01 0.84 5.47 84.65 0.46 1.30 16 15 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 16 Si 0.95 43.29 27.47 68.60 1.88 45.17 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 20 C -0.20 -5.59 9.97 22.41 0.22 -5.37 16 21 C 0.14 3.34 7.24 22.36 0.16 3.50 16 22 F -0.13 -3.17 16.56 44.97 0.74 -2.43 16 23 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.39 3.48 7.32 -74.05 -0.54 2.93 16 27 H 0.17 2.07 6.40 -2.91 -0.02 2.05 16 28 H 0.14 3.56 6.30 -2.91 -0.02 3.55 16 29 H 0.06 2.38 7.66 -2.39 -0.02 2.36 16 30 H 0.07 2.42 7.66 -2.38 -0.02 2.40 16 31 H 0.03 1.29 7.20 -2.39 -0.02 1.28 16 32 H 0.03 1.19 7.57 -2.38 -0.02 1.18 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -64.77 293.17 3.39 -61.37 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.52 Total: 8.13 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 2.82 Total: -31.25 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.30 Total: -56.86 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -2.87 Total: -24.15 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.74 Total: -2.43 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -64.77 3.39 -61.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235239531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.499 kcal (2) G-P(sol) polarization free energy of solvation -64.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds