Wall clock time and date at job start Mon Mar 30 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39347 * 120.34510 * 184.24602 * 3 2 1 5 5 C 1.38294 * 120.19890 * 179.97438 * 4 3 2 6 6 C 1.38037 * 120.87771 * 359.97438 * 5 4 3 7 7 C 1.39025 * 120.27069 * 0.02968 * 6 5 4 8 8 C 1.40623 * 119.52435 * 359.97004 * 7 6 5 9 9 C 1.46035 * 106.14057 * 179.97438 * 8 7 6 10 10 C 1.34509 * 107.00957 * 359.76978 * 9 8 7 11 11 N 1.36610 * 109.88375 * 0.37478 * 10 9 8 12 12 C 1.46505 * 125.07657 * 179.87787 * 11 10 9 13 13 C 1.52997 * 109.47212 * 264.69503 * 12 11 10 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47114 * 60.00582 * 19 17 15 21 21 H 1.48503 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47402 * 300.00322 * 19 17 15 23 23 H 1.08004 * 119.89511 * 359.95606 * 4 3 2 24 24 H 1.07994 * 119.56376 * 179.97438 * 5 4 3 25 25 H 1.07997 * 119.86249 * 180.02562 * 6 5 4 26 26 H 1.08005 * 126.49704 * 179.97438 * 9 8 7 27 27 H 1.07995 * 125.06071 * 180.25247 * 10 9 8 28 28 H 1.09002 * 109.47068 * 24.69563 * 12 11 10 29 29 H 1.09001 * 109.47372 * 144.69651 * 12 11 10 30 30 H 1.09002 * 109.47153 * 300.00008 * 13 12 11 31 31 H 1.08998 * 109.47533 * 59.99637 * 13 12 11 32 32 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 33 33 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 34 34 H 0.96996 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 1.2002 0.0890 5 6 4.6544 1.1973 0.0893 6 6 5.3603 0.0142 0.0025 7 6 4.6869 -1.1987 -0.0876 8 6 3.2807 -1.2122 -0.0890 9 6 2.8883 -2.6149 -0.1937 10 6 4.0215 -3.3372 -0.2524 11 7 5.1050 -2.5079 -0.1851 12 6 6.5030 -2.9450 -0.2180 13 6 7.0277 -3.0840 1.2124 14 6 8.4873 -3.5410 1.1781 15 6 9.0044 -3.6774 2.5871 16 1 8.3565 -3.4602 3.4235 17 6 10.3042 -4.0804 2.8085 18 7 11.0931 -4.3453 1.7901 19 14 10.9453 -4.2487 4.5550 20 1 10.1295 -5.2505 5.2873 21 1 12.3621 -4.6924 4.5216 22 1 10.8540 -2.9366 5.2444 23 1 2.7349 2.1351 0.1577 24 1 5.1892 2.1330 0.1583 25 1 6.4401 0.0310 0.0046 26 1 1.8793 -2.9993 -0.2223 27 1 4.0678 -4.4127 -0.3378 28 1 6.5709 -3.9074 -0.7251 29 1 7.1013 -2.2086 -0.7545 30 1 6.9597 -2.1216 1.7196 31 1 6.4293 -3.8203 1.7490 32 1 8.5549 -4.5036 0.6712 33 1 9.0860 -2.8049 0.6415 34 1 12.0076 -4.6284 1.9459 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236170185.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:06 Heat of formation + Delta-G solvation = 72.690291 kcal Electronic energy + Delta-G solvation = -17033.638378 eV Core-core repulsion = 14317.507414 eV Total energy + Delta-G solvation = -2716.130964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.37289 -37.68392 -36.12457 -34.75932 -32.82629 -31.47289 -29.81208 -29.06137 -26.53805 -24.02755 -23.20106 -21.65938 -21.01050 -20.50376 -18.05524 -16.80742 -16.34073 -15.93907 -15.44598 -14.90061 -14.52663 -14.29115 -14.19518 -13.68129 -13.26396 -13.06953 -12.76193 -12.63296 -12.48152 -12.15242 -11.78002 -11.54099 -11.40986 -11.22932 -10.92015 -10.86700 -10.67831 -9.97314 -9.76394 -9.50171 -9.26316 -8.46870 -8.25221 -7.63511 -6.11972 -4.15215 0.58701 1.51870 2.63807 2.65567 2.94461 3.03650 3.26794 3.31615 3.34248 3.90815 3.95882 4.36847 4.66736 4.78550 4.90909 5.06296 5.14441 5.24457 5.40231 5.52335 5.52936 5.65281 5.75192 5.84276 5.93191 6.27748 6.31166 6.34686 6.48510 6.60996 6.69150 6.82372 7.19266 7.34522 7.48182 7.50129 7.58770 7.85526 8.27094 8.90770 9.49993 10.99130 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033371 B = 0.003959 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.844818 B = 7071.595191 C = 7293.363438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.268 3.732 3 C -0.003 4.003 4 C -0.088 4.088 5 C -0.115 4.115 6 C -0.083 4.083 7 C 0.096 3.904 8 C -0.067 4.067 9 C -0.226 4.226 10 C 0.079 3.921 11 N -0.470 5.470 12 C 0.103 3.897 13 C -0.125 4.125 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.129 0.871 24 H 0.135 0.865 25 H 0.130 0.870 26 H 0.143 0.857 27 H 0.171 0.829 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.180 7.060 -5.870 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.046 4.046 3 C -0.007 4.007 4 C -0.110 4.110 5 C -0.135 4.135 6 C -0.104 4.104 7 C -0.011 4.011 8 C -0.075 4.075 9 C -0.251 4.251 10 C -0.049 4.049 11 N -0.150 5.150 12 C -0.018 4.018 13 C -0.163 4.163 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.147 0.853 24 H 0.152 0.848 25 H 0.148 0.852 26 H 0.161 0.839 27 H 0.188 0.812 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.412 6.854 -5.933 15.370 hybrid contribution 0.973 -0.283 0.992 1.418 sum -11.439 6.572 -4.941 14.087 Atomic orbital electron populations 1.81199 1.12149 1.08007 1.09798 1.25707 0.92653 0.93076 0.93166 1.15330 0.83619 0.93077 1.08659 1.20901 0.94233 0.95912 0.99924 1.20654 0.93196 0.97507 1.02101 1.20395 1.00259 0.89476 1.00265 1.18085 0.92523 0.85744 1.04771 1.18915 0.91910 0.92513 1.04113 1.21535 0.98073 0.90501 1.15013 1.21993 0.85307 0.96695 1.00915 1.44420 1.07170 1.03825 1.59606 1.22251 0.77143 1.01311 1.01052 1.22071 1.00424 1.01545 0.92308 1.19039 0.88033 0.96554 0.97627 1.21138 0.96892 1.45909 0.92302 0.92676 1.25009 0.96957 0.95231 0.97091 1.69938 1.07175 1.46049 1.30222 0.86634 0.77857 0.78635 0.84775 1.20177 1.21206 1.20142 0.85257 0.84760 0.85215 0.83880 0.81154 0.89211 0.89678 0.92539 0.92569 0.96351 0.96323 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.46 18.54 41.84 0.78 -5.69 16 2 C 0.27 3.55 15.25 -22.48 -0.34 3.21 16 3 C 0.00 -0.03 5.76 -106.53 -0.61 -0.65 16 4 C -0.09 -0.88 9.75 -39.15 -0.38 -1.27 16 5 C -0.12 -1.13 9.99 -39.63 -0.40 -1.52 16 6 C -0.08 -0.98 9.97 -39.36 -0.39 -1.37 16 7 C 0.10 1.30 6.81 -84.00 -0.57 0.73 16 8 C -0.07 -0.90 6.17 -104.85 -0.65 -1.55 16 9 C -0.23 -2.84 10.93 -37.78 -0.41 -3.25 16 10 C 0.08 0.96 11.28 -16.74 -0.19 0.77 16 11 N -0.47 -6.39 2.78 -114.43 -0.32 -6.70 16 12 C 0.10 1.46 6.00 -4.04 -0.02 1.43 16 13 C -0.13 -2.28 5.48 -26.74 -0.15 -2.43 16 14 C 0.03 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -14.07 9.11 -34.44 -0.31 -14.39 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 19 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 24 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 25 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 26 H 0.14 1.60 8.06 -52.48 -0.42 1.17 16 27 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.09 1.17 8.12 -51.93 -0.42 0.75 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -30.19 307.54 -8.05 -38.24 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -4.19 Total: -3.10 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -4.67 Total: -18.32 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 1.19 Total: -37.35 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.19 -8.05 -38.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236170185.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.927 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds