Wall clock time and date at job start Mon Mar 30 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39347 * 120.34510 * 184.24602 * 3 2 1 5 5 C 1.38294 * 120.19890 * 179.97438 * 4 3 2 6 6 C 1.38037 * 120.87771 * 359.97438 * 5 4 3 7 7 C 1.39025 * 120.27069 * 0.02968 * 6 5 4 8 8 C 1.40623 * 119.52435 * 359.97004 * 7 6 5 9 9 C 1.46035 * 106.14057 * 179.97438 * 8 7 6 10 10 C 1.34509 * 107.00957 * 359.76978 * 9 8 7 11 11 N 1.36610 * 109.88375 * 0.37478 * 10 9 8 12 12 C 1.46505 * 125.07657 * 179.87787 * 11 10 9 13 13 C 1.52997 * 109.47212 * 264.69503 * 12 11 10 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47114 * 60.00582 * 19 17 15 21 21 H 1.48503 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47402 * 300.00322 * 19 17 15 23 23 H 1.08004 * 119.89511 * 359.95606 * 4 3 2 24 24 H 1.07994 * 119.56376 * 179.97438 * 5 4 3 25 25 H 1.07997 * 119.86249 * 180.02562 * 6 5 4 26 26 H 1.08005 * 126.49704 * 179.97438 * 9 8 7 27 27 H 1.07995 * 125.06071 * 180.25247 * 10 9 8 28 28 H 1.09002 * 109.47068 * 24.69563 * 12 11 10 29 29 H 1.09001 * 109.47372 * 144.69651 * 12 11 10 30 30 H 1.09002 * 109.47153 * 300.00008 * 13 12 11 31 31 H 1.08998 * 109.47533 * 59.99637 * 13 12 11 32 32 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 33 33 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 34 34 H 0.96996 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 1.2002 0.0890 5 6 4.6544 1.1973 0.0893 6 6 5.3603 0.0142 0.0025 7 6 4.6869 -1.1987 -0.0876 8 6 3.2807 -1.2122 -0.0890 9 6 2.8883 -2.6149 -0.1937 10 6 4.0215 -3.3372 -0.2524 11 7 5.1050 -2.5079 -0.1851 12 6 6.5030 -2.9450 -0.2180 13 6 7.0277 -3.0840 1.2124 14 6 8.4873 -3.5410 1.1781 15 6 9.0044 -3.6774 2.5871 16 1 8.3565 -3.4602 3.4235 17 6 10.3042 -4.0804 2.8085 18 7 11.0931 -4.3453 1.7901 19 14 10.9453 -4.2487 4.5550 20 1 10.1295 -5.2505 5.2873 21 1 12.3621 -4.6924 4.5216 22 1 10.8540 -2.9366 5.2444 23 1 2.7349 2.1351 0.1577 24 1 5.1892 2.1330 0.1583 25 1 6.4401 0.0310 0.0046 26 1 1.8793 -2.9993 -0.2223 27 1 4.0678 -4.4127 -0.3378 28 1 6.5709 -3.9074 -0.7251 29 1 7.1013 -2.2086 -0.7545 30 1 6.9597 -2.1216 1.7196 31 1 6.4293 -3.8203 1.7490 32 1 8.5549 -4.5036 0.6712 33 1 9.0860 -2.8049 0.6415 34 1 12.0076 -4.6284 1.9459 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236170185.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:06 Heat of formation + Delta-G solvation = 58.596054 kcal Electronic energy + Delta-G solvation = -17034.249550 eV Core-core repulsion = 14317.507414 eV Total energy + Delta-G solvation = -2716.742136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.31706 -38.65492 -37.16106 -36.29058 -34.47039 -32.71075 -31.05432 -29.98367 -28.09247 -25.33791 -24.43775 -22.66840 -22.15886 -21.84987 -19.17778 -18.30938 -17.64550 -16.98120 -16.53379 -16.33515 -15.84975 -15.58203 -15.27090 -14.79488 -14.41149 -14.28608 -13.98600 -13.74729 -13.72375 -13.50949 -13.15742 -12.83336 -12.68450 -12.55001 -12.47404 -12.15255 -12.07565 -11.60420 -11.47699 -11.25759 -10.55973 -10.53683 -9.16925 -8.60102 -8.20431 -6.30799 -0.33067 0.64014 1.41632 1.42712 1.50797 1.62030 1.68968 1.94344 2.06426 2.41439 2.93702 3.03015 3.13383 3.80184 3.83782 3.92792 4.21773 4.23572 4.24136 4.45208 4.50381 4.65273 4.74630 4.86142 4.97896 4.99958 5.05268 5.14629 5.44236 5.49053 5.50606 5.68354 5.71867 5.80875 5.83991 6.22566 6.24649 6.38223 6.49095 6.85234 7.38583 8.90207 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033371 B = 0.003959 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.844818 B = 7071.595191 C = 7293.363438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.286 3.714 3 C -0.019 4.019 4 C -0.074 4.074 5 C -0.106 4.106 6 C -0.094 4.094 7 C 0.072 3.928 8 C -0.084 4.084 9 C -0.238 4.238 10 C 0.075 3.925 11 N -0.478 5.478 12 C 0.116 3.884 13 C -0.108 4.108 14 C 0.029 3.971 15 C -0.545 4.545 16 H 0.055 0.945 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.957 3.043 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.268 1.268 23 H 0.158 0.842 24 H 0.168 0.832 25 H 0.134 0.866 26 H 0.152 0.848 27 H 0.196 0.804 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.413 8.060 -5.414 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.027 4.027 3 C -0.023 4.023 4 C -0.095 4.095 5 C -0.125 4.125 6 C -0.115 4.115 7 C -0.034 4.034 8 C -0.091 4.091 9 C -0.263 4.263 10 C -0.052 4.052 11 N -0.159 5.159 12 C -0.005 4.005 13 C -0.146 4.146 14 C -0.009 4.009 15 C -0.583 4.583 16 H 0.073 0.927 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.782 3.218 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.193 1.193 23 H 0.176 0.824 24 H 0.185 0.815 25 H 0.152 0.848 26 H 0.169 0.831 27 H 0.213 0.787 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.672 7.865 -5.476 15.888 hybrid contribution 1.047 -0.529 0.838 1.442 sum -11.624 7.336 -4.639 14.507 Atomic orbital electron populations 1.81211 1.13066 1.09098 1.11278 1.25834 0.92702 0.92078 0.92123 1.15480 0.83045 0.93695 1.10128 1.21284 0.94508 0.96206 0.97547 1.21047 0.93143 0.98092 1.00179 1.20673 1.00750 0.89703 1.00339 1.18399 0.92889 0.86218 1.05853 1.19140 0.92168 0.93204 1.04612 1.21746 0.98678 0.90549 1.15297 1.22430 0.84741 0.97792 1.00225 1.44345 1.06842 1.04234 1.60487 1.21959 0.77872 1.02427 0.98236 1.21765 0.97084 1.00628 0.95135 1.18911 0.91082 0.95274 0.95611 1.21619 0.97265 1.45505 0.93901 0.92723 1.25858 0.97357 0.94977 1.01114 1.70051 1.07511 1.47044 1.32311 0.85617 0.77271 0.78919 0.79969 1.19465 1.20837 1.19327 0.82437 0.81470 0.84817 0.83079 0.78710 0.87841 0.89002 0.93175 0.93061 0.98026 0.97987 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.68 18.54 19.00 0.35 -13.33 16 2 C 0.29 7.30 15.25 88.33 1.35 8.65 16 3 C -0.02 -0.44 5.76 -21.10 -0.12 -0.57 16 4 C -0.07 -1.28 9.75 22.55 0.22 -1.06 16 5 C -0.11 -1.75 9.99 22.24 0.22 -1.53 16 6 C -0.09 -2.05 9.97 22.41 0.22 -1.83 16 7 C 0.07 1.88 6.81 38.98 0.27 2.15 16 8 C -0.08 -2.17 6.17 -20.01 -0.12 -2.29 16 9 C -0.24 -5.78 10.93 23.44 0.26 -5.53 16 10 C 0.08 1.74 11.28 83.09 0.94 2.68 16 11 N -0.48 -12.48 2.78 -515.94 -1.43 -13.91 16 12 C 0.12 3.19 6.00 86.38 0.52 3.71 16 13 C -0.11 -3.89 5.48 30.59 0.17 -3.73 16 14 C 0.03 1.37 4.97 29.84 0.15 1.52 16 15 C -0.54 -29.38 9.11 25.60 0.23 -29.15 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 17 C 0.01 0.29 5.46 84.65 0.46 0.75 16 18 N -0.93 -53.81 13.29 21.45 0.28 -53.53 16 19 Si 0.96 42.65 29.54 68.60 2.03 44.68 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 24 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 25 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 26 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 27 H 0.20 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.10 2.56 8.12 -2.39 -0.02 2.54 16 29 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -64.83 307.54 7.08 -57.75 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.09 Total: 4.57 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 4.76 Total: -26.23 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -0.79 Total: -80.77 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -64.83 7.08 -57.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236170185.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.350 kcal (2) G-P(sol) polarization free energy of solvation -64.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds