Wall clock time and date at job start Mon Mar 30 2020 06:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40230 * 119.97787 * 217.22305 * 3 2 1 5 5 C 1.36333 * 120.66373 * 180.25057 * 4 3 2 6 6 C 1.39351 * 120.24709 * 359.83271 * 5 4 3 7 7 C 1.40837 * 119.64694 * 359.97438 * 6 5 4 8 8 C 1.46568 * 106.03504 * 179.97438 * 7 6 5 9 9 C 1.34195 * 106.93477 * 359.97438 * 8 7 6 10 10 N 1.36843 * 109.95929 * 359.97438 * 9 8 7 11 11 C 1.46502 * 125.01863 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47481 * 264.95973 * 11 10 9 13 13 C 1.52991 * 109.47390 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47316 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00216 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00280 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99611 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00178 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47223 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47236 * 120.00254 * 18 16 14 21 21 H 1.48493 * 109.47342 * 240.00547 * 18 16 14 22 22 C 1.39170 * 119.98047 * 37.05794 * 3 2 1 23 23 H 1.08002 * 119.67274 * 0.06347 * 4 3 2 24 24 H 1.07999 * 119.88138 * 179.81270 * 5 4 3 25 25 H 1.08005 * 126.53211 * 179.97438 * 8 7 6 26 26 H 1.08006 * 125.02286 * 180.02562 * 9 8 7 27 27 H 1.09004 * 109.47214 * 24.96260 * 11 10 9 28 28 H 1.09002 * 109.46801 * 144.96085 * 11 10 9 29 29 H 1.09000 * 109.46682 * 300.00156 * 12 11 10 30 30 H 1.09001 * 109.46827 * 59.99480 * 12 11 10 31 31 H 1.09004 * 109.47267 * 300.00263 * 13 12 11 32 32 H 1.09008 * 109.47271 * 60.00235 * 13 12 11 33 33 H 0.97000 * 119.99272 * 179.97438 * 17 16 14 34 34 H 1.08002 * 120.30996 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2683 0.9682 0.7348 5 6 4.6315 0.9849 0.7406 6 6 5.3483 0.0345 0.0161 7 6 4.6569 -0.9451 -0.7228 8 6 5.6854 -1.7741 -1.3578 9 6 6.8743 -1.2744 -0.9867 10 7 6.6916 -0.1939 -0.1671 11 6 7.7685 0.6015 0.4280 12 6 8.0651 0.0850 1.8373 13 6 9.1901 0.9152 2.4585 14 6 9.4819 0.4068 3.8467 15 1 8.9213 -0.4256 4.2460 16 6 10.4652 1.0036 4.6070 17 7 11.1482 2.0168 4.1207 18 14 10.8274 0.3729 6.3276 19 1 9.9274 -0.7673 6.6365 20 1 12.2403 -0.0779 6.4024 21 1 10.6026 1.4621 7.3116 22 6 3.2639 -0.9611 -0.7265 23 1 2.7223 1.7095 1.2994 24 1 5.1580 1.7377 1.3085 25 1 5.5183 -2.6249 -2.0017 26 1 7.8337 -1.6666 -1.2906 27 1 8.6649 0.5167 -0.1863 28 1 7.4618 1.6462 0.4810 29 1 7.1687 0.1698 2.4515 30 1 8.3717 -0.9597 1.7842 31 1 10.0864 0.8300 1.8440 32 1 8.8839 1.9600 2.5115 33 1 11.8398 2.4368 4.6557 34 1 2.7290 -1.7101 -1.2914 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236170299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:14 Heat of formation + Delta-G solvation = 71.621518 kcal Electronic energy + Delta-G solvation = -16943.051106 eV Core-core repulsion = 14226.873796 eV Total energy + Delta-G solvation = -2716.177310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37555 -37.89500 -35.99708 -34.74226 -32.84711 -31.42576 -29.98296 -29.03665 -26.65471 -24.04990 -22.84743 -22.29995 -20.65577 -20.09346 -18.50184 -17.15859 -16.23642 -16.18189 -14.89765 -14.59020 -14.55042 -14.46221 -13.90210 -13.78562 -13.58896 -13.14560 -12.71915 -12.63763 -12.51796 -12.19003 -12.13426 -11.59105 -11.33716 -10.99546 -10.95310 -10.82819 -10.63027 -9.99016 -9.83231 -9.54263 -9.24317 -8.47782 -8.23309 -7.67383 -6.12510 -4.15515 0.84398 1.22307 2.66451 2.72801 2.90988 3.01707 3.24167 3.32412 3.36490 3.91616 3.94620 4.36710 4.60707 4.78452 4.85259 5.02678 5.23368 5.24711 5.43160 5.51864 5.57379 5.60221 5.74567 5.80398 5.95523 6.22191 6.27301 6.33144 6.48920 6.62298 6.70779 6.81893 7.18084 7.33199 7.48212 7.49779 7.58349 7.85328 8.26786 8.90938 9.49838 10.98663 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026878 B = 0.004042 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.497472 B = 6926.405215 C = 7525.799195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.269 3.731 3 C -0.073 4.073 4 C -0.061 4.061 5 C -0.119 4.119 6 C 0.127 3.873 7 C -0.121 4.121 8 C -0.207 4.207 9 C 0.061 3.939 10 N -0.469 5.469 11 C 0.101 3.899 12 C -0.125 4.125 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.012 4.012 23 H 0.132 0.868 24 H 0.132 0.868 25 H 0.148 0.852 26 H 0.170 0.830 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.354 -4.188 -11.067 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.046 4.046 3 C -0.077 4.077 4 C -0.083 4.083 5 C -0.139 4.139 6 C 0.016 3.984 7 C -0.126 4.126 8 C -0.231 4.231 9 C -0.065 4.065 10 N -0.148 5.148 11 C -0.019 4.019 12 C -0.163 4.163 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.033 4.033 23 H 0.149 0.851 24 H 0.150 0.850 25 H 0.165 0.835 26 H 0.187 0.813 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.661 -3.886 -10.899 15.734 hybrid contribution 0.914 -0.276 1.039 1.411 sum -9.747 -4.162 -9.861 14.476 Atomic orbital electron populations 1.81225 1.12200 1.08767 1.09533 1.25728 0.92613 0.93171 0.93044 1.15636 0.83923 1.01533 1.06652 1.20394 0.93060 0.97228 0.97614 1.19769 0.93186 0.99434 1.01513 1.18478 0.83662 0.97380 0.98835 1.19031 0.92526 0.98454 1.02558 1.21614 0.90242 1.03529 1.07752 1.21943 0.99881 0.89627 0.95082 1.44488 1.04658 1.25872 1.39787 1.22272 0.88002 0.94953 0.96720 1.22069 1.01362 1.00872 0.92018 1.19049 0.91913 0.94838 0.95524 1.21212 1.18789 1.16433 0.99654 0.92569 1.25016 0.95967 0.94942 0.98430 1.69961 1.23311 1.22724 1.37354 0.86522 0.78171 0.78904 0.84363 1.19680 1.20938 1.20902 1.20459 0.91819 0.95702 0.95318 0.85055 0.85023 0.83475 0.81312 0.89211 0.89645 0.92517 0.92572 0.96345 0.96311 0.92914 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.30 18.54 41.84 0.78 -5.52 16 2 C 0.27 3.31 15.32 -22.47 -0.34 2.96 16 3 C -0.07 -0.81 5.73 -106.88 -0.61 -1.43 16 4 C -0.06 -0.67 9.66 -39.52 -0.38 -1.05 16 5 C -0.12 -1.44 9.90 -39.85 -0.39 -1.83 16 6 C 0.13 1.68 6.81 -83.93 -0.57 1.11 16 7 C -0.12 -1.47 6.36 -105.16 -0.67 -2.14 16 8 C -0.21 -2.25 11.09 -37.65 -0.42 -2.67 16 9 C 0.06 0.69 11.27 -16.74 -0.19 0.50 16 10 N -0.47 -6.19 2.77 -114.36 -0.32 -6.51 16 11 C 0.10 1.42 5.99 -4.04 -0.02 1.40 16 12 C -0.12 -2.27 5.48 -26.73 -0.15 -2.41 16 13 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 14 C -0.52 -14.02 9.11 -34.44 -0.31 -14.33 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 18 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.01 -0.13 9.81 -38.84 -0.38 -0.51 16 23 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 24 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 25 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 26 H 0.17 1.45 8.06 -52.48 -0.42 1.03 16 27 H 0.09 1.16 8.12 -51.93 -0.42 0.73 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 307.58 15.07 4.64 4.64 Total: -1.00 -30.11 307.58 -8.06 -38.17 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.19 Total: -3.26 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -4.68 Total: -18.48 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 1.19 Total: -36.97 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.11 -8.06 -38.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236170299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.791 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds