Wall clock time and date at job start Mon Mar 30 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40263 * 119.84050 * 272.01236 * 3 2 1 5 5 C 1.36214 * 120.37863 * 180.02562 * 4 3 2 6 6 C 1.39904 * 119.96542 * 359.97438 * 5 4 3 7 7 C 1.46297 * 133.82345 * 179.97438 * 6 5 4 8 8 C 1.34419 * 107.03366 * 180.02562 * 7 6 5 9 9 N 1.36628 * 109.96836 * 0.02562 * 8 7 6 10 10 C 1.46505 * 125.07314 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47212 * 265.02328 * 10 9 8 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00113 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99923 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47375 * 89.99678 * 17 15 13 19 19 H 1.48508 * 109.47196 * 209.99673 * 17 15 13 20 20 H 1.48504 * 109.47051 * 329.99297 * 17 15 13 21 21 C 1.37816 * 109.86063 * 0.22631 * 9 8 7 22 22 C 1.38708 * 133.36863 * 180.40014 * 21 9 8 23 23 H 1.08004 * 119.81044 * 0.02562 * 4 3 2 24 24 H 1.07999 * 120.02130 * 180.02562 * 5 4 3 25 25 H 1.07998 * 126.48758 * 0.02562 * 7 6 5 26 26 H 1.08006 * 125.01696 * 180.02562 * 8 7 6 27 27 H 1.09002 * 109.47068 * 25.02388 * 10 9 8 28 28 H 1.09001 * 109.47372 * 145.02475 * 10 9 8 29 29 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 31 31 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 32 32 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 33 33 H 0.97008 * 120.00167 * 179.97438 * 16 15 13 34 34 H 1.08006 * 120.16309 * 359.39395 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2659 -0.0418 1.2159 5 6 4.6280 -0.0411 1.2287 6 6 5.3381 0.0016 0.0241 7 6 6.7617 0.0150 -0.3128 8 6 6.8487 0.0622 -1.6533 9 7 5.5975 0.0806 -2.2017 10 6 5.3081 0.1314 -3.6370 11 6 5.0835 1.5842 -4.0609 12 6 4.7819 1.6374 -5.5599 13 6 4.5601 3.0683 -5.9773 14 1 4.6278 3.8607 -5.2466 15 6 4.2716 3.3661 -7.2923 16 7 4.0775 4.6148 -7.6564 17 14 4.1551 1.9957 -8.5563 18 1 2.7569 1.4998 -8.6214 19 1 4.5586 2.5149 -9.8879 20 1 5.0573 0.8831 -8.1647 21 6 4.6481 0.0500 -1.2032 22 6 3.2611 0.0444 -1.2076 23 1 2.7202 -0.0752 2.1474 24 1 5.1595 -0.0743 2.1683 25 1 7.5867 -0.0086 0.3838 26 1 7.7716 0.0825 -2.2141 27 1 6.1496 -0.2831 -4.1922 28 1 4.4114 -0.4513 -3.8478 29 1 4.2420 1.9987 -3.5057 30 1 5.9802 2.1670 -3.8502 31 1 5.6237 1.2230 -6.1148 32 1 3.8853 1.0546 -5.7710 33 1 3.8749 4.8243 -8.5816 34 1 2.7212 0.0770 -2.1425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236170417.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:09 Heat of formation + Delta-G solvation = 60.235257 kcal Electronic energy + Delta-G solvation = -17090.046132 eV Core-core repulsion = 14373.375077 eV Total energy + Delta-G solvation = -2716.671055 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.27097 -38.86169 -37.18456 -36.25103 -34.49352 -32.82391 -31.12576 -30.30732 -28.35263 -25.03887 -24.42313 -22.98599 -22.06923 -21.26256 -19.34494 -18.88613 -17.85629 -17.05539 -16.32684 -16.07561 -15.85561 -15.51527 -15.01801 -14.92902 -14.73787 -14.69081 -14.04972 -13.84459 -13.77186 -13.56049 -13.32126 -13.00168 -12.70275 -12.57289 -12.31491 -11.91820 -11.83093 -11.66936 -11.57432 -11.37885 -10.79001 -10.60016 -9.16270 -8.56033 -8.31210 -6.36900 -0.26228 0.54920 1.36592 1.38043 1.49533 1.55655 1.66869 1.96160 2.16179 2.34866 2.90050 3.01985 3.04664 3.75920 3.84556 4.00345 4.07651 4.14245 4.30997 4.42830 4.44143 4.67732 4.70930 4.81126 4.84532 4.96227 5.04010 5.09940 5.35593 5.42865 5.48361 5.51929 5.62606 5.81466 5.87747 6.22919 6.26215 6.41411 6.44454 6.72154 7.28074 8.85911 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.004922 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.486529 B = 5687.918360 C = 6590.268929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.283 3.717 3 C -0.031 4.031 4 C -0.101 4.101 5 C -0.068 4.068 6 C -0.094 4.094 7 C -0.218 4.218 8 C 0.065 3.935 9 N -0.481 5.481 10 C 0.111 3.889 11 C -0.107 4.107 12 C -0.008 4.008 13 C -0.537 4.537 14 H 0.024 0.976 15 C 0.001 3.999 16 N -0.955 5.955 17 Si 0.954 3.046 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.234 1.234 21 C 0.065 3.935 22 C -0.076 4.076 23 H 0.153 0.847 24 H 0.163 0.837 25 H 0.175 0.825 26 H 0.197 0.803 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.023 0.977 33 H 0.266 0.734 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.429 -14.842 16.056 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.031 4.031 3 C -0.035 4.035 4 C -0.122 4.122 5 C -0.086 4.086 6 C -0.100 4.100 7 C -0.242 4.242 8 C -0.062 4.062 9 N -0.162 5.162 10 C -0.010 4.010 11 C -0.145 4.145 12 C -0.046 4.046 13 C -0.575 4.575 14 H 0.043 0.957 15 C -0.195 4.195 16 N -0.595 5.595 17 Si 0.777 3.223 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.157 1.157 21 C -0.041 4.041 22 C -0.099 4.099 23 H 0.171 0.829 24 H 0.180 0.820 25 H 0.193 0.807 26 H 0.214 0.786 27 H 0.134 0.866 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.588 -14.737 15.563 22.149 hybrid contribution -0.102 0.439 -1.112 1.200 sum 5.485 -14.297 14.450 21.055 Atomic orbital electron populations 1.81242 1.13297 1.11255 1.08878 1.25903 0.92774 0.92122 0.92277 1.15616 0.82981 1.10185 0.94765 1.20768 0.94338 1.01038 0.96105 1.20463 0.92771 0.98152 0.97258 1.19841 0.94519 1.03343 0.92316 1.22034 0.94292 1.13243 0.94659 1.22572 0.88169 1.00761 0.94655 1.44331 1.05092 1.60999 1.05749 1.22007 1.04427 0.97305 0.77256 1.21663 1.00730 0.95426 0.96722 1.19460 0.97111 0.94641 0.93419 1.21486 1.47971 0.93516 0.94480 0.95721 1.26101 0.94082 0.98208 1.01147 1.70087 1.50204 1.20652 1.18587 0.85606 0.79667 0.79708 0.77333 1.19540 1.21237 1.15719 1.18194 0.90537 1.06279 0.89109 1.20057 0.91051 1.01176 0.97613 0.82908 0.81992 0.80742 0.78580 0.86609 0.89110 0.94187 0.92810 0.94761 0.95869 0.92513 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.68 18.54 19.00 0.35 -14.33 16 2 C 0.28 7.54 15.30 88.33 1.35 8.89 16 3 C -0.03 -0.71 5.74 -21.28 -0.12 -0.83 16 4 C -0.10 -1.78 9.67 22.29 0.22 -1.56 16 5 C -0.07 -1.13 10.03 22.20 0.22 -0.91 16 6 C -0.09 -1.99 6.37 -20.13 -0.13 -2.12 16 7 C -0.22 -3.86 11.08 23.49 0.26 -3.60 16 8 C 0.06 1.22 11.27 83.07 0.94 2.15 16 9 N -0.48 -11.44 2.78 -516.02 -1.43 -12.87 16 10 C 0.11 2.76 6.00 86.38 0.52 3.28 16 11 C -0.11 -3.75 5.48 30.59 0.17 -3.59 16 12 C -0.01 -0.36 4.04 29.84 0.12 -0.24 16 13 C -0.54 -30.33 9.66 25.60 0.25 -30.09 16 14 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 15 C 0.00 0.06 5.47 84.65 0.46 0.53 16 16 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 17 Si 0.95 42.64 27.47 68.60 1.88 44.52 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.23 -9.22 6.54 99.48 0.65 -8.57 16 21 C 0.07 1.63 6.80 38.96 0.26 1.89 16 22 C -0.08 -1.91 9.68 22.64 0.22 -1.69 16 23 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 24 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 25 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 26 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 27 H 0.12 2.30 8.12 -2.39 -0.02 2.28 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 32 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 33 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 34 H 0.12 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -71.22 303.99 6.88 -64.34 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.04 Total: 5.84 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.74 Total: -27.87 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -0.78 Total: -86.84 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.52 kcal Total: -71.22 6.88 -64.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236170417.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.579 kcal (2) G-P(sol) polarization free energy of solvation -71.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds