Wall clock time and date at job start Mon Mar 30 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 119.99624 * 2 1 4 4 H 1.48502 * 109.47541 * 269.99647 * 3 2 1 5 5 H 1.48501 * 109.47496 * 30.00220 * 3 2 1 6 6 H 1.48503 * 109.47039 * 150.00067 * 3 2 1 7 7 C 1.37871 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00122 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.53010 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46876 * 180.02562 * 10 9 7 12 12 O 1.42901 * 109.46735 * 180.02562 * 11 10 9 13 13 C 1.35942 * 117.00239 * 180.02562 * 12 11 10 14 14 C 1.38732 * 120.02470 * 0.02562 * 13 12 11 15 15 C 1.38133 * 119.96608 * 179.97438 * 14 13 12 16 16 C 1.38476 * 120.03055 * 359.97428 * 15 14 13 17 17 F 1.35104 * 119.96701 * 180.02562 * 16 15 14 18 18 C 1.38426 * 120.06258 * 359.79702 * 16 15 14 19 19 C 1.38176 * 120.02777 * 0.46040 * 18 16 15 20 20 C 1.50703 * 120.01509 * 179.79349 * 19 18 16 21 21 O 1.42898 * 109.47171 * 359.72296 * 20 19 18 22 22 H 0.97005 * 120.00275 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47219 * 60.00323 * 9 7 2 24 24 H 1.08998 * 109.47147 * 300.00195 * 9 7 2 25 25 H 1.09002 * 109.46773 * 59.99915 * 10 9 7 26 26 H 1.08998 * 109.47049 * 299.99973 * 10 9 7 27 27 H 1.08994 * 109.47373 * 60.00085 * 11 10 9 28 28 H 1.08998 * 109.47218 * 299.99819 * 11 10 9 29 29 H 1.07992 * 120.02028 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.98132 * 180.02562 * 15 14 13 31 31 H 1.07998 * 119.98649 * 180.22622 * 18 16 15 32 32 H 1.09002 * 109.47152 * 239.72080 * 20 19 18 33 33 H 1.09001 * 109.46980 * 119.72181 * 20 19 18 34 34 H 0.96698 * 113.99898 * 59.99612 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 8 2.4089 -6.0732 -0.0006 13 6 1.8894 -7.3295 -0.0016 14 6 0.5142 -7.5119 -0.0037 15 6 -0.0124 -8.7890 -0.0052 16 6 0.8318 -9.8867 -0.0052 17 9 0.3154 -11.1351 -0.0073 18 6 2.2042 -9.7060 -0.0080 19 6 2.7336 -8.4297 -0.0010 20 6 4.2278 -8.2334 0.0007 21 8 4.8756 -9.5072 0.0009 22 1 -0.4851 0.8401 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8720 -3.6044 -0.8905 27 1 0.8540 -5.0446 -0.8913 28 1 0.8533 -5.0451 0.8886 29 1 -0.1444 -6.6561 -0.0049 30 1 -1.0830 -8.9313 -0.0072 31 1 2.8614 -10.5630 -0.0117 32 1 4.5201 -7.6770 0.8913 33 1 4.5221 -7.6763 -0.8887 34 1 4.6610 -10.0576 -0.7646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236517717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:34 Heat of formation + Delta-G solvation = -129.014945 kcal Electronic energy + Delta-G solvation = -17811.724742 eV Core-core repulsion = 14623.785207 eV Total energy + Delta-G solvation = -3187.939536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.92255 -40.34206 -37.85362 -36.53414 -34.10919 -32.03982 -31.49253 -29.68118 -27.04184 -26.33640 -23.84417 -21.99289 -21.94723 -20.28323 -18.38096 -17.54110 -17.11254 -16.62168 -16.23749 -16.03039 -15.54997 -14.78747 -14.69281 -14.48141 -14.41897 -14.07073 -13.46242 -12.97292 -12.79142 -12.27999 -12.23649 -11.84343 -11.72951 -11.24117 -11.05411 -10.70348 -10.67865 -10.63506 -10.37748 -9.84863 -9.60694 -9.22995 -9.17814 -8.44231 -8.10098 -6.09359 -4.12334 0.95248 1.09674 3.26984 3.27740 3.34290 3.37981 3.38491 4.05814 4.22667 4.39717 4.45151 4.63450 4.90582 5.04975 5.26439 5.27038 5.35187 5.41029 5.47523 5.57267 5.66726 5.84275 5.97338 6.02548 6.14661 6.44956 6.45701 6.67152 6.89312 7.32842 7.43180 7.52845 7.63151 7.88673 8.29895 8.93819 9.52542 11.02084 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.035555 B = 0.003641 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.315423 B = 7688.371011 C = 8442.729723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.057 3.943 12 O -0.311 6.311 13 C 0.138 3.862 14 C -0.180 4.180 15 C -0.112 4.112 16 C 0.052 3.948 17 F -0.144 7.144 18 C -0.111 4.111 19 C -0.140 4.140 20 C 0.129 3.871 21 O -0.565 6.565 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.743 -18.565 -1.230 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.018 4.018 12 O -0.224 6.224 13 C 0.091 3.909 14 C -0.199 4.199 15 C -0.131 4.131 16 C 0.033 3.967 17 F -0.123 7.123 18 C -0.130 4.130 19 C -0.141 4.141 20 C 0.051 3.949 21 O -0.370 6.370 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.021 -18.175 -0.664 18.436 hybrid contribution -0.443 0.630 -0.508 0.923 sum 2.577 -17.545 -1.172 17.772 Atomic orbital electron populations 1.69957 1.06098 1.26822 1.50552 1.25018 0.94882 0.99390 0.95109 0.86545 0.79844 0.83175 0.78178 1.20586 1.21164 1.19774 1.21171 0.93161 0.90688 1.51053 0.92421 1.19051 0.93815 0.90844 0.97557 1.21736 0.99930 0.90833 1.02083 1.23295 0.92260 0.85122 1.01081 1.86129 1.37350 1.11644 1.87259 1.18862 0.91443 0.85383 0.95210 1.21244 0.94264 0.98068 1.06282 1.20961 1.00327 0.91152 1.00620 1.17465 0.91814 0.79485 1.07980 1.91476 1.87392 1.38943 1.94496 1.20673 0.93343 0.97408 1.01566 1.19849 0.97375 0.90628 1.06239 1.21013 0.85524 0.84926 1.03418 1.86558 1.71315 1.29361 1.49762 0.92867 0.96298 0.96286 0.92068 0.92106 0.92095 0.92086 0.83898 0.84534 0.83868 0.87396 0.91379 0.77713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.12 5.52 -26.73 -0.15 -2.26 16 11 C 0.06 0.91 4.74 37.16 0.18 1.09 16 12 O -0.31 -4.74 9.56 -19.56 -0.19 -4.93 16 13 C 0.14 1.87 6.66 -39.24 -0.26 1.61 16 14 C -0.18 -2.24 9.04 -39.44 -0.36 -2.59 16 15 C -0.11 -1.27 10.02 -39.53 -0.40 -1.67 16 16 C 0.05 0.61 7.30 -39.42 -0.29 0.32 16 17 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 18 C -0.11 -1.22 9.19 -39.53 -0.36 -1.58 16 19 C -0.14 -1.67 5.89 -104.48 -0.62 -2.29 16 20 C 0.13 1.40 6.91 36.01 0.25 1.65 16 21 O -0.56 -5.65 12.70 -35.23 -0.45 -6.09 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.93 7.66 -51.93 -0.40 0.53 16 28 H 0.06 0.94 7.66 -51.93 -0.40 0.54 16 29 H 0.14 1.67 6.30 -52.49 -0.33 1.34 16 30 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.14 1.26 6.59 -52.49 -0.35 0.92 16 32 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.38 2.28 8.11 45.56 0.37 2.65 16 LS Contribution 297.76 15.07 4.49 4.49 Total: -1.00 -30.18 297.76 -6.55 -36.73 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.60 Total: -0.77 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -2.55 Total: -18.43 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.74 Total: -25.45 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.63 Total: -11.02 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.18 -6.55 -36.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236517717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.288 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds