Wall clock time and date at job start Mon Mar 30 2020 06:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35988 * 117.00369 * 2 1 4 4 C 1.37799 * 119.86242 * 90.00692 * 3 2 1 5 5 C 1.50699 * 120.10501 * 359.97438 * 4 3 2 6 6 C 1.40724 * 119.79047 * 179.97438 * 4 3 2 7 7 C 1.41067 * 120.23263 * 179.97438 * 6 4 3 8 8 H 1.08001 * 120.00149 * 41.28542 * 7 6 4 9 9 C 1.39890 * 119.99507 * 221.55452 * 7 6 4 10 10 N 1.30898 * 119.99895 * 18.36668 * 9 7 6 11 11 Si 1.86806 * 119.99570 * 198.35995 * 9 7 6 12 12 H 1.48494 * 109.46976 * 60.00509 * 11 9 7 13 13 H 1.48498 * 109.46421 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47263 * 299.99994 * 11 9 7 15 15 C 1.41395 * 119.52939 * 0.24500 * 6 4 3 16 16 O 1.35701 * 120.13826 * 179.72733 * 15 6 4 17 17 C 1.42901 * 116.99786 * 87.51506 * 16 15 6 18 18 C 1.38281 * 119.72541 * 359.47485 * 15 6 4 19 19 C 1.50703 * 119.89847 * 180.29155 * 18 15 6 20 20 C 1.38522 * 120.19978 * 0.55347 * 18 15 6 21 21 F 1.35108 * 119.75854 * 179.71363 * 20 18 15 22 22 H 1.09004 * 109.46640 * 299.99294 * 1 2 3 23 23 H 1.08998 * 109.47530 * 59.99117 * 1 2 3 24 24 H 1.09001 * 109.47540 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47048 * 269.97958 * 5 4 3 26 26 H 1.08997 * 109.47170 * 29.97753 * 5 4 3 27 27 H 1.08997 * 109.47053 * 149.98387 * 5 4 3 28 28 H 0.97008 * 120.00056 * 179.97438 * 10 9 7 29 29 H 1.08999 * 109.47311 * 300.00328 * 17 16 15 30 30 H 1.08998 * 109.46661 * 60.00465 * 17 16 15 31 31 H 1.09002 * 109.46871 * 180.02562 * 17 16 15 32 32 H 1.08994 * 109.46937 * 270.25728 * 19 18 15 33 33 H 1.08998 * 109.47088 * 30.26402 * 19 18 15 34 34 H 1.09005 * 109.46805 * 150.26010 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.3581 1.8229 1.1950 5 6 2.0152 1.1511 2.4997 6 6 2.9975 3.0765 1.1933 7 6 3.3204 3.7108 2.4112 8 1 3.7178 3.1329 3.2324 9 6 3.1204 5.0877 2.5570 10 7 2.3227 5.7237 1.7369 11 14 3.9918 6.0185 3.9223 12 1 5.4610 5.8853 3.7526 13 1 3.6141 7.4533 3.8622 14 1 3.5924 5.4566 5.2376 15 6 3.3089 3.6982 -0.0379 16 8 3.9204 4.9095 -0.0540 17 6 5.3487 4.9158 -0.0088 18 6 2.9924 3.0644 -1.2255 19 6 3.3285 3.7206 -2.5399 20 6 2.3625 1.8308 -1.2106 21 9 2.0522 1.2222 -2.3762 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.0173 1.4563 2.8143 26 1 2.0398 0.0693 2.3688 27 1 2.7405 1.4418 3.2596 28 1 2.1837 6.6784 1.8383 29 1 5.6854 4.4298 0.9069 30 1 5.7418 4.3777 -0.8714 31 1 5.7083 5.9446 -0.0271 32 1 2.4942 4.3460 -2.8575 33 1 4.2198 4.3366 -2.4211 34 1 3.5144 2.9536 -3.2917 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258553759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:39 Heat of formation + Delta-G solvation = -121.739570 kcal Electronic energy + Delta-G solvation = -19783.600742 eV Core-core repulsion = 16595.976690 eV Total energy + Delta-G solvation = -3187.624052 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.41298 -40.73191 -39.33102 -36.89262 -35.48369 -33.72491 -30.68759 -30.04985 -28.16082 -27.86450 -26.23623 -25.27758 -22.80359 -21.54327 -19.24000 -18.44458 -18.19592 -17.48357 -16.95673 -16.65797 -16.27095 -15.86365 -15.62696 -15.25127 -15.11087 -14.54250 -14.11944 -13.97761 -13.79759 -13.73049 -13.33756 -13.14134 -12.91392 -12.77040 -12.72021 -12.56693 -12.27646 -11.91038 -11.76322 -11.45664 -10.85432 -10.76274 -10.34001 -9.11480 -8.90385 -8.55828 -6.29226 0.49846 0.66889 1.43194 1.47090 1.52465 2.24945 2.48360 2.94626 3.18587 3.53335 3.83153 4.15379 4.37813 4.43949 4.53139 4.55900 4.62507 4.69305 4.70497 4.73128 4.81309 4.86682 4.91478 4.98356 5.09596 5.11155 5.32072 5.42890 5.49402 5.74059 5.82146 5.94634 6.42358 6.67322 6.75725 6.94790 7.30171 8.45272 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.009557 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.673606 B = 2929.013604 C = 3820.051030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.349 6.349 3 C 0.079 3.921 4 C -0.186 4.186 5 C -0.071 4.071 6 C 0.087 3.913 7 C -0.488 4.488 8 H 0.084 0.916 9 C 0.061 3.939 10 N -0.790 5.790 11 Si 0.959 3.041 12 H -0.259 1.259 13 H -0.274 1.274 14 H -0.262 1.262 15 C 0.039 3.961 16 O -0.310 6.310 17 C 0.031 3.969 18 C -0.119 4.119 19 C -0.090 4.090 20 C -0.054 4.054 21 F -0.159 7.159 22 H 0.046 0.954 23 H 0.034 0.966 24 H 0.121 0.879 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.285 0.715 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -1.936 -0.619 2.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.035 3.965 4 C -0.188 4.188 5 C -0.127 4.127 6 C 0.084 3.916 7 C -0.516 4.516 8 H 0.102 0.898 9 C -0.158 4.158 10 N -0.414 5.414 11 Si 0.780 3.220 12 H -0.183 1.183 13 H -0.199 1.199 14 H -0.186 1.186 15 C -0.006 4.006 16 O -0.226 6.226 17 C -0.064 4.064 18 C -0.121 4.121 19 C -0.147 4.147 20 C -0.074 4.074 21 F -0.138 7.138 22 H 0.064 0.936 23 H 0.053 0.947 24 H 0.139 0.861 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.978 -1.725 -0.734 2.114 hybrid contribution 0.091 0.421 0.197 0.473 sum 1.069 -1.304 -0.537 1.769 Atomic orbital electron populations 1.23097 0.78249 1.04320 1.00287 1.85894 1.21097 1.25101 1.94501 1.18339 1.00171 0.86860 0.91141 1.20284 1.05918 0.98217 0.94383 1.20241 1.00736 0.98491 0.93256 1.17977 0.89616 0.90212 0.93821 1.19324 1.40051 0.93599 0.98606 0.89801 1.26313 0.93347 0.97740 0.98434 1.69797 1.26025 1.11091 1.34442 0.85607 0.80018 0.77414 0.78927 1.18295 1.19877 1.18625 1.18361 1.03010 0.88623 0.90604 1.86041 1.18391 1.24458 1.93707 1.22907 0.81286 1.02494 0.99710 1.19932 1.01719 0.93341 0.97063 1.20452 1.01925 0.99814 0.92468 1.17330 1.14752 0.95051 0.80306 1.91269 1.92429 1.83277 1.46832 0.93573 0.94680 0.86060 0.92759 0.92045 0.91771 0.90407 0.94897 0.94075 0.88568 0.91589 0.90937 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 11.13 113.37 1.26 2.38 16 2 O -0.35 -14.59 9.28 -93.42 -0.87 -15.46 16 3 C 0.08 3.71 5.69 22.49 0.13 3.83 16 4 C -0.19 -8.90 5.94 -19.36 -0.12 -9.01 16 5 C -0.07 -2.86 9.39 71.24 0.67 -2.19 16 6 C 0.09 4.43 5.33 -21.20 -0.11 4.32 16 7 C -0.49 -24.19 7.91 23.36 0.18 -24.01 16 8 H 0.08 4.00 6.78 -2.91 -0.02 3.98 16 9 C 0.06 2.91 4.46 85.23 0.38 3.29 16 10 N -0.79 -40.05 11.35 21.82 0.25 -39.80 16 11 Si 0.96 36.39 29.60 68.60 2.03 38.43 16 12 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 13 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 14 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 15 C 0.04 1.95 5.17 23.06 0.12 2.07 16 16 O -0.31 -14.59 6.65 -90.21 -0.60 -15.19 16 17 C 0.03 1.17 10.77 113.37 1.22 2.39 16 18 C -0.12 -5.58 5.89 -19.79 -0.12 -5.70 16 19 C -0.09 -3.48 9.59 71.24 0.68 -2.80 16 20 C -0.05 -2.58 7.27 22.67 0.16 -2.41 16 21 F -0.16 -7.23 16.28 44.97 0.73 -6.50 16 22 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.06 2.27 7.51 -2.39 -0.02 2.25 16 27 H 0.06 2.55 6.48 -2.39 -0.02 2.53 16 28 H 0.29 13.41 8.30 -92.70 -0.77 12.64 16 29 H 0.03 1.29 8.11 -2.39 -0.02 1.27 16 30 H 0.04 1.41 7.45 -2.39 -0.02 1.39 16 31 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 2.61 6.54 -2.39 -0.02 2.59 16 34 H 0.07 2.36 7.62 -2.38 -0.02 2.34 16 Total: -1.00 -58.53 290.64 7.12 -51.41 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.11 Total: 14.96 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 4.47 Total: -27.85 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.25 Total: -39.80 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.47 Total: -30.65 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.73 Total: -6.50 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.43 kcal Total: -58.53 7.12 -51.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258553759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.327 kcal (2) G-P(sol) polarization free energy of solvation -58.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds