Wall clock time and date at job start Mon Mar 30 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47686 * 2 1 4 4 C 1.53006 * 109.47050 * 239.99809 * 2 1 3 5 5 C 1.53001 * 109.47083 * 120.00348 * 2 1 3 6 6 C 1.50699 * 109.47270 * 59.99754 * 5 2 1 7 7 N 1.32024 * 118.80358 * 270.02262 * 6 5 2 8 8 C 1.31957 * 121.12545 * 179.72421 * 7 6 5 9 9 C 1.41061 * 118.78917 * 0.52265 * 8 7 6 10 10 C 1.41358 * 121.05413 * 179.73846 * 9 8 7 11 11 H 1.07998 * 119.99597 * 155.59944 * 10 9 8 12 12 C 1.39956 * 119.99978 * 335.59708 * 10 9 8 13 13 N 1.30824 * 120.00403 * 343.53998 * 12 10 9 14 14 Si 1.86801 * 119.99579 * 163.53890 * 12 10 9 15 15 H 1.48504 * 109.47326 * 265.55477 * 14 12 10 16 16 H 1.48500 * 109.47453 * 25.55958 * 14 12 10 17 17 H 1.48499 * 109.47040 * 145.55625 * 14 12 10 18 18 C 1.41271 * 117.88919 * 359.47369 * 9 8 7 19 19 Cl 1.73602 * 120.62988 * 180.28892 * 18 9 8 20 20 N 1.31955 * 118.80632 * 90.00331 * 6 5 2 21 21 H 1.09002 * 109.46938 * 300.00017 * 1 2 3 22 22 H 1.09001 * 109.46891 * 59.99807 * 1 2 3 23 23 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47805 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47099 * 300.00609 * 3 2 1 26 26 H 1.09002 * 109.46946 * 59.99988 * 3 2 1 27 27 H 1.09000 * 109.47383 * 300.00352 * 4 2 1 28 28 H 1.09002 * 109.46516 * 60.00137 * 4 2 1 29 29 H 1.09000 * 109.46969 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.46935 * 299.99636 * 5 2 1 31 31 H 1.08997 * 109.47328 * 179.97438 * 5 2 1 32 32 H 1.07990 * 120.60698 * 180.29010 * 8 7 6 33 33 H 0.96991 * 120.00164 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5376 -2.1421 1.2492 7 7 0.3808 -2.4078 1.8273 8 6 -0.1049 -3.6345 1.8492 9 6 0.6409 -4.6713 1.2504 10 6 0.1685 -6.0036 1.2512 11 1 0.5046 -6.6961 0.4936 12 6 -0.7345 -6.4253 2.2337 13 7 -0.8970 -5.7158 3.3208 14 14 -1.7080 -8.0014 1.9929 15 1 -3.0314 -7.6802 1.4007 16 1 -0.9647 -8.9079 1.0814 17 1 -1.9018 -8.6689 3.3051 18 6 1.8722 -4.3350 0.6450 19 17 2.8441 -5.5536 -0.1192 20 7 2.2698 -3.0754 0.6711 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.6766 -1.7490 -1.2493 28 1 1.6766 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2495 30 1 1.6767 -0.2075 2.1392 31 1 3.1300 -0.7218 1.2490 32 1 -1.0543 -3.8416 2.3204 33 1 -1.5231 -6.0079 4.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259720535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:47 Heat of formation + Delta-G solvation = -0.141797 kcal Electronic energy + Delta-G solvation = -16792.436167 eV Core-core repulsion = 14070.714116 eV Total energy + Delta-G solvation = -2721.722050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.46719 -36.88289 -35.37865 -34.37570 -31.93120 -30.84419 -27.89868 -26.87146 -26.71783 -24.71535 -22.75176 -21.41957 -18.39101 -17.69684 -16.41208 -15.69895 -15.10352 -14.66146 -13.95751 -13.71936 -13.48306 -12.99547 -12.61008 -12.28672 -12.09351 -11.93951 -11.55182 -11.43647 -11.26776 -11.13195 -11.05859 -10.95348 -10.77447 -10.33646 -10.24393 -10.17367 -10.14362 -9.62645 -9.23326 -8.95583 -8.06283 -7.77552 -7.15610 -4.73665 2.33155 2.58915 2.91659 2.96651 2.98631 3.16679 3.68822 4.35429 5.11220 5.22796 5.27604 5.46748 5.68124 5.77445 5.94063 6.01514 6.05053 6.19708 6.23093 6.31688 6.36283 6.42476 6.58456 6.61390 6.62795 6.77724 6.80137 6.90571 6.91734 7.29594 7.57397 8.03166 8.09391 8.33246 8.65826 9.64150 9.77513 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.027421 B = 0.006857 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.873415 B = 4082.352327 C = 4735.873770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.132 4.132 5 C -0.014 4.014 6 C 0.178 3.822 7 N -0.494 5.494 8 C 0.088 3.912 9 C 0.028 3.972 10 C -0.418 4.418 11 H 0.095 0.905 12 C 0.072 3.928 13 N -0.777 5.777 14 Si 0.920 3.080 15 H -0.264 1.264 16 H -0.257 1.257 17 H -0.273 1.273 18 C 0.087 3.913 19 Cl -0.074 7.074 20 N -0.483 5.483 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.165 0.835 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 4.393 -3.224 5.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 C -0.194 4.194 4 C -0.189 4.189 5 C -0.053 4.053 6 C -0.084 4.084 7 N -0.207 5.207 8 C -0.086 4.086 9 C 0.020 3.980 10 C -0.448 4.448 11 H 0.113 0.887 12 C -0.149 4.149 13 N -0.401 5.401 14 Si 0.744 3.256 15 H -0.188 1.188 16 H -0.180 1.180 17 H -0.198 1.198 18 C -0.088 4.088 19 Cl -0.046 7.046 20 N -0.198 5.198 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.182 0.818 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.659 5.278 -3.060 6.136 hybrid contribution -0.600 -1.836 -0.032 1.932 sum 0.059 3.442 -3.092 4.627 Atomic orbital electron populations 1.21793 0.94507 1.02447 1.00171 1.20479 0.95929 0.94338 0.95612 1.21845 1.00632 0.95786 1.01164 1.21793 1.00645 1.00774 0.95698 1.20000 0.99381 0.88863 0.97101 1.21611 0.91008 0.94067 1.01751 1.67641 1.13531 1.23641 1.15875 1.23394 0.99681 0.85570 0.99935 1.18933 0.90200 0.96276 0.92606 1.19702 1.19614 0.95439 1.10003 0.88687 1.26101 0.95532 0.99703 0.93553 1.69720 1.27693 1.37679 1.05003 0.86065 0.80083 0.80319 0.79168 1.18836 1.18023 1.19824 1.21684 0.91770 0.88368 1.06974 1.98252 1.71994 1.53468 1.80902 1.66731 1.35652 1.00461 1.16966 0.92891 0.94118 0.91999 0.92937 0.93121 0.92899 0.92107 0.94081 0.92973 0.91173 0.91425 0.81844 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.06 37.16 0.30 -1.89 16 2 C -0.06 -1.01 0.80 -154.51 -0.12 -1.14 16 3 C -0.14 -1.78 8.47 37.16 0.31 -1.46 16 4 C -0.13 -2.21 8.06 37.16 0.30 -1.91 16 5 C -0.01 -0.26 4.70 -27.88 -0.13 -0.39 16 6 C 0.18 4.06 5.28 -156.86 -0.83 3.23 16 7 N -0.49 -11.85 9.14 -10.10 -0.09 -11.94 16 8 C 0.09 2.21 9.99 -16.43 -0.16 2.05 16 9 C 0.03 0.71 5.60 -106.49 -0.60 0.11 16 10 C -0.42 -10.17 8.62 -37.75 -0.33 -10.49 16 11 H 0.10 2.25 7.21 -52.49 -0.38 1.87 16 12 C 0.07 1.63 5.20 -17.34 -0.09 1.54 16 13 N -0.78 -18.16 10.94 55.55 0.61 -17.55 16 14 Si 0.92 16.96 29.59 -169.99 -5.03 11.93 16 15 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 16 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 17 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 18 C 0.09 2.14 7.41 -16.28 -0.12 2.02 16 19 Cl -0.07 -1.62 27.94 -51.86 -1.45 -3.06 16 20 N -0.48 -11.59 9.14 -7.23 -0.07 -11.66 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 1.21 6.53 -51.93 -0.34 0.87 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.21 6.53 -51.93 -0.34 0.87 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.16 4.08 6.23 -52.49 -0.33 3.75 16 33 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 LS Contribution 288.35 15.07 4.35 4.35 Total: -1.00 -25.50 288.35 -7.47 -32.97 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.32 Total: 3.31 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.47 Total: -8.34 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.45 Total: -41.15 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -1.45 Total: -3.06 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -25.50 -7.47 -32.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259720535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.825 kcal (2) G-P(sol) polarization free energy of solvation -25.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds