Wall clock time and date at job start Mon Mar 30 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47686 * 2 1 4 4 C 1.53006 * 109.47050 * 239.99809 * 2 1 3 5 5 C 1.53001 * 109.47083 * 120.00348 * 2 1 3 6 6 C 1.50699 * 109.47270 * 59.99754 * 5 2 1 7 7 N 1.32024 * 118.80358 * 270.02262 * 6 5 2 8 8 C 1.31957 * 121.12545 * 179.72421 * 7 6 5 9 9 C 1.41061 * 118.78917 * 0.52265 * 8 7 6 10 10 C 1.41358 * 121.05413 * 179.73846 * 9 8 7 11 11 H 1.07998 * 119.99597 * 155.59944 * 10 9 8 12 12 C 1.39956 * 119.99978 * 335.59708 * 10 9 8 13 13 N 1.30824 * 120.00403 * 343.53998 * 12 10 9 14 14 Si 1.86801 * 119.99579 * 163.53890 * 12 10 9 15 15 H 1.48504 * 109.47326 * 265.55477 * 14 12 10 16 16 H 1.48500 * 109.47453 * 25.55958 * 14 12 10 17 17 H 1.48499 * 109.47040 * 145.55625 * 14 12 10 18 18 C 1.41271 * 117.88919 * 359.47369 * 9 8 7 19 19 Cl 1.73602 * 120.62988 * 180.28892 * 18 9 8 20 20 N 1.31955 * 118.80632 * 90.00331 * 6 5 2 21 21 H 1.09002 * 109.46938 * 300.00017 * 1 2 3 22 22 H 1.09001 * 109.46891 * 59.99807 * 1 2 3 23 23 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47805 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47099 * 300.00609 * 3 2 1 26 26 H 1.09002 * 109.46946 * 59.99988 * 3 2 1 27 27 H 1.09000 * 109.47383 * 300.00352 * 4 2 1 28 28 H 1.09002 * 109.46516 * 60.00137 * 4 2 1 29 29 H 1.09000 * 109.46969 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.46935 * 299.99636 * 5 2 1 31 31 H 1.08997 * 109.47328 * 179.97438 * 5 2 1 32 32 H 1.07990 * 120.60698 * 180.29010 * 8 7 6 33 33 H 0.96991 * 120.00164 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5376 -2.1421 1.2492 7 7 0.3808 -2.4078 1.8273 8 6 -0.1049 -3.6345 1.8492 9 6 0.6409 -4.6713 1.2504 10 6 0.1685 -6.0036 1.2512 11 1 0.5046 -6.6961 0.4936 12 6 -0.7345 -6.4253 2.2337 13 7 -0.8970 -5.7158 3.3208 14 14 -1.7080 -8.0014 1.9929 15 1 -3.0314 -7.6802 1.4007 16 1 -0.9647 -8.9079 1.0814 17 1 -1.9018 -8.6689 3.3051 18 6 1.8722 -4.3350 0.6450 19 17 2.8441 -5.5536 -0.1192 20 7 2.2698 -3.0754 0.6711 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.6766 -1.7490 -1.2493 28 1 1.6766 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2495 30 1 1.6767 -0.2075 2.1392 31 1 3.1300 -0.7218 1.2490 32 1 -1.0543 -3.8416 2.3204 33 1 -1.5231 -6.0079 4.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259720535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:47 Heat of formation + Delta-G solvation = -12.798890 kcal Electronic energy + Delta-G solvation = -16792.985019 eV Core-core repulsion = 14070.714116 eV Total energy + Delta-G solvation = -2722.270903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.24986 -38.30818 -37.17648 -36.13228 -33.79075 -32.61040 -29.53017 -28.06470 -28.02852 -26.42371 -24.63462 -23.17738 -19.74490 -19.52534 -18.22127 -17.45435 -16.78606 -16.17460 -15.29151 -15.24579 -15.00112 -14.64433 -14.39363 -13.89299 -13.56161 -13.31633 -13.15094 -12.87614 -12.80421 -12.66581 -12.46022 -12.43548 -12.27950 -11.98832 -11.69537 -11.58216 -11.45929 -11.27629 -11.00932 -10.79946 -9.91864 -9.64578 -8.89010 -6.58819 0.52750 0.69228 1.31422 1.39868 1.50507 1.54994 2.14720 2.60277 3.45177 3.66013 3.89379 4.04306 4.13817 4.22743 4.52081 4.67915 4.75451 4.79885 4.88409 4.94857 4.99964 5.01998 5.05719 5.14099 5.17353 5.27947 5.36993 5.46507 5.57212 5.61267 5.78457 6.17673 6.23801 6.52101 6.78543 7.77895 8.07725 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.027421 B = 0.006857 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.873415 B = 4082.352327 C = 4735.873770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.129 4.129 4 C -0.126 4.126 5 C -0.014 4.014 6 C 0.173 3.827 7 N -0.499 5.499 8 C 0.072 3.928 9 C 0.003 3.997 10 C -0.439 4.439 11 H 0.095 0.905 12 C 0.038 3.962 13 N -0.803 5.803 14 Si 0.992 3.008 15 H -0.257 1.257 16 H -0.256 1.256 17 H -0.264 1.264 18 C 0.066 3.934 19 Cl -0.055 7.055 20 N -0.490 5.490 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.024 0.976 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.022 0.978 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 4.923 -3.577 6.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.061 4.061 3 C -0.186 4.186 4 C -0.184 4.184 5 C -0.053 4.053 6 C -0.090 4.090 7 N -0.212 5.212 8 C -0.102 4.102 9 C -0.004 4.004 10 C -0.467 4.467 11 H 0.113 0.887 12 C -0.181 4.181 13 N -0.426 5.426 14 Si 0.811 3.189 15 H -0.181 1.181 16 H -0.179 1.179 17 H -0.188 1.188 18 C -0.109 4.109 19 Cl -0.028 7.028 20 N -0.204 5.204 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.043 0.957 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.175 0.825 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.546 5.821 -3.409 6.768 hybrid contribution -0.530 -1.973 0.082 2.044 sum 0.017 3.848 -3.327 5.087 Atomic orbital electron populations 1.21741 0.94945 1.00324 1.01437 1.20490 0.95510 0.96203 0.93870 1.21773 1.01246 0.93080 1.02549 1.21736 1.00785 0.98795 0.97065 1.20170 0.99742 0.86568 0.98847 1.22465 0.90430 0.95665 1.00409 1.67679 1.14128 1.23199 1.16229 1.23351 0.99830 0.86175 1.00839 1.19201 0.90816 0.97037 0.93396 1.19909 1.20896 0.95183 1.10751 0.88655 1.26940 0.95641 1.02849 0.92627 1.69740 1.28022 1.39214 1.05661 0.85016 0.78480 0.76034 0.79369 1.18100 1.17914 1.18799 1.21974 0.92226 0.89146 1.07527 1.98235 1.71324 1.52718 1.80485 1.66859 1.35888 1.00446 1.17251 0.92434 0.92028 0.95728 0.91968 0.91443 0.91868 0.95919 0.91993 0.92620 0.90467 0.90759 0.82475 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.06 71.98 0.58 -3.50 16 2 C -0.06 -1.83 0.80 -52.18 -0.04 -1.87 16 3 C -0.13 -2.92 8.47 71.98 0.61 -2.31 16 4 C -0.13 -4.09 8.06 71.98 0.58 -3.51 16 5 C -0.01 -0.51 4.70 29.85 0.14 -0.37 16 6 C 0.17 7.97 5.28 138.63 0.73 8.70 16 7 N -0.50 -24.49 9.14 -185.87 -1.70 -26.19 16 8 C 0.07 3.71 9.99 85.37 0.85 4.57 16 9 C 0.00 0.18 5.60 -21.07 -0.12 0.06 16 10 C -0.44 -21.63 8.62 23.45 0.20 -21.43 16 11 H 0.10 4.55 7.21 -2.91 -0.02 4.53 16 12 C 0.04 1.73 5.20 85.26 0.44 2.18 16 13 N -0.80 -37.69 10.94 21.83 0.24 -37.45 16 14 Si 0.99 34.06 29.59 68.60 2.03 36.09 16 15 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 16 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 17 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 18 C 0.07 3.31 7.41 85.40 0.63 3.94 16 19 Cl -0.06 -2.44 27.94 -2.72 -0.08 -2.51 16 20 N -0.49 -23.81 9.14 -176.79 -1.62 -25.43 16 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.02 0.95 6.53 -2.39 -0.02 0.94 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.02 0.88 6.53 -2.39 -0.02 0.87 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.16 8.14 6.23 -2.92 -0.02 8.12 16 33 H 0.30 12.56 8.30 -92.71 -0.77 11.79 16 Total: -1.00 -55.18 288.35 4.60 -50.58 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 1.11 Total: 18.45 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.61 Total: -13.53 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -3.08 Total: -89.07 kcal Atomic # 14 Polarization: 34.06 SS G_CDS: 2.03 Total: 36.09 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.08 Total: -2.51 kcal Total: -55.18 4.60 -50.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259720535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.783 kcal (2) G-P(sol) polarization free energy of solvation -55.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds