Wall clock time and date at job start Mon Mar 30 2020 07:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31774 * 122.75406 * 2 1 4 4 C 1.29024 * 117.13006 * 180.02562 * 3 2 1 5 5 S 1.70983 * 110.16363 * 359.72688 * 4 3 2 6 6 C 1.33638 * 122.74613 * 180.02562 * 2 1 3 7 7 C 1.50703 * 126.03884 * 359.97438 * 6 2 1 8 8 H 1.09002 * 109.47152 * 345.00286 * 7 6 2 9 9 C 1.53000 * 109.46912 * 105.00514 * 7 6 2 10 10 N 1.46896 * 109.46997 * 225.00224 * 7 6 2 11 11 C 1.46903 * 111.00095 * 56.04979 * 10 7 6 12 12 C 1.46903 * 110.99970 * 180.02562 * 10 7 6 13 13 C 1.53001 * 109.47156 * 170.00293 * 12 10 7 14 14 C 1.50706 * 109.46975 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99826 * 359.97438 * 14 13 12 16 16 C 1.37869 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00164 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47138 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47225 * 119.99842 * 18 16 14 21 21 H 1.48500 * 109.46906 * 239.99874 * 18 16 14 22 22 H 1.08999 * 109.47051 * 270.00099 * 1 2 3 23 23 H 1.09001 * 109.46824 * 29.99572 * 1 2 3 24 24 H 1.08991 * 109.47535 * 149.99431 * 1 2 3 25 25 H 1.08001 * 124.92406 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.47194 * 299.99742 * 9 7 6 27 27 H 1.08992 * 109.47399 * 59.99914 * 9 7 6 28 28 H 1.09004 * 109.46724 * 180.02562 * 9 7 6 29 29 H 1.08996 * 109.47275 * 59.99485 * 11 10 7 30 30 H 1.09005 * 109.46961 * 179.97438 * 11 10 7 31 31 H 1.09006 * 109.46779 * 299.99689 * 11 10 7 32 32 H 1.09006 * 109.46970 * 290.00119 * 12 10 7 33 33 H 1.08999 * 109.47221 * 49.99782 * 12 10 7 34 34 H 1.08996 * 109.46950 * 299.99743 * 13 12 10 35 35 H 1.08993 * 109.47357 * 60.00339 * 13 12 10 36 36 H 0.97002 * 120.00082 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1082 0.0000 4 6 3.5040 0.9818 -0.0005 5 16 3.9332 -0.6733 0.0066 6 6 2.2299 -1.1240 -0.0005 7 6 1.6845 -2.5289 -0.0006 8 1 0.6277 -2.5085 0.2657 9 6 1.8476 -3.1391 -1.3941 10 7 2.4206 -3.3399 0.9783 11 6 2.3644 -2.7318 2.3144 12 6 1.9155 -4.7191 1.0055 13 6 2.8552 -5.5900 1.8418 14 6 2.3373 -7.0050 1.8692 15 1 1.4286 -7.2577 1.3431 16 6 3.0236 -7.9769 2.5658 17 7 4.1304 -7.6693 3.2059 18 14 2.3820 -9.7310 2.5991 19 1 1.1293 -9.8151 1.8060 20 1 3.3998 -10.6416 2.0157 21 1 2.1065 -10.1307 4.0025 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8898 -0.5139 25 1 4.2061 1.8024 -0.0010 26 1 1.3014 -2.5374 -2.1205 27 1 2.9043 -3.1596 -1.6604 28 1 1.4528 -4.1551 -1.3943 29 1 1.3256 -2.6546 2.6351 30 1 2.9169 -3.3527 3.0197 31 1 2.8090 -1.7371 2.2798 32 1 0.9188 -4.7324 1.4469 33 1 1.8677 -5.1087 -0.0113 34 1 3.8517 -5.5768 1.4005 35 1 2.9029 -5.2005 2.8586 36 1 4.6130 -8.3530 3.6964 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259819193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:13 Heat of formation + Delta-G solvation = 40.177055 kcal Electronic energy + Delta-G solvation = -16746.586475 eV Core-core repulsion = 14164.489582 eV Total energy + Delta-G solvation = -2582.096893 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95819 -37.67825 -33.55179 -32.33675 -30.63336 -29.42490 -27.40663 -25.42038 -24.78235 -23.93258 -21.61175 -19.76763 -18.78955 -17.79796 -16.43456 -15.92018 -15.37123 -14.78343 -14.46545 -14.09581 -13.68052 -13.47682 -13.36755 -12.62160 -12.55574 -12.47188 -12.21165 -11.98481 -11.70072 -11.38212 -11.16027 -11.04643 -10.96949 -10.79994 -10.55339 -9.82740 -9.59947 -9.41344 -9.11934 -9.03327 -8.63652 -8.34600 -7.82658 -6.01048 -4.03539 0.78462 1.48952 1.93510 2.80877 3.30083 3.37709 3.41239 4.22330 4.31965 4.50210 4.82707 5.13495 5.20339 5.35032 5.36201 5.40894 5.56096 5.65726 5.69499 5.81873 5.89249 5.94684 6.04208 6.23187 6.25081 6.34307 6.42197 6.48666 6.95192 7.42932 7.48122 7.75793 7.75947 7.87259 8.05897 8.41372 9.03892 9.60362 11.10332 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.040134 B = 0.004622 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.488297 B = 6055.957300 C = 6317.184629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.046 3.954 3 N -0.471 5.471 4 C -0.011 4.011 5 S 0.170 5.830 6 C -0.196 4.196 7 C 0.152 3.848 8 H 0.057 0.943 9 C -0.143 4.143 10 N -0.535 5.535 11 C 0.025 3.975 12 C 0.059 3.941 13 C 0.029 3.971 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.194 0.806 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.018 0.982 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.017 0.983 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 15.055 -7.124 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 N -0.185 5.185 4 C -0.308 4.308 5 S 0.424 5.576 6 C -0.318 4.318 7 C 0.041 3.959 8 H 0.074 0.926 9 C -0.201 4.201 10 N -0.260 5.260 11 C -0.123 4.123 12 C -0.067 4.067 13 C -0.009 4.009 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.211 0.789 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.964 15.003 -7.159 16.739 hybrid contribution -1.879 -0.819 0.435 2.095 sum -3.843 14.184 -6.724 16.161 Atomic orbital electron populations 1.20323 0.87519 1.02990 1.02728 1.20164 0.98057 0.86272 1.04166 1.66170 1.05246 1.31623 1.15482 1.28295 0.95389 1.01342 1.05771 1.84328 1.06674 1.00602 1.65973 1.25808 0.95665 0.99968 1.10356 1.20021 0.95224 0.85978 0.94684 0.92558 1.21931 1.02975 1.01117 0.94098 1.62250 1.54557 1.03172 1.06032 1.22412 0.99522 0.99428 0.90987 1.22456 0.97374 0.85517 1.01359 1.19095 0.94753 0.92583 0.94435 1.21215 1.09333 0.93902 1.31586 0.92758 1.24981 0.94919 0.98879 0.95464 1.69979 1.16450 1.33581 1.33172 0.86557 0.78902 0.84934 0.77720 1.19773 1.20974 1.21054 0.90983 0.90870 0.90834 0.78918 0.92543 0.91572 0.91011 0.96339 0.89963 0.92768 0.96082 0.91373 0.95684 0.96456 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.81 36.01 0.35 -0.48 16 2 C 0.05 0.62 6.74 -84.23 -0.57 0.06 16 3 N -0.47 -6.50 10.53 -11.90 -0.13 -6.63 16 4 C -0.01 -0.13 12.23 51.58 0.63 0.51 16 5 S 0.17 2.17 22.40 -107.50 -2.41 -0.24 16 6 C -0.20 -2.74 3.96 -35.92 -0.14 -2.88 16 7 C 0.15 2.24 2.24 -68.87 -0.15 2.08 16 8 H 0.06 0.81 6.77 -51.93 -0.35 0.46 16 9 C -0.14 -1.94 8.97 37.16 0.33 -1.61 16 10 N -0.54 -9.50 4.52 -236.27 -1.07 -10.56 16 11 C 0.02 0.43 9.06 60.07 0.54 0.97 16 12 C 0.06 1.21 4.71 -3.82 -0.02 1.19 16 13 C 0.03 0.73 4.90 -27.88 -0.14 0.60 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.73 7.03 -51.93 -0.37 0.37 16 25 H 0.19 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.00 6.20 -51.93 -0.32 0.68 16 29 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 1.56 6.30 -51.93 -0.33 1.24 16 31 H 0.05 0.86 6.35 -51.93 -0.33 0.53 16 32 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.07 1.35 5.83 -51.93 -0.30 1.05 16 34 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.47 6.47 -51.93 -0.34 0.13 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -30.67 304.81 -8.12 -38.78 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -5.26 Total: -3.60 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 0.43 Total: -12.86 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.46 Total: -43.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.41 Total: -0.24 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.67 -8.12 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.961 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds